CX294748

Overview
NameCX294748
Unique NameCX294748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_LISMH (Peptide methionine sulfoxide reductase msrA OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=msrA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.943e-20
Identity = 47/120 (39.17%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKES---LERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ G+  NP+Y++VCSGTT H E +++ +DP    ++ L++++W + DPT    Q  D G  YR  I+++  EQ++ A++S   L+   +   + IVTEI  A+ FY AEEYHQ +  K
Sbjct:   35 GYTGGHTVNPTYKEVCSGTTGHTEAIQITFDPAVFPYEKLVEVYWQQTDPTDAAGQFVDRGDSYRPVIFYHNEEQKEIAEKSKAALDASGR-FKKPIVTEIAKAETFYPAEEYHQDFYKK 153          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_LISMF (Peptide methionine sulfoxide reductase msrA OS=Listeria monocytogenes serotype 4b (strain F2365) GN=msrA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.943e-20
Identity = 47/120 (39.17%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKES---LERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ G+  NP+Y++VCSGTT H E +++ +DP    ++ L++++W + DPT    Q  D G  YR  I+++  EQ++ A++S   L+   +   + IVTEI  A+ FY AEEYHQ +  K
Sbjct:   35 GYTGGHTVNPTYKEVCSGTTGHTEAIQITFDPAVFPYEKLVEVYWQQTDPTDAAGQFVDRGDSYRPVIFYHNEEQKEIAEKSKAALDASGR-FKKPIVTEIAKAETFYPAEEYHQDFYKK 153          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_LISMC (Peptide methionine sulfoxide reductase msrA OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=msrA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.943e-20
Identity = 47/120 (39.17%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKES---LERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ G+  NP+Y++VCSGTT H E +++ +DP    ++ L++++W + DPT    Q  D G  YR  I+++  EQ++ A++S   L+   +   + IVTEI  A+ FY AEEYHQ +  K
Sbjct:   35 GYTGGHTVNPTYKEVCSGTTGHTEAIQITFDPAVFPYEKLVEVYWQQTDPTDAAGQFVDRGDSYRPVIFYHNEEQKEIAEKSKAALDASGR-FKKPIVTEIAKAETFYPAEEYHQDFYKK 153          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_STRU0 (Peptide methionine sulfoxide reductase msrA OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=msrA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.067e-20
Identity = 47/119 (39.50%), Postives = 71/119 (59.66%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKV--LNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ G++ NPSYE VCS TT H E V + +DP++  +  L++++W + DPT    Q  D G  YR  I+++   Q++ A++S E  Q        IVT+I  A+ FY AE+YHQ +  K
Sbjct:   30 GYTGGHVPNPSYEQVCSKTTGHTEAVEIIFDPQKIDYSDLVELYWQQTDPTDAFGQFEDRGDNYRPVIFYFDERQKEIAEQSRENLQLSGRFQDPIVTQIEEAQPFYLAEDYHQAFYRK 148          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_LISIN (Peptide methionine sulfoxide reductase msrA OS=Listeria innocua GN=msrA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.184e-19
Identity = 47/120 (39.17%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKES---LERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ G+  NP+Y++VCSGTT H E V + +DP    ++ L++++W + DPT    Q  D G  YR  I+++  EQ + A++S   L+   +   + +VTEI  A+ FY AEEYHQ +  K
Sbjct:   35 GYTGGHTVNPTYKEVCSGTTGHTEAVEITFDPAVFPYEKLVEVYWQQTDPTDAAGQFVDRGDSYRPVIFYHNEEQRQIAEKSKAALDASGR-FKKPVVTEIAKAETFYPAEEYHQDFYKK 153          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_LACSS (Peptide methionine sulfoxide reductase msrA OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=msrA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.638e-19
Identity = 48/119 (40.34%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLER--QQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ G++ NP+YE VCS TT H E V + +DP   S+  L++++W + DPT    Q  D G  YR  I+  + +Q   A+ S E+       N  IVT+I  AK FY AE+YHQ +  K
Sbjct:   32 GYTGGHVANPTYEQVCSHTTGHTEAVEITFDPAVISYAELVEIYWRQTDPTDAMGQFQDRGDSYRPVIFVNSDQQRSIAEASKEKLIASGRFNEPIVTQIEAAKPFYPAEDYHQDFYKK 150          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_MYCSS (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium sp. (strain MCS) GN=msrA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.446e-19
