CX294748

Overview
NameCX294748
Unique NameCX294748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8314 contig Ccv1_Contig8314:452..1035. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSAB2_STRR6 (Peptide methionine sulfoxide reductase msrA/msrB 2 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=msrAB2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 42/117 (35.90%), Postives = 62/117 (52.99%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ G      YE +    T H E V V YD K+ S   +L  ++   +PT+ N+QGNDVGTQYR+G+Y+   +  +   +  +   K  ++ +  E    K F  AE+YHQ YL K
Sbjct:   30 GYANGRGETTKYELI--NQTGHAETVHVTYDAKQISLKEILLHYFRIINPTSKNKQGNDVGTQYRTGVYYTDDKDLEVINQVFDEVAKKYDQPLAVEKENLKNFVVAEDYHQDYLKK 144          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSAB2_STRPN (Peptide methionine sulfoxide reductase msrA/msrB 2 OS=Streptococcus pneumoniae GN=msrAB2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 42/117 (35.90%), Postives = 62/117 (52.99%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GY+ G      YE +    T H E V V YD K+ S   +L  ++   +PT+ N+QGNDVGTQYR+G+Y+   +  +   +  +   K  ++ +  E    K F  AE+YHQ YL K
Sbjct:   30 GYANGRGETTKYELI--NQTGHAETVHVTYDAKQISLKEILLHYFRIINPTSKNKQGNDVGTQYRTGVYYTDDKDLEVINQVFDEVAKKYDQPLAVEKENLKNFVVAEDYHQDYLKK 144          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA2_RHIME (Peptide methionine sulfoxide reductase msrA 2 OS=Rhizobium meliloti GN=msrA2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.825e-13
Identity = 43/114 (37.72%), Postives = 60/114 (52.63%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQY 345
            GY+ G   NP+YED   G   H EVVRV++DP   S+  L+ + +   DPT  + Q  D G  Y + I+     Q   AK    + +  L R IVT +  A KF+ AE+YHQ +
Sbjct:   52 GYAGGKSANPTYEDYAKG--GHREVVRVKFDPDRVSYAELVGVLFRTTDPTDGDGQFCDRGFAYTTAIHALNERQAMDAKAEKIKAEAELGRPIVTPVEGAAKFWPAEDYHQDF 163          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_MYCPU (Peptide methionine sulfoxide reductase msrA OS=Mycoplasma pulmonis GN=msrA PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 8.220e-13
Identity = 43/116 (37.07%), Postives = 60/116 (51.72%), Query Frame = 1
Query:    7 YSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            Y  G      Y++VC G++ H E VRV YD  + + + L  ++    +P +LN+QGND G QYR G+Y Y  +  K   +  E   K   +K   EI   +    AEEYHQ YL K
Sbjct:   32 YINGGFEGVKYKEVCEGSS-HVEAVRVIYDNSKITEEDLWKLYLRIINPYSLNKQGNDRGVQYRIGLYSYDKDLLKKFSDLNEAFMKSEGKKNYIEIQKVEDVTLAEEYHQNYLLK 146          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_DROME (Peptide methionine sulfoxide reductase OS=Drosophila melanogaster GN=Eip71CD PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.831e-12
Identity = 46/123 (37.40%), Postives = 64/123 (52.03%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHD---PTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKES-LERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKG 357
            VGY+ G    P+Y  +     +H EV+ + YDP   SF  LLD+FW  H+    T + R       QY S I ++  EQ++ A  S LE Q++     I TEI   + FY AE YHQ+Y  +G
Sbjct:   67 VGYAGGSSDLPTYRKM----GDHTEVLEIDYDPTVISFKELLDLFWNNHEYGLTTPIKR-------QYASLILYHDEEQKQVAHASKLEEQERRAPEIITTEIASKENFYPAEAYHQKYRLQG 178          
The following BLAST results are available for this feature:
BLAST of CX294748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSAB2_STRR62.555e-1435.90Peptide methionine sulfoxide reductase msrA/msrB 2... [more]
MSAB2_STRPN2.555e-1435.90Peptide methionine sulfoxide reductase msrA/msrB 2... [more]
MSRA2_RHIME2.825e-1337.72Peptide methionine sulfoxide reductase msrA 2 OS=R... [more]
MSRA_MYCPU8.220e-1337.07Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_DROME1.831e-1237.40Peptide methionine sulfoxide reductase OS=Drosophi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05055E02SK FlavSen1 Citrus clementina cDNA clone C05055E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294748 ID=CX294748; Name=CX294748; organism=Citrus clementina; type=EST; length=584bp
GTTGGGTACAGCCAAGGCTACTTGCATAACCCTAGCTACGAGGACGTGTG
CAGTGGGACTACCAATCATAATGAAGTTGTTAGGGTTCAGTATGATCCTA
AGGAGTGTAGTTTCGATACTTTGCTTGATATGTTTTGGGCTCGCCATGAT
CCTACCACGCTTAATCGGCAGGGTAATGATGTTGGAACACAGTACAGATC
TGGAATTTATTTTTACACTCCTGAGCAAGAGAAGGCAGCCAAGGAGTCCT
TGGAGAGACAGCAGAAGGTCTTGAACAGGAAAATTGTCACCGAAATCCTA
CCTGCCAAGAAGTTCTACCGAGCTGAGGAATACCACCAGCAGTATCTTGC
AAAAGGGGGTCGATTTGGATTCAAACAATCTACTGAGAAAGGCTGCAATG
ATCCTATCAGGTGCTATGGCTAAATAGTACCCTGCTATTACAGTTAATTT
TCAGCTTTTTTCTGAATCTTAGCCATTATAACTTGCATTCTTGCTATGAT
AAGAATGCCAGATGTATTTAGTGTCTGAACTTGGGTATGTAACTAGTCAT
AGTCTCTTAAACCATCATCTATATCTGTAATTTC
back to top