CX294748

Overview
NameCX294748
Unique NameCX294748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_GRABC (Peptide methionine sulfoxide reductase msrA OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=msrA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.819e-21
Identity = 56/119 (47.06%), Postives = 73/119 (61.34%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQ--KVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ G+  NP+Y++VC+GTT H EVV V +DP   S+  LL +F   HDPTT NRQG DVGTQYRS I   + EQE AA+  L   +  ++    + T I P + FY AE  H  Y A+
Sbjct:   32 GYAGGHTANPTYKEVCTGTTFHAEVVEVTFDPAILSYVDLLRIFLTIHDPTTPNRQGADVGTQYRSVIMPASTEQENAARGVLAEVEAAQIWQAPLSTTIEPLQIFYPAEPEHVDYFAR 150          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_CORGB (Peptide methionine sulfoxide reductase msrA OS=Corynebacterium glutamicum (strain R) GN=msrA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.819e-21
Identity = 54/124 (43.55%), Postives = 72/124 (58.06%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEI--LPAKKFYRAEEYHQQYLAK 354
            VGY+ G+  NP+Y +VCSG T H E+V V YDP + S + L+      HDPT   RQGNDVGTQYRS  Y    E     K  ++   + L +    +I TEI  +   +++ AE+YHQQYL K
Sbjct:   75 VGYAGGFTPNPTYREVCSGRTGHTEIVEVVYDPSKISLEQLVARGLEAHDPTQGFRQGNDVGTQYRSAYYTENEEDAARVKAVVDAYGETLKQHGFGEITTEIGVISPSEYFLAEDYHQQYLDK 198          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_BACSU (Peptide methionine sulfoxide reductase msrA OS=Bacillus subtilis GN=msrA PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.819e-21
Identity = 47/119 (39.50%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLER--QQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ G+  NP+YE+VCS TT H E V++ + P    ++ LL++FW + DPT    Q  D G+ YR+ I+++  +Q++ A+ S +R  +  +    IVT+IL A+ FY AE YHQ +  K
Sbjct:   34 GYTGGHTENPTYEEVCSETTGHREAVQITFHPDVFPYEKLLELFWQQIDPTDAGGQFADRGSSYRAAIFYHNDKQKELAEASKQRLAESGIFKDPIVTDILKAEPFYEAEGYHQHFYKK 152          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_HELHP (Peptide methionine sulfoxide reductase msrA OS=Helicobacter hepaticus GN=msrA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.808e-21
Identity = 50/118 (42.37%), Postives = 69/118 (58.47%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            VGY+   + NPSYE VCSG +   E + + YD        ++  F +  +P  LN QGND+GTQYR+G+YF     E   KE L+  +K  ++K VTE+   + FY AE YHQ+YL K
Sbjct:   29 VGYANSAVENPSYEFVCSGNSGAVEALELHYDEDLLPLREIIGRFLSVINPCALNFQGNDIGTQYRNGVYFVQESDESIIKECLKLWEKKHHKKAVTEVEKLQNFYSAELYHQKYLEK 146          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_CORML (Peptide methionine sulfoxide reductase msrA OS=Corynebacterium melassecola GN=msrA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.808e-21
Identity = 54/124 (43.55%), Postives = 72/124 (58.06%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEI--LPAKKFYRAEEYHQQYLAK 354
            VGY+ G+  NP+Y +VCSG T H E+V V YDP + S + L+      HDPT   RQGNDVGTQYRS  Y    E     K  ++   + L +    +I TEI  +   +++ AE+YHQQYL K
Sbjct:   75 VGYAGGFTPNPTYREVCSGRTGHTEIVEVVYDPSKISLEQLVARGLEAHDPTQGFRQGNDVGTQYRSAYYTENEEGAARVKAVVDAYGETLKQHGFGEITTEIGVISPSEYFLAEDYHQQYLDK 198          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_CORGL (Peptide methionine sulfoxide reductase msrA OS=Corynebacterium glutamicum GN=msrA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.808e-21
Identity = 54/124 (43.55%), Postives = 71/124 (57.26%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEI--LPAKKFYRAEEYHQQYLAK 354
            VGY+ G+  NP+Y +VCSG T H E+V V YDP + S + L+      HDPT   RQGNDVGTQYRS  Y    E     K  ++   + L +    +I TEI  +    ++ AE+YHQQYL K
Sbjct:   75 VGYAGGFTPNPTYREVCSGRTGHTEIVEVVYDPSKISLEQLVARGLEAHDPTQGFRQGNDVGTQYRSAYYTENEEDAARVKAVVDAYGETLKQHGFGEITTEIGVISPSDYFLAEDYHQQYLDK 198          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_LACRD (Peptide methionine sulfoxide reductase msrA OS=Lactobacillus reuteri (strain DSM 20016) GN=msrA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.279e-21
