CX294748

Overview
NameCX294748
Unique NameCX294748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSAB1_STRPN (Peptide methionine sulfoxide reductase msrA/msrB 1 OS=Streptococcus pneumoniae GN=msrAB1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17
Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            VGY+ G +   +Y+ +    T+H E V+V YD KE S   +L  ++   DP ++N+QGND G QYR+GIY+       A    ++ Q+++L RKI  E+   + +  AE+YHQ YL K
Sbjct:   29 VGYANGQVETTNYQLLKE--TDHAETVQVIYDEKEVSLREILLYYFRVIDPLSINQQGNDRGRQYRTGIYYQDEADLPAIYTVVQEQERMLGRKIAVEVEQLRHYILAEDYHQDYLRK 144          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRAB_STRP8 (Peptide methionine sulfoxide reductase msrA/msrB OS=Streptococcus pyogenes serotype M18 GN=msrAB PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.601e-16
Identity = 48/117 (41.03%), Postives = 63/117 (53.85%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ G     +Y+ +    T H E V V YD    S   LL  F+   DPT+LN+QGND G+QYR+GIY+          E  + + K   +KIV E  P K F +AE+YHQ YL K
Sbjct:   28 GYANGRGDTTNYQLIHQ--TGHAETVEVAYDTNRISLKELLLHFFRIIDPTSLNKQGNDRGSQYRTGIYYTDKADLAIIDEVFKEKAKDYKKKIVVEKAPLKHFIKAEDYHQDYLKK 142          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRAB_STRP6 (Peptide methionine sulfoxide reductase msrA/msrB OS=Streptococcus pyogenes serotype M6 GN=msrAB PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.601e-16
Identity = 48/117 (41.03%), Postives = 63/117 (53.85%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ G     +Y+ +    T H E V V YD    S   LL  F+   DPT+LN+QGND G+QYR+GIY+          E  + + K   +KIV E  P K F +AE+YHQ YL K
Sbjct:   28 GYANGRGDTTNYQLIHQ--TGHAETVEVAYDANRISLKELLLHFFRIIDPTSLNKQGNDRGSQYRTGIYYTDKADLAIIDEVFKEKAKDYKKKIVVEKAPLKHFIKAEDYHQDYLKK 142          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRAB_STRP1 (Peptide methionine sulfoxide reductase msrA/msrB OS=Streptococcus pyogenes serotype M1 GN=msrAB PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.601e-16
Identity = 48/117 (41.03%), Postives = 63/117 (53.85%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ G     +Y+ +    T H E V V YD    S   LL  F+   DPT+LN+QGND G+QYR+GIY+          E  + + K   +KIV E  P K F +AE+YHQ YL K
Sbjct:   28 GYANGRGDTTNYQLIHQ--TGHAETVEVAYDANRISLKELLLHFFRIIDPTSLNKQGNDRGSQYRTGIYYTDKADLAIIDEVFKEKAKDYKKKIVVEKAPLKHFIKAEDYHQDYLKK 142          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_PSEFL (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas fluorescens GN=msrA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.730e-16
Identity = 45/120 (37.50%), Postives = 68/120 (56.67%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            VGY+ G + N +Y +      NH E + + +DP   S+  +L+ F+  HDP+T NRQGND+G  YRS IY+   +Q   A+++        +   ++VTEI PA  F+ AE  HQ YL +
Sbjct:   33 VGYTGGDVPNATYRN----HGNHAEAIEIVFDPAVISYRQILEFFFQIHDPSTPNRQGNDLGPSYRSAIYYLNEQQRDIAEDTAADVDASHLWPGRVVTEIEPAGPFWEAEPEHQDYLER 148          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA2_RHILO (Peptide methionine sulfoxide reductase msrA 2 OS=Rhizobium loti GN=msrA2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.566e-16
Identity = 47/118 (39.83%), Postives = 69/118 (58.47%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWA-RHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLER--QQKVLNRKIVTEILPAKKFYRAEEYHQQYL 348
            GY+ G   +  YE V +G T H E V + YDP + ++  LL ++++  H+PT LN QG D GTQYRS I+     Q++ A+  +++  + K+    IVT I   K FY AE YHQ +L
Sbjct:   38 GYTGGAKDDAVYETVGTGRTGHAESVEITYDPSKVTYGQLLQVYFSVAHNPTQLNFQGPDSGTQYRSTIFAENDTQKQIAQSYIDQLDKAKLYPAPIVTTIETGKTFYPAENYHQDFL 155          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA2_LACLA (Peptide methionine sulfoxide reductase msrA 2 OS=Lactococcus lactis subsp. lactis GN=msrA2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.566e-16
Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLN--RKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ G + NP+YE V    T H E V + +D  + ++ +L++++W   DPT    Q  D G  YR  I+    EQEK AKES  + Q   N    IVT I   +KF+ AE+YHQ +  K
Sbjct:   32 GYTGGNVENPTYEQVKKHLTGHTEAVEIIFDNSKITYQSLVELYWTLTDPTDAFGQFEDRGDNYRPVIFVENEEQEKIAKESKAQLQASGNFDSPIVTSIETVQKFWPAEDYHQGFYKK 150          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_MYCPA (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium paratuberculosis GN=msrA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.657e-16
Identity = 47/120 (39.17%), Postives = 69/120 (57.50%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            VGY+ G + N +Y +   GT  H E V + YDP    +  +L+ F+  HDPTT +RQGND G  YRS I++   EQ++ A +++       +   K+VTE+ PA  F+ AE  HQ YL +
Sbjct:   32 VGYTGGDVPNATYRN--HGT--HAEAVEIIYDPAVTDYRQILEFFFQIHDPTTKDRQGNDRGPSYRSAIFYTDDEQKRIALDTIADVEASGLWPGKVVTEVSPAGDFWEAEPEHQDYLQR 147          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRAB_CAMFE (Peptide methionine sulfoxide reductase msrA/msrB OS=Campylobacter fetus GN=msrAB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.770e-15
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            VGY+ G      Y  +    + H E V + +D    S   +L  ++   DP ++N+QGNDVG+QYR+GIY+     + +  E ++ +Q   ++KI  E+ P K +  AE+YHQ+YL K
Sbjct:   55 VGYANGKSDKTDYHSL--HYSGHAETVHITFDENIVSLAEILAHYFRIIDPFSVNKQGNDVGSQYRTGIYYNDSSLKNSISEFIKHEQTKYDKKIAVEVEPLKNYVLAEDYHQKYLDK 170          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_NITWN (Peptide methionine sulfoxide reductase msrA OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=msrA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.957e-14
Identity = 43/120 (35.83%), Postives = 68/120 (56.67%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLER--QQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            VGY+ G + + +Y +      +H E + V +DP   S+  LL+ F+  HDPTT +RQG D G  YRS I++   EQ++ A+E++       +    +VT++ PA  F+ AE  HQ YL +
Sbjct:   33 VGYTGGDVPDATYRN----HGDHAEAIEVNFDPTVTSYRQLLEFFFQIHDPTTEDRQGYDQGLSYRSAIFYTNEEQKRIAEETIAEIDASGLWPGYVVTDVEPAGPFWEAEPEHQDYLER 148          
The following BLAST results are available for this feature:
BLAST of CX294748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSAB1_STRPN9.383e-1738.14Peptide methionine sulfoxide reductase msrA/msrB 1... [more]
MSRAB_STRP81.601e-1641.03Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRAB_STRP61.601e-1641.03Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRAB_STRP11.601e-1641.03Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRA_PSEFL2.730e-1637.50Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA2_RHILO3.566e-1639.83Peptide methionine sulfoxide reductase msrA 2 OS=R... [more]
MSRA2_LACLA3.566e-1638.66Peptide methionine sulfoxide reductase msrA 2 OS=L... [more]
MSRA_MYCPA4.657e-1639.17Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRAB_CAMFE1.770e-1534.75Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRA_NITWN1.957e-1435.83Peptide methionine sulfoxide reductase msrA OS=Nit... [more]

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Properties
Property NameValue
Genbank descriptionC05055E02SK FlavSen1 Citrus clementina cDNA clone C05055E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294748 ID=CX294748; Name=CX294748; organism=Citrus clementina; type=EST; length=584bp
GTTGGGTACAGCCAAGGCTACTTGCATAACCCTAGCTACGAGGACGTGTG
CAGTGGGACTACCAATCATAATGAAGTTGTTAGGGTTCAGTATGATCCTA
AGGAGTGTAGTTTCGATACTTTGCTTGATATGTTTTGGGCTCGCCATGAT
CCTACCACGCTTAATCGGCAGGGTAATGATGTTGGAACACAGTACAGATC
TGGAATTTATTTTTACACTCCTGAGCAAGAGAAGGCAGCCAAGGAGTCCT
TGGAGAGACAGCAGAAGGTCTTGAACAGGAAAATTGTCACCGAAATCCTA
CCTGCCAAGAAGTTCTACCGAGCTGAGGAATACCACCAGCAGTATCTTGC
AAAAGGGGGTCGATTTGGATTCAAACAATCTACTGAGAAAGGCTGCAATG
ATCCTATCAGGTGCTATGGCTAAATAGTACCCTGCTATTACAGTTAATTT
TCAGCTTTTTTCTGAATCTTAGCCATTATAACTTGCATTCTTGCTATGAT
AAGAATGCCAGATGTATTTAGTGTCTGAACTTGGGTATGTAACTAGTCAT
AGTCTCTTAAACCATCATCTATATCTGTAATTTC
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