CX294748

Overview
NameCX294748
Unique NameCX294748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8314 contig Ccv1_Contig8314:452..1035. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_YERPA (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=msrA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.265e-29
Identity = 66/122 (54.10%), Postives = 78/122 (63.93%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GYS G+  NP+Y +VCSG T H EVVRV +DP   S+  LL +FW  HDP    RQG DVGTQYRS IY  TPEQE+ A +S ER Q+ +      R I +EI  A  FY AE+ HQQYL K
Sbjct:   72 GYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_YERP3 (Peptide methionine sulfoxide reductase msrA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=msrA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.265e-29
Identity = 66/122 (54.10%), Postives = 78/122 (63.93%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GYS G+  NP+Y +VCSG T H EVVRV +DP   S+  LL +FW  HDP    RQG DVGTQYRS IY  TPEQE+ A +S ER Q+ +      R I +EI  A  FY AE+ HQQYL K
Sbjct:   72 GYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_VIBVU (Peptide methionine sulfoxide reductase msrA OS=Vibrio vulnificus GN=msrA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.265e-29
Identity = 64/122 (52.46%), Postives = 80/122 (65.57%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL----NRKIVTEILPAKKFYRAEEYHQQYLAK 354
            VGYS G+  NP+Y++VCSG T H EVVRV +DP+    + LL+ FW RHDPT   RQGND+GTQYRS IY ++ +Q   A  S +  Q  L    +  I TEI PA  ++ AE YHQQYLAK
Sbjct:   70 VGYSGGFTLNPTYQEVCSGQTGHTEVVRVIFDPQVLPLEQLLEKFWERHDPTQGMRQGNDLGTQYRSAIYTFSDQQLDIALASQQAYQAALANQQHNTITTEIRPAGPYFYAETYHQQYLAK 191          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_NAUPA (Peptide methionine sulfoxide reductase msrA OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=msrA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.265e-29
Identity = 66/119 (55.46%), Postives = 82/119 (68.91%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQ-EKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            VGY+ G   NP+YE VC+G T H EVV + YD    S+D LLD+F+  HDPT LNRQGNDVGTQYRS I +   EQ EKA K+  E +++ LN  +VTE+ P + FY AE+YHQ Y AK
Sbjct:   29 VGYAGGRRPNPNYEQVCTGVTGHAEVVEIDYDENTVSYDELLDIFFKIHDPTQLNRQGNDVGTQYRSIILYLDEEQKEKALKKIEELKKEGLN--VVTEVKPLEIFYPAEKYHQNYFAK 145          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_HUMAN (Peptide methionine sulfoxide reductase OS=Homo sapiens GN=MSRA PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.265e-29
Identity = 65/122 (53.28%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 354
            VG++ GY  NP+Y++VCS  T H EVVRV Y P+  SF+ LL +FW  HDPT   RQGND GTQYRS IY  + +Q +AA  S E  QKVL+      I T+I   + FY AE+YHQQYL+K
Sbjct:   93 VGFAGGYTSNPTYKEVCSEKTGHAEVVRVVYQPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAALSSKENYQKVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSK 214          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_CLOBL (Peptide methionine sulfoxide reductase msrA OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=msrA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.265e-29
Identity = 60/118 (50.85%), Postives = 78/118 (66.10%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            VGY+ G   NPSYE+VCSGTT H E   ++YD    S + LL+ FW+  DPT LN+QGND GTQYR+GI++   +      +S  ++QK   + IVTE+ P K FY AEEYHQ+YL K
Sbjct:   29 VGYANGIKENPSYEEVCSGTTGHAEACYIKYDESIISLEELLNKFWSIIDPTVLNKQGNDRGTQYRTGIFYLDEKDLNVIIKSKSQEQKNYRKPIVTEVEPLKCFYEAEEYHQKYLKK 146          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_CLOBK (Peptide methionine sulfoxide reductase msrA OS=Clostridium botulinum (strain Okra / Type B1) GN=msrA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.265e-29
Identity = 60/118 (50.85%), Postives = 78/118 (66.10%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            VGY+ G   NPSYE+VCSGTT H E   ++YD    S + LL+ FW+  DPT LN+QGND GTQYR+GI++   +      +S  ++QK   + IVTE+ P K FY AEEYHQ+YL K