Identity = 49/120 (40.83%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAA---KESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ G++ NP+YE VCSGTT H E V++ +DP + S+  L++++W + DPT  + Q  D G  YR  I+    EQ K A   K++L+   +  + KIVT I   + FY AE+YHQ +  K
Sbjct:   32 GYTGGHVANPTYEQVCSGTTGHTEAVKITFDPDKISYKDLVEIYWHQTDPTDASGQFQDRGDNYRPVIFVKNDEQRKIAEKSKKALQESGRFGDAKIVTTIEDVQPFYPAEDYHQGFYKK 151          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_STRA3 (Peptide methionine sulfoxide reductase msrA OS=Streptococcus agalactiae serotype III GN=msrA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.071e-20
Identity = 47/116 (40.52%), Postives = 74/116 (63.79%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKV--LNRKIVTEILPAKKFYRAEEYHQQY 345
            GY+ G++ NP+Y++VCS TT H E V + ++P++ S+  L++++WA+ DPT    Q  D G  YR  I++   EQ + A++S ++ Q     +R IVT I PA  FY AE+YHQ +
Sbjct:   30 GYTGGHVENPTYKEVCSKTTGHTEAVEIIFNPEKISYANLVELYWAQTDPTDAFGQFEDRGDNYRPVIFYENEEQRQIAQKSKDKLQASGRFDRPIVTSIEPADTFYPAEDYHQAF 145          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRAB_HELPY (Peptide methionine sulfoxide reductase msrA/msrB OS=Helicobacter pylori GN=msrAB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.071e-20
Identity = 50/117 (42.74%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ G   + +YE +    ++H E V+V YDPK+ S D LL  ++   DP ++N+QGNDVG QYR+GIY+     ++    +L+  QK +  KI  E+ P K + RAEEYHQ YL K
Sbjct:   64 GYANGKTSSTNYEKLHE--SDHAESVKVIYDPKKISLDKLLRYYFKVVDPVSVNKQGNDVGRQYRTGIYYVNSADKEVIDHALKALQKEVKGKIAIEVEPLKNYVRAEEYHQDYLKK 178          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRAB_HELPJ (Peptide methionine sulfoxide reductase msrA/msrB OS=Helicobacter pylori J99 GN=msrAB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.071e-20
Identity = 50/117 (42.74%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ G   + +YE +    ++H E V+V YDPK+ S D LL  ++   DP ++N+QGNDVG QYR+GIY+     ++    +L+  QK +  KI  E+ P K + RAEEYHQ YL K
Sbjct:   64 GYANGKTSSTNYEKLHE--SDHAESVKVIYDPKKISLDKLLRYYFKVIDPVSVNKQGNDVGRQYRTGIYYVNSADKEVIDNALKALQKEVKGKIAIEVEPLKNYVRAEEYHQDYLKK 178          
The following BLAST results are available for this feature:
BLAST of CX294748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_GRABC2.819e-2147.06Peptide methionine sulfoxide reductase msrA OS=Gra... [more]
MSRA_CORGB2.819e-2143.55Peptide methionine sulfoxide reductase msrA OS=Cor... [more]
MSRA_BACSU2.819e-2139.50Peptide methionine sulfoxide reductase msrA OS=Bac... [more]
MSRA_HELHP4.808e-2142.37Peptide methionine sulfoxide reductase msrA OS=Hel... [more]
MSRA_CORML4.808e-2143.55Peptide methionine sulfoxide reductase msrA OS=Cor... [more]
MSRA_CORGL4.808e-2143.55Peptide methionine sulfoxide reductase msrA OS=Cor... [more]
MSRA_LACRD6.279e-2140.83Peptide methionine sulfoxide reductase msrA OS=Lac... [more]
MSRA_STRA31.071e-2040.52Peptide methionine sulfoxide reductase msrA OS=Str... [more]
MSRAB_HELPY1.071e-2042.74Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRAB_HELPJ1.071e-2042.74Peptide methionine sulfoxide reductase msrA/msrB O... [more]

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Properties
Property NameValue
Genbank descriptionC05055E02SK FlavSen1 Citrus clementina cDNA clone C05055E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294748 ID=CX294748; Name=CX294748; organism=Citrus clementina; type=EST; length=584bp
GTTGGGTACAGCCAAGGCTACTTGCATAACCCTAGCTACGAGGACGTGTG
CAGTGGGACTACCAATCATAATGAAGTTGTTAGGGTTCAGTATGATCCTA
AGGAGTGTAGTTTCGATACTTTGCTTGATATGTTTTGGGCTCGCCATGAT
CCTACCACGCTTAATCGGCAGGGTAATGATGTTGGAACACAGTACAGATC
TGGAATTTATTTTTACACTCCTGAGCAAGAGAAGGCAGCCAAGGAGTCCT
TGGAGAGACAGCAGAAGGTCTTGAACAGGAAAATTGTCACCGAAATCCTA
CCTGCCAAGAAGTTCTACCGAGCTGAGGAATACCACCAGCAGTATCTTGC
AAAAGGGGGTCGATTTGGATTCAAACAATCTACTGAGAAAGGCTGCAATG
ATCCTATCAGGTGCTATGGCTAAATAGTACCCTGCTATTACAGTTAATTT
TCAGCTTTTTTCTGAATCTTAGCCATTATAACTTGCATTCTTGCTATGAT
AAGAATGCCAGATGTATTTAGTGTCTGAACTTGGGTATGTAACTAGTCAT
AGTCTCTTAAACCATCATCTATATCTGTAATTTC
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