CX294748

Overview
NameCX294748
Unique NameCX294748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_MYCMM (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=msrA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.500e-19
Identity = 52/120 (43.33%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            VGYS G + N +Y +   GT  H E V + +DP+   + TLL+ F+  HDPTT NRQGND GT YRS IY+   EQ++ A +++       +   K+VTE+ PA  F+ AE  HQ YL +
Sbjct:   32 VGYSGGDVANATYRN--HGT--HAEAVEIIFDPQATDYRTLLEFFFQIHDPTTPNRQGNDRGTSYRSAIYYLDDEQKRVALDTIADVEASGLWPGKVVTEVSPAGDFWEAEPEHQDYLQR 147          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_LISW6 (Peptide methionine sulfoxide reductase msrA OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=msrA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.500e-19
Identity = 47/120 (39.17%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKES---LERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ G+  NP+Y++VCSGTT H E + + +DP    ++ L++++W + DPT    Q  D G  YR  I+ +  EQ++ A++S   L+   +   + IVTEI  A+ FY AEEYHQ +  K
Sbjct:   35 GYTGGHTVNPTYKEVCSGTTGHTEAIEITFDPAIFPYEKLVEVYWQQTDPTDAAGQFVDRGDSYRPVIFCHNDEQKEIAEKSKAALDASGR-FKKPIVTEIAKAETFYPAEEYHQDFYKK 153          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_LEUMM (Peptide methionine sulfoxide reductase msrA OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=msrA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.877e-19
Identity = 47/119 (39.50%), Postives = 70/119 (58.82%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ G++ NP+YE V + TT H E V++ +D ++ S+  L++++W + DPT    Q  D G  YR  I+  +PEQ + A+ES          +  IVT+I  AK FY AEEYHQ +  K
Sbjct:   32 GYTGGHVENPTYEQVLTHTTGHTEAVKIWFDSEKISYRELVEIYWEQTDPTDAMGQFQDRGDNYRPVIFVNSPEQREIAEESRAALAASNRFDEPIVTKIEDAKPFYEAEEYHQDFYKK 150          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_MYCSJ (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium sp. (strain JLS) GN=msrA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.676e-19
Identity = 47/120 (39.17%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            VGY+ G   +P+Y +       H E + + YDP +  +  LL+ F+  HDPTT NRQGNDVGT YRS I++   +Q++ A +++       +   K+VTE+ PA +F+ AE  HQ YL +
Sbjct:   32 VGYTGGQNDHPTYRN----HPGHAESIEITYDPAQTDYRALLEFFFQIHDPTTKNRQGNDVGTSYRSAIFYVDDDQKRVALDTIADVDASGLWPGKVVTEVTPAGEFWEAEPEHQDYLER 147          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA3_RHIME (Peptide methionine sulfoxide reductase msrA 3 OS=Rhizobium meliloti GN=msrA3 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.676e-19
Identity = 48/120 (40.00%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            VGY+ G + N +Y +   GT  H E + + +DP+  S+  +L++F+  HDPTT +RQGND+GT YRS IY+   EQ++ A+E++       +   K+VTE+ P + F+ AE  HQ YL +
Sbjct:   30 VGYTGGDVPNATYRN--HGT--HAEGIEIIFDPERISYRRILELFFQIHDPTTKDRQGNDIGTSYRSAIYYVDDEQKRIAQETIADVEASGLWPGKVVTEVEPVRDFWEAEPEHQNYLER 145          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_MYCVP (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=msrA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.710e-18
Identity = 47/120 (39.17%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            VGY+ G   +P+Y +       H E + + YDP +  +  LL+ F+  HDPTT NRQGNDVGT YRS I++   EQ + A +++       +   K+VT++ PA +F+ AE  HQ YL +
Sbjct:   32 VGYTGGQNDHPTYRN----HPGHAEAIEIVYDPAQTDYRALLEFFFQIHDPTTKNRQGNDVGTSYRSEIFYVDDEQRRIALDTIADVDASGLWPGKVVTDVSPAPEFWEAEPEHQDYLER 147          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_MYCGI (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium gilvum (strain PYR-GCK) GN=msrA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.233e-18
Identity = 47/120 (39.17%), Postives = 69/120 (57.50%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            VGY+ G   +P+Y +       H E + + YDP +  +  LL+ F+  HDPTT NRQGND+GT YRS I++   EQ + A +++       +   K+VTE+ PA  F+ AE  HQ YL +