Sbjct:   29 VGYANGIKENPSYEEVCSGTTGHAEACYIKYDESIISLEELLNKFWSIIDPTVLNKQGNDRGTQYRTGIFYLDQKDLNVIIKSKSQEQKNYRKPIVTEVEPLKCFYEAEEYHQKYLKK 146          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_SULAC (Peptide methionine sulfoxide reductase msrA OS=Sulfolobus acidocaldarius GN=msrA PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 8.182e-29
Identity = 56/117 (47.86%), Postives = 85/117 (72.65%), Query Frame = 1
Query:    4 GYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 354
            GYS G + NP+YE+VC+  T H EVV++ +DP   ++  LL++F+  HDPTT NRQGNDVG+QYRS I +++ EQ+K A+E ++  ++ L +K+VTE++P + FY AE+YH  +  K
Sbjct:   30 GYSGGKVPNPTYEEVCTDETGHAEVVQITFDPSVITYRELLEIFFEIHDPTTPNRQGNDVGSQYRSIILYHSEEQKKIAEEMIKLYERKLGKKVVTELVPFEAFYEAEDYHHDFYDK 146          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_RAT (Peptide methionine sulfoxide reductase OS=Rattus norvegicus GN=Msra PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.182e-29
Identity = 64/122 (52.46%), Postives = 82/122 (67.21%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 354
            VG++ GY  NP+Y++VCS  T H EVVRV Y P+  SF+ LL +FW  HDPT   RQGND GTQYRS +Y  +  Q +AA +S E  QKVL++     I T+I   + FY AE+YHQQYL+K
Sbjct:   91 VGFAGGYTRNPTYKEVCSEKTGHAEVVRVVYRPEHVSFEELLKVFWENHDPTQGMRQGNDCGTQYRSAVYPTSAVQMEAALKSKEEYQKVLSKHGFGPITTDIREGQVFYYAEDYHQQYLSK 212          
BLAST of CX294748 vs. ExPASy Swiss-Prot
Match: MSRA_PSEMY (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas mendocina (strain ymp) GN=msrA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.182e-29
Identity = 70/129 (54.26%), Postives = 82/129 (63.57%), Query Frame = 1
Query:    1 VGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK--GGRFG 369
            VGY+ G+  NP+YE+VCSG T H EVV V +DP++ SFD LL +FW  H+PT   RQGND GTQYRS IY     Q +AA  S  R Q  L++     I TEI  A  FY AE YHQQYLAK  GG  G
Sbjct:   77 VGYAGGFTPNPTYEEVCSGLTGHTEVVLVVFDPQQTSFDALLKVFWEAHNPTQGMRQGNDQGTQYRSAIYCQDHAQLEAALASQARFQAELDKAGLGSITTEICEAPIFYYAETYHQQYLAKNPGGYCG 205          
The following BLAST results are available for this feature:
BLAST of CX294748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_YERPA6.265e-2954.10Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERP36.265e-2954.10Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_VIBVU6.265e-2952.46Peptide methionine sulfoxide reductase msrA OS=Vib... [more]
MSRA_NAUPA6.265e-2955.46Peptide methionine sulfoxide reductase msrA OS=Nau... [more]
MSRA_HUMAN6.265e-2953.28Peptide methionine sulfoxide reductase OS=Homo sap... [more]
MSRA_CLOBL6.265e-2950.85Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_CLOBK6.265e-2950.85Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_SULAC8.182e-2947.86Peptide methionine sulfoxide reductase msrA OS=Sul... [more]
MSRA_RAT8.182e-2952.46Peptide methionine sulfoxide reductase OS=Rattus n... [more]
MSRA_PSEMY8.182e-2954.26Peptide methionine sulfoxide reductase msrA OS=Pse... [more]

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Properties
Property NameValue
Genbank descriptionC05055E02SK FlavSen1 Citrus clementina cDNA clone C05055E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294748 ID=CX294748; Name=CX294748; organism=Citrus clementina; type=EST; length=584bp
GTTGGGTACAGCCAAGGCTACTTGCATAACCCTAGCTACGAGGACGTGTG
CAGTGGGACTACCAATCATAATGAAGTTGTTAGGGTTCAGTATGATCCTA
AGGAGTGTAGTTTCGATACTTTGCTTGATATGTTTTGGGCTCGCCATGAT
CCTACCACGCTTAATCGGCAGGGTAATGATGTTGGAACACAGTACAGATC
TGGAATTTATTTTTACACTCCTGAGCAAGAGAAGGCAGCCAAGGAGTCCT
TGGAGAGACAGCAGAAGGTCTTGAACAGGAAAATTGTCACCGAAATCCTA
CCTGCCAAGAAGTTCTACCGAGCTGAGGAATACCACCAGCAGTATCTTGC
AAAAGGGGGTCGATTTGGATTCAAACAATCTACTGAGAAAGGCTGCAATG
ATCCTATCAGGTGCTATGGCTAAATAGTACCCTGCTATTACAGTTAATTT
TCAGCTTTTTTCTGAATCTTAGCCATTATAACTTGCATTCTTGCTATGAT
AAGAATGCCAGATGTATTTAGTGTCTGAACTTGGGTATGTAACTAGTCAT
AGTCTCTTAAACCATCATCTATATCTGTAATTTC
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