Identity = 48/120 (40.00%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            VGY+ G   +P+Y +       H E + + YDP +  +  LL+ F+  HDPTT NRQGNDVGT YRS I++   EQ++ A +++       +   K+VTE+ PA +F+ AE  HQ YL +
Sbjct:   32 VGYTGGQNDHPTYRN----HPGHAESIEITYDPAQTDYRALLEFFFQIHDPTTKNRQGNDVGTSYRSAIFYVDDEQKRVALDTIADVDASGLWPGKVVTEVTPAGEFWEAEPEHQDYLER 147          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_MYCSK (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium sp. (strain KMS) GN=msrA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.446e-19
Identity = 48/120 (40.00%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            VGY+ G   +P+Y +       H E + + YDP +  +  LL+ F+  HDPTT NRQGNDVGT YRS I++   EQ++ A +++       +   K+VTE+ PA +F+ AE  HQ YL +
Sbjct:   32 VGYTGGQNDHPTYRN----HPGHAESIEITYDPAQTDYRALLEFFFQIHDPTTKNRQGNDVGTSYRSAIFYVDDEQKRVALDTIADVDASGLWPGKVVTEVTPAGEFWEAEPEHQDYLER 147          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_NOCFA (Peptide methionine sulfoxide reductase msrA OS=Nocardia farcinica GN=msrA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.500e-19
Identity = 47/120 (39.17%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            VGY+ G   +P+Y +       H E V + YDP+   +  LL+ F+  HDPTT +RQGND+GT YRS I++   EQ + A++++       +   K+VTE+ PA +F+ AE  HQ YL +
Sbjct:   32 VGYTGGTNDHPTYRN----HPGHAEAVEIVYDPERTDYRALLEFFFQIHDPTTKDRQGNDIGTSYRSAIFYLDDEQRRVAEDTIADVDASGLWPGKVVTEVTPASEFWEAEPEHQDYLLR 147          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_MYCUA (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium ulcerans (strain Agy99) GN=msrA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.500e-19
Identity = 52/120 (43.33%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            VGYS G + N +Y +   GT  H E V + +DP+   + TLL+ F+  HDPTT NRQGND GT YRS IY+   EQ++ A +++       +   K+VTE+ PA  F+ AE  HQ YL +
Sbjct:   32 VGYSGGDVANATYRN--HGT--HAEAVEIIFDPQATDYRTLLEFFFQIHDPTTPNRQGNDRGTSYRSAIYYLDDEQKRVALDTIADVEASGLWPGKVVTEVSPAGDFWEAEPEHQHYLQR 147          
The following BLAST results are available for this feature:
BLAST of CX294748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_LISMH6.943e-2039.17Peptide methionine sulfoxide reductase msrA OS=Lis... [more]
MSRA_LISMF6.943e-2039.17Peptide methionine sulfoxide reductase msrA OS=Lis... [more]
MSRA_LISMC6.943e-2039.17Peptide methionine sulfoxide reductase msrA OS=Lis... [more]
MSRA_STRU09.067e-2039.50Peptide methionine sulfoxide reductase msrA OS=Str... [more]
MSRA_LISIN1.184e-1939.17Peptide methionine sulfoxide reductase msrA OS=Lis... [more]
MSRA_LACSS2.638e-1940.34Peptide methionine sulfoxide reductase msrA OS=Lac... [more]
MSRA_MYCSS3.446e-1940.00Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_MYCSK3.446e-1940.00Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_NOCFA4.500e-1939.17Peptide methionine sulfoxide reductase msrA OS=Noc... [more]
MSRA_MYCUA4.500e-1943.33Peptide methionine sulfoxide reductase msrA OS=Myc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05055E02SK FlavSen1 Citrus clementina cDNA clone C05055E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294748 ID=CX294748; Name=CX294748; organism=Citrus clementina; type=EST; length=584bp
GTTGGGTACAGCCAAGGCTACTTGCATAACCCTAGCTACGAGGACGTGTG
CAGTGGGACTACCAATCATAATGAAGTTGTTAGGGTTCAGTATGATCCTA
AGGAGTGTAGTTTCGATACTTTGCTTGATATGTTTTGGGCTCGCCATGAT
CCTACCACGCTTAATCGGCAGGGTAATGATGTTGGAACACAGTACAGATC
TGGAATTTATTTTTACACTCCTGAGCAAGAGAAGGCAGCCAAGGAGTCCT
TGGAGAGACAGCAGAAGGTCTTGAACAGGAAAATTGTCACCGAAATCCTA
CCTGCCAAGAAGTTCTACCGAGCTGAGGAATACCACCAGCAGTATCTTGC
AAAAGGGGGTCGATTTGGATTCAAACAATCTACTGAGAAAGGCTGCAATG
ATCCTATCAGGTGCTATGGCTAAATAGTACCCTGCTATTACAGTTAATTT
TCAGCTTTTTTCTGAATCTTAGCCATTATAACTTGCATTCTTGCTATGAT
AAGAATGCCAGATGTATTTAGTGTCTGAACTTGGGTATGTAACTAGTCAT
AGTCTCTTAAACCATCATCTATATCTGTAATTTC
back to top