CX294748

Overview
NameCX294748
Unique NameCX294748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_THEVU (Peptide methionine sulfoxide reductase msrA OS=Thermoactinomyces vulgaris GN=msrA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.891e-17
Identity = 40/87 (45.98%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQ 261
            VGY  G   NP+YE+VC+  T H EVV+V+YDP++ S++ LL++FW  H+PTTLNRQG DVGT   + ++F T + ++  +++ +R+
Sbjct:   27 VGYMGGTTENPTYEEVCTDKTGHAEVVQVEYDPEQVSYEELLNVFWDNHNPTTLNRQGPDVGTNI-ARLFFTTLKSKEIPQKNPKRK 112          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_MYCLE (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium leprae GN=msrA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17
Identity = 49/118 (41.53%), Postives = 67/118 (56.78%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYL 348
            VGY+ G   N +Y +       H E V + YDP    + TLL+ F+  HDPTT NRQGND GT YRS I++   EQ+K A +++       +   K+VTE+  A+ F+ AE  HQ YL
Sbjct:   34 VGYTGGGTPNATYRN----HGMHAEAVEIIYDPAITDYRTLLEFFFQIHDPTTRNRQGNDQGTSYRSAIFYLDDEQKKVALDTIAAVEASSLWPGKVVTEVSLAEDFWEAEPEHQDYL 147          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_MYCLB (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium leprae (strain Br4923) GN=msrA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17
Identity = 49/118 (41.53%), Postives = 67/118 (56.78%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYL 348
            VGY+ G   N +Y +       H E V + YDP    + TLL+ F+  HDPTT NRQGND GT YRS I++   EQ+K A +++       +   K+VTE+  A+ F+ AE  HQ YL
Sbjct:   34 VGYTGGGTPNATYRN----HGMHAEAVEIIYDPAITDYRTLLEFFFQIHDPTTRNRQGNDQGTSYRSAIFYLDDEQKKVALDTIAAVEASSLWPGKVVTEVSLAEDFWEAEPEHQDYL 147          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_STRCO (Peptide methionine sulfoxide reductase msrA OS=Streptomyces coelicolor GN=msrA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 46/120 (38.33%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            VGY+ G + N +Y +   GT  H E + + +DP+   +  LL+ F+  HDP+T NRQGND+G  YRS IY+   EQ++ A++++       +   K+VTE+ P   F+ AE  HQ YL +
Sbjct:   33 VGYTGGDVPNATYRN--HGT--HAEAIEILFDPEATDYRALLEFFFQIHDPSTKNRQGNDIGLSYRSAIYYVDDEQKRIAEDTIADVDASGLWPGKVVTEVEPVGPFWEAEPEHQDYLQR 148          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_STRAW (Peptide methionine sulfoxide reductase msrA OS=Streptomyces avermitilis GN=msrA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 46/120 (38.33%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            VGY+ G + N +Y +   GT  H E + + +DP    F  +L+ F+  HDP+T NRQGND+G  YRS IY+   EQ++ A++++       +   K+VTE+ P   F+ AE  HQ YL +
Sbjct:   33 VGYTGGDVPNATYRN--HGT--HAEAIEILFDPARTDFRAILEFFFQIHDPSTKNRQGNDIGLSYRSAIYYVDDEQKRIAEDTIADVDASGLWPGKVVTEVEPVGPFWEAEPEHQDYLER 148          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRAB_AGGAC (Peptide methionine sulfoxide reductase msrA/msrB OS=Aggregatibacter actinomycetemcomitans GN=msrAB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 45/117 (38.46%), Postives = 65/117 (55.56%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ G     +Y+ +  G T+H E V+V YD  + S D LL  ++   DPT++N+QGND G QYR+GIY+     +   ++ +   Q     KI  E+ P   +  AEEYHQ YL K
Sbjct:   74 GYANGKSDKTNYQKI--GITDHAETVKVTYDRNKVSLDKLLKYYFQVIDPTSVNKQGNDRGRQYRTGIYYQDTADKSIIEKEITALQGKYKNKIQIEVEPLHNYIVAEEYHQDYLKK 188          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA1_LACLA (Peptide methionine sulfoxide reductase msrA 1 OS=Lactococcus lactis subsp. lactis GN=msrA1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.225e-17
Identity = 47/119 (39.50%), Postives = 70/119 (58.82%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQK--VLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ G++  P+Y+ V S  + H E V + +D +  S+D LLD++W+  DPT  + Q  D G  YR  I+  + EQ  AA++S    +K  + ++ IV  I  AK F+ AEEYHQQY  K
