CX294746

Overview
NameCX294746
Unique NameCX294746
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294746 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOCE (Chaperone protein dnaJ OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 54/191 (28.27%), Postives = 78/191 (40.84%), Query Frame = 2
Query:   38 CNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVT-------------------VDIEKGMQDGQEVVFYEDGEPKIDGEP-GDLKFRIRTAPHDRFRREGNNXXXXXXXXXXXXXXGFEKTIEHLDEHLVDISTKGITKPKEVRKFGGEGMPLHFSNKKGDLYITFEVLFPTTLTEDQKTRIKE 550
            CN   +V  KQ  P   Q +  + CD C+      EG  +T                   +DI  G+ DGQ +     G+P + G P GDL   IR  PH  F R+GNN              G E  +  LD  +     +G T+   V +  G+G+P    N +GD Y+   +  P  L + QK  ++E
Sbjct:  171 CNGTGQVQIKQNTP-FGQFINTKTCDACKG-----EGKIITEPCPACNGKGRLRSTKKIKIDIPAGIDDGQTISLRGGGDPGVKGGPNGDLYVNIRVKPHPLFTRQGNNVVCEVPITFTQAALGAELEVPTLDGKVKYTVPEG-TQTGSVFRLKGKGIPYLRGNGRGDQYVKVNIEVPKKLNDKQKALLRE 354          
BLAST of CX294746 vs. ExPASy Swiss-Prot
Match: DNJB4_MOUSE (DnaJ homolog subfamily B member 4 OS=Mus musculus GN=Dnajb4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 38/142 (26.76%), Postives = 71/142 (50.00%), Query Frame = 2
Query:  134 YEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNXXXXXXXXXXXXXXGFEKTIEHLDEHLVDISTKGITKPKEVRKFGGEGMPLHFS-NKKGDLYITFEVLFPTTLTEDQKTRIKEVL 556
            Y  E   +T++I+KG ++G ++ F  +G+   +  P D+ F I+   H +F+R+G+N              G    +  +D   + +S   I KP   R+  G G+P   + +++GDL I F+V FP  ++   K  +++ L
Sbjct:  193 YRSEDKILTIEIKKGWKEGTKITFPREGDETPNSIPADIVFVIKDKEHPKFKRDGSNIVYTAKISLREALCGCSLNVPTMDGRNLPMSVTDIVKPGMRRRVIGYGLPFPKNPDQRGDLLIEFDVSFPDVISAASKEILRKHL 334          
The following BLAST results are available for this feature:
BLAST of CX294746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
DNAJ_CLOCE1.744e-1128.27Chaperone protein dnaJ OS=Clostridium cellulolytic... [more]
DNJB4_MOUSE2.976e-1126.76DnaJ homolog subfamily B member 4 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionC05055D12SK FlavSen1 Citrus clementina cDNA clone C05055D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294746 ID=CX294746; Name=CX294746; organism=Citrus clementina; type=EST; length=711bp
GAAAAATGTTATAAAGCCAGCCCCAGGCAAAAGGCGCTGTAACTGCAGAA
ATGAGGTATATCACAAACAAATTGGTCCTGGCATGTTCCAACAGATGACT
GAGCAGGTCTGCGATCAATGCCAAAATGTTAAATATGAGAGAGAGGGATA
TTTTGTAACAGTTGATATTGAAAAAGGGATGCAAGATGGACAAGAGGTGG
TTTTCTATGAAGATGGTGAGCCCAAAATTGATGGAGAACCTGGAGATTTG
AAGTTCCGTATTCGCACAGCACCCCATGATCGCTTCAGAAGGGAAGGAAA
TAACTTGCACACAACTGTCACTGTCACGCTGGTTCAAGCTCTTGTTGGTT
TTGAGAAGACCATTGAGCACCTTGACGAACATTTAGTTGACATCAGCACA
AAGGGAATCACTAAGCCCAAGGAAGTGAGGAAGTTCGGAGGGGAAGGAAT
GCCATTGCATTTTAGCAACAAGAAAGGAGACCTCTATATCACATTTGAGG
TACTATTCCCAACAACTCTAACAGAGGATCAGAAGACAAGGATCAAGGAA
GTTCTTGGCTAGGATATATTAAGTAAATGTTTTTATTTGGGTTCTTAGGC
GTTCCCACTGTAACATGATGAGGTCACATTGCAAATTTAGGAACTATTTT
GGGTCTCTTGATAACAAGTAGTGCAAGTCTAAGATGCCTTACTGCATACT
GTCATTGTTTG
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