CX294745

Overview
NameCX294745
Unique NameCX294745
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14336 contig Ccv1_Contig14336:1152..1760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPD_ASHGO (T-complex protein 1 subunit delta OS=Ashbya gossypii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.812e-21
Identity = 62/194 (31.96%), Postives = 99/194 (51.03%), Query Frame = 2
Query:    2 FDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTSA---VSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDM 574
            F    LGS              + I G KT +A   VS I+RGAN+ +LDE ER+LHDA+C ++  ++   ++AGGGA E  +S  +   +  +   E     EFAE+L +IP  LA NA  ++ ++V +LR+ H + +T A        G+ + +    N  +  +++P +     I    E   +ILRIDD+
Sbjct:  340 FTEDRLGSADLVEEIDSDGTKIVKITGIKTGNAKPTVSCIVRGANNVVLDETERSLHDALCVIRCLVKERALIAGGGAPEIEVSRTIMRESRAMQGVEAFVWQEFAEALEVIPTTLAENAGLNSIKVVTELRSRHESGETNA--------GISVRRSGTTNTYDEHILQPVLVSTSAITLAAECVKSILRIDDI 525          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.271e-21
Identity = 53/159 (33.33%), Postives = 93/159 (58.49%), Query Frame = 2
Query:  101 VSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMI 577
            VS+++RG+N  +++E ER++HDA+C ++  ++   ++AGGGA E  L+V L   + TLG  E   +  ++++L +IP  LA NA  +    V +LR  H     + DK      G+++ KG I N +E  V++P +  +  +   TE   +IL+IDD++
Sbjct:  383 VSIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELAVRLAEYSRTLGGMEAYCVRAYSDALEVIPSTLAENAGLNPISTVTELRNRH----AQGDK----MAGINVRKGGISNIMEELVVQPLLVSISALTLATETVRSILKIDDVV 533          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 5.271e-21
Identity = 58/170 (34.12%), Postives = 93/170 (54.71%), Query Frame = 2
Query:   68 IMIKGTKTTS-AVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDM 574
            +   G K     VS++ RGAN   L+E ER+LHDA+C ++  ++   ++AGGG+ E   +  L   A  L  RE + +  F+E+L IIP  LA NA  +A ++V +LR+ H   +  A        G+++ KG + N LE  V++P +  +  IQ   E    I++IDD+
Sbjct:  362 VKFSGVKNAGKTVSILCRGANLLTLEEAERSLHDALCVIRCLVKQRALIAGGGSPEIEAAQRLLEHARQLEGREAICIRAFSEALEIIPVTLAENAGLNAIQVVTELRSRHANGEKTA--------GINVRKGIVTNILEENVLQPLLVNISAIQLAAETTKMIMKIDDI 523          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 6.885e-21
Identity = 52/165 (31.52%), Postives = 92/165 (55.76%), Query Frame = 2
Query:   83 TKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMI 577
            T     V++++RG+N  +++E ER++HDA+C ++  ++   ++AGGGA E  L++ L   + TL   E   +  FA+++ +IP  LA NA  +    V +LR  H   +         + G+++ KG I N LE  V++P +  V  +   TE   +IL+IDD++
Sbjct:  380 TSPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGE--------KTTGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVV 536          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 6.885e-21
Identity = 52/165 (31.52%), Postives = 92/165 (55.76%), Query Frame = 2
Query:   83 TKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMI 577
            T     V++++RG+N  +++E ER++HDA+C ++  ++   ++AGGGA E  L++ L   + TL   E   +  FA+++ +IP  LA NA  +    V +LR  H   +         + G+++ KG I N LE  V++P +  V  +   TE   +IL+IDD++
Sbjct:  380 TSPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGE--------KTTGINVRKGGISNILEEMVVQPLLVSVSALTLATETVRSILKIDDVV 536          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPD_BOVIN (T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=2 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 6.885e-21
Identity = 51/159 (32.08%), Postives = 91/159 (57.23%), Query Frame = 2
Query:  101 VSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMI 577
            V++++RG+N  +++E ER++HDA+C ++  ++   ++AGGGA E  L++ L   + TL   E   +  FA+++ +IP  LA NA  +    V +LR  H   +         + G+++ KG I N LE  V++P +  V  +   TE   +IL+IDD++
Sbjct:  389 VTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGE--------KTTGINVRKGGISNILEEQVVQPLLVSVSALTLATETVRSILKIDDVV 539          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 8.992e-21
Identity = 52/159 (32.70%), Postives = 91/159 (57.23%), Query Frame = 2
Query:  101 VSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMI 577
            V++++RG+N  +++E ER++HDA+C ++  ++   ++AGGGA E  L++ L   + TL   E   +  FA+++ +IP  LA NA  +    V +LR  H   +  A        G+++ KG I N LE  V++P +  V  +   TE   +IL+IDD++