Sbjct:   32 GYTGGHIEYPTYDQVLSKASGHTEAVEILFDNELISYDELLDIYWSLIDPTDADGQIYDRGANYRPVIFVESEEQRIAAQKSKIALEKSGIWDKPIVVPIEEAKTFWPAEEYHQQYYKK 150          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_MYCA5 (Peptide methionine sulfoxide reductase msrA OS=Mycoplasma arthritidis (strain 158L3-1) GN=msrA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.501e-17
Identity = 48/118 (40.68%), Postives = 61/118 (51.69%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            VGY+   L NP+YE V S  T+  E V V YD    S   ++   +A  DPT  N QG D G QYR+G YF   E     +E +    K   + + TEILP   +Y AE+YHQ Y  K
Sbjct:   29 VGYANSLLENPTYELVKSHVTDAVETVEVIYDENILSLKDIVKKLFAVIDPTARNYQGPDHGRQYRNGFYFVDQEDGVMLRELMLEFSKKYEKPLATEILPLDNYYLAEDYHQDYFDK 146          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRAB_STRP3 (Peptide methionine sulfoxide reductase msrA/msrB OS=Streptococcus pyogenes serotype M3 GN=msrAB PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 7.185e-17
Identity = 49/117 (41.88%), Postives = 63/117 (53.85%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ G     +Y+ +    T H E V V YD    S   LL  F+   DPT+LN+QGND G+QYR+GIY+          E  + + K   +KIV E  P K F +AEEYHQ YL K
Sbjct:   28 GYANGRGDTTNYQLIHQ--TGHAETVEVTYDANRISLKELLLHFFRIIDPTSLNKQGNDRGSQYRTGIYYTDKADLAIIDEVFKEKAKDYKKKIVVEKAPLKHFIKAEEYHQDYLKK 142          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSAB1_STRR6 (Peptide methionine sulfoxide reductase msrA/msrB 1 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=msrAB1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17
Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            VGY+ G +   +Y+ +    T+H E V+V YD KE S   +L  ++   DP ++N+QGND G QYR+GIY+       A    ++ Q+++L RKI  E+   + +  AE+YHQ YL K
Sbjct:   29 VGYANGQVETTNYQLLKE--TDHAETVQVIYDEKEVSLREILLYYFRVIDPLSINQQGNDRGRQYRTGIYYQDEADLPAIYTVVQEQERMLGRKIAVEVEQLRHYILAEDYHQDYLRK 144          
The following BLAST results are available for this feature:
BLAST of CX294748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_THEVU1.891e-1745.98Peptide methionine sulfoxide reductase msrA OS=The... [more]
MSRA_MYCLE2.469e-1741.53Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_MYCLB2.469e-1741.53Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_STRCO3.225e-1738.33Peptide methionine sulfoxide reductase msrA OS=Str... [more]
MSRA_STRAW3.225e-1738.33Peptide methionine sulfoxide reductase msrA OS=Str... [more]
MSRAB_AGGAC3.225e-1738.46Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRA1_LACLA3.225e-1739.50Peptide methionine sulfoxide reductase msrA 1 OS=L... [more]
MSRA_MYCA55.501e-1740.68Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRAB_STRP37.185e-1741.88Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSAB1_STRR69.383e-1738.14Peptide methionine sulfoxide reductase msrA/msrB 1... [more]

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Properties
Property NameValue
Genbank descriptionC05055E02SK FlavSen1 Citrus clementina cDNA clone C05055E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294748 ID=CX294748; Name=CX294748; organism=Citrus clementina; type=EST; length=584bp
GTTGGGTACAGCCAAGGCTACTTGCATAACCCTAGCTACGAGGACGTGTG
CAGTGGGACTACCAATCATAATGAAGTTGTTAGGGTTCAGTATGATCCTA
AGGAGTGTAGTTTCGATACTTTGCTTGATATGTTTTGGGCTCGCCATGAT
CCTACCACGCTTAATCGGCAGGGTAATGATGTTGGAACACAGTACAGATC
TGGAATTTATTTTTACACTCCTGAGCAAGAGAAGGCAGCCAAGGAGTCCT
TGGAGAGACAGCAGAAGGTCTTGAACAGGAAAATTGTCACCGAAATCCTA
CCTGCCAAGAAGTTCTACCGAGCTGAGGAATACCACCAGCAGTATCTTGC
AAAAGGGGGTCGATTTGGATTCAAACAATCTACTGAGAAAGGCTGCAATG
ATCCTATCAGGTGCTATGGCTAAATAGTACCCTGCTATTACAGTTAATTT
TCAGCTTTTTTCTGAATCTTAGCCATTATAACTTGCATTCTTGCTATGAT
AAGAATGCCAGATGTATTTAGTGTCTGAACTTGGGTATGTAACTAGTCAT
AGTCTCTTAAACCATCATCTATATCTGTAATTTC
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