Sbjct:   32 VGYTGGQNDHPTYRN----HPGHAEAIEIVYDPAQTDYRALLEFFFQIHDPTTKNRQGNDIGTSYRSEIFYVDEEQRQIALDTIADVDASGLWPGKVVTEVSPAPDFWEAEPEHQDYLER 147          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRAB_HAEIN (Peptide methionine sulfoxide reductase msrA/msrB OS=Haemophilus influenzae GN=msrAB PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.233e-18
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ G     SY+ +  G T+H E V+V YD  + S D LL  ++   DPT++N+QGND G QYR+GIY+     +    ++L + Q    + +  E+ P K +  AEEYHQ YL K
Sbjct:   71 GYANGNTEKTSYQMI--GLTDHAETVKVTYDANQISLDKLLKYYFKVIDPTSVNKQGNDRGRQYRTGIYYQDGADKAVIGQALAQLQTKYKKPVQIEVQPLKNYIVAEEYHQDYLKK 185          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA2_SYNY3 (Peptide methionine sulfoxide reductase msrA 2 OS=Synechocystis sp. (strain PCC 6803) GN=msrA2 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.233e-18
Identity = 47/120 (39.17%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWA-RHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLER--QQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GYS G     +Y  V  G T+H E + + YDP + S+  LL +F++  HDPT +NRQG D G QYRS I+  TPEQ++ A+  +++  + +  ++ I TE+     FY AE+YHQ ++ +
Sbjct:   65 GYSGGTEATANYARVSGGGTDHAESIEIVYDPAQVSYGELLKIFFSVGHDPTQVNRQGVDQGRQYRSAIFATTPEQKQVAQAYIDQLEESQAFDQAIATEVNDFDAFYPAEDYHQDFVQR 184          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA2_CAUCR (Peptide methionine sulfoxide reductase msrA 2 OS=Caulobacter crescentus GN=msrA2 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.233e-18
Identity = 55/137 (40.15%), Postives = 73/137 (53.28%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKES-LERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIR 411
            GY+ G+L NP+Y DV S T+ H E VRV YDP +  +  LL  +W   DPT    Q  D G  YR  + F TP Q   A++S  E  +++    + T+ILPA+ FY AEEYH+ Y  +     F   T  GC    R
Sbjct:   56 GYTGGHLKNPTYRDVTSETSGHYEAVRVTYDPAKLDYGFLLYRYWRLVDPTDDGGQFCDRGPSYRPAV-FVTPAQRPIAEKSRTEAAKRLKTGTMKTQILPAQTFYLAEEYHRDYAKRNKLNYFAYRT--GCGRDAR 189          
The following BLAST results are available for this feature:
BLAST of CX294748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_MYCMM4.500e-1943.33Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_LISW64.500e-1939.17Peptide methionine sulfoxide reductase msrA OS=Lis... [more]
MSRA_LEUMM5.877e-1939.50Peptide methionine sulfoxide reductase msrA OS=Leu... [more]
MSRA_MYCSJ7.676e-1939.17Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA3_RHIME7.676e-1940.00Peptide methionine sulfoxide reductase msrA 3 OS=R... [more]
MSRA_MYCVP1.710e-1839.17Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_MYCGI2.233e-1839.17Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRAB_HAEIN2.233e-1839.32Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRA2_SYNY32.233e-1839.17Peptide methionine sulfoxide reductase msrA 2 OS=S... [more]
MSRA2_CAUCR2.233e-1840.15Peptide methionine sulfoxide reductase msrA 2 OS=C... [more]

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Properties
Property NameValue
Genbank descriptionC05055E02SK FlavSen1 Citrus clementina cDNA clone C05055E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294748 ID=CX294748; Name=CX294748; organism=Citrus clementina; type=EST; length=584bp
GTTGGGTACAGCCAAGGCTACTTGCATAACCCTAGCTACGAGGACGTGTG
CAGTGGGACTACCAATCATAATGAAGTTGTTAGGGTTCAGTATGATCCTA
AGGAGTGTAGTTTCGATACTTTGCTTGATATGTTTTGGGCTCGCCATGAT
CCTACCACGCTTAATCGGCAGGGTAATGATGTTGGAACACAGTACAGATC
TGGAATTTATTTTTACACTCCTGAGCAAGAGAAGGCAGCCAAGGAGTCCT
TGGAGAGACAGCAGAAGGTCTTGAACAGGAAAATTGTCACCGAAATCCTA
CCTGCCAAGAAGTTCTACCGAGCTGAGGAATACCACCAGCAGTATCTTGC
AAAAGGGGGTCGATTTGGATTCAAACAATCTACTGAGAAAGGCTGCAATG
ATCCTATCAGGTGCTATGGCTAAATAGTACCCTGCTATTACAGTTAATTT
TCAGCTTTTTTCTGAATCTTAGCCATTATAACTTGCATTCTTGCTATGAT
AAGAATGCCAGATGTATTTAGTGTCTGAACTTGGGTATGTAACTAGTCAT
AGTCTCTTAAACCATCATCTATATCTGTAATTTC
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