Sbjct:  386 VTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTA--------GINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVV 536          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 100.138 bits (248), Expect = 8.992e-21
Identity = 52/159 (32.70%), Postives = 91/159 (57.23%), Query Frame = 2
Query:  101 VSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMI 577
            V++++RG+N  +++E ER++HDA+C ++  ++   ++AGGGA E  L++ L   + TL   E   +  FA+++ +IP  LA NA  +    V +LR  H   +  A        G+++ KG I N LE  V++P +  V  +   TE   +IL+IDD++
Sbjct:  386 VTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTA--------GINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVV 536          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPD_CANGA (T-complex protein 1 subunit delta OS=Candida glabrata GN=CCT4 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.992e-21
Identity = 54/167 (32.34%), Postives = 91/167 (54.49%), Query Frame = 2
Query:   74 IKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDM 574
            +KG      VS+I+RGAN  +LDE ER+LHDA+C ++  ++   ++AGGGA E  +S  LE  + ++   E     EFA++L +IP  LA NA  ++ +++ +LR+ H             + G+ + +    N  E  +++P +     I   +E   +ILRIDD+
Sbjct:  367 VKGVNAKPTVSVIIRGANSMILDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLERESRSMEGVEAYIWQEFAQALEVIPTTLAENAGLNSIKVITELRSRHENGDV--------NEGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDI 525          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPQ_BOVIN (T-complex protein 1 subunit theta OS=Bos taurus GN=CCT8 PE=2 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 4.463e-20
Identity = 58/173 (33.53%), Postives = 95/173 (54.91%), Query Frame = 2
Query:   68 IMIKGTKTTSAVS-LILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAK--GTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMI 577
            ++ K  K   A+S ++LRG+ D ++D++ERA+ D + T K       +V GGGA E  L+  +     T    EQ A+ +FAE+   IP+ LA N+   A E+++KL A H             ++GLD+      +++ LEAGV++  + K   I+  T AA+T+LR+D +I
Sbjct:  361 VVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGN--------KNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQII 525          
The following BLAST results are available for this feature:
BLAST of CX294745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
TCPD_ASHGO1.812e-2131.96T-complex protein 1 subunit delta OS=Ashbya gossyp... [more]
TCPD_TAKRU5.271e-2133.33T-complex protein 1 subunit delta OS=Takifugu rubr... [more]
TCPD_SCHPO5.271e-2134.12T-complex protein 1 subunit delta OS=Schizosacchar... [more]
TCPD_RAT6.885e-2131.52T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_MOUSE6.885e-2131.52T-complex protein 1 subunit delta OS=Mus musculus ... [more]
TCPD_BOVIN6.885e-2132.08T-complex protein 1 subunit delta OS=Bos taurus GN... [more]
TCPD_PONAB8.992e-2132.70T-complex protein 1 subunit delta OS=Pongo abelii ... [more]
TCPD_HUMAN8.992e-2132.70T-complex protein 1 subunit delta OS=Homo sapiens ... [more]
TCPD_CANGA8.992e-2132.34T-complex protein 1 subunit delta OS=Candida glabr... [more]
TCPQ_BOVIN4.463e-2033.53T-complex protein 1 subunit theta OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionC05055D11SK FlavSen1 Citrus clementina cDNA clone C05055D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294745 ID=CX294745; Name=CX294745; organism=Citrus clementina; type=EST; length=609bp
ATTTGATTCGTCACTTCTTGGATCTGCTGATGAAGTGGTAGAAGAGCGTG
TTGCCGATGATGATGTGATTATGATAAAGGGGACTAAAACTACAAGTGCG
GTTTCCTTGATACTTAGAGGAGCAAATGACTATATGCTTGATGAGATGGA
GAGAGCCCTGCATGATGCTATATGTACTGTCAAGAGGACCCTTGAATCCA
ACACGGTGGTGGCAGGTGGAGGTGCAGTTGAGTCTGCCTTGTCTGTCTAT
TTGGAATACCTAGCTACAACGCTAGGATCCCGAGAGCAGTTGGCACTTGC
TGAGTTTGCTGAATCTTTATTAATCATACCAAAGGTGCTTGCTGTAAATG
CTGCTAAGGATGCGACTGAGTTGGTTGCAAAACTACGGGCCTACCACCAT
GCTGCACAAACGAAGGCTGATAAAAAACACTTGTCTAGCATGGGACTGGA
TCTTGCAAAGGGGACCATTCGTAACAACTTGGAAGCTGGAGTCATAGAGC
CTGCAATGAGCAAAGTGAAAATTATTCAGTTTGNCACGGAAGCAGCAATC
ACAATTCTTCGTATTGATGATATGATCAAGCTTATGAAAGATGAAAGTCA
GAATGAAGA
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