CX294756

Overview
NameCX294756
Unique NameCX294756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294756 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.072e-25
Identity = 64/160 (40.00%), Postives = 85/160 (53.12%), Query Frame = 1
Query:  178 IAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALD 657
            + +GH  EA+ PD  R  L E + T +FVF G G+ M  +  T  G+                         +ISGGHVNPAVT    VGG+++L R  LY  AQ+L S+ AC LL+++T G  T   AL+ GVG    VV E V TF L++ +YAT LD
Sbjct:    4 LTLGHRGEASEPDFFRGVLGELVLTFLFVFIGVGAAMT-DGATTKGSTAGGDLTAVALGQALVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLTGGLATPVHALAEGVGPLQGVVAEAVFTFSLLFVIYATILD 162          
BLAST of CX294756 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 7.685e-24
Identity = 64/166 (38.55%), Postives = 85/166 (51.20%), Query Frame = 1
Query:  160 IMPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALD 657
            ++P+  + +GH  EA  P  LRA   E + T +FVF G  S +   K    GA   +                     ++SGGH+NPAVT    VGG+I+L R  LY  AQL GS++ACLLL+ +T G  T   AL+ GVG    V  E V TF L+  + AT LD
Sbjct:    3 LLPMTKLELGHRGEAWEPGCLRAVAGELLFTFLFVFIGVASTITAGKAA-GGAGEAAAVTAAAMAQALVVAVLATAGFHVSGGHLNPAVTLSLAVGGHITLFRSALYVAAQLAGSSLACLLLRCLTGGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILD 167          
BLAST of CX294756 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.193e-22
Identity = 58/154 (37.66%), Postives = 80/154 (51.95%), Query Frame = 1
Query:  199 EATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTP-SXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALD 657
            E      +RA LAE + T +FVF G  + MA       GA  P +                     ++SGGH+NPAVT      G+I+  R  LY  AQLL S++AC+LL+++T G  T    L SG+G    +V EI++TF L++ VYAT LD
Sbjct:   12 EVVDAGCVRAVLAELVLTFVFVFTGVAATMAAGVPEVAGAAMPMAALAGVAIATALAAGVLVTAGFHVSGGHLNPAVTVALLARGHITAFRSALYVAAQLLASSLACILLRYLTGGMATPVHTLGSGIGPMQGLVMEIILTFSLLFVVYATILD 165          
BLAST of CX294756 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 2.093e-21
Identity = 55/144 (38.19%), Postives = 80/144 (55.56%), Query Frame = 1
Query:  211 PDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVY 642
            P ALRA  AEF ST +FVF   GS ++   LT +  +  S                     ++SGGHVNPAVTF   +GG+I++   I YW +Q+LGST ACL+L +++ GQ      ++  +  + A + E V+TF +VYTV+
Sbjct:   14 PPALRAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDASSLMATAVAQAFGLFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGSTFACLVLHYISAGQAVPTTRIAVEMTGFGAGILEGVLTFMVVYTVH 157          
BLAST of CX294756 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.733e-21
Identity = 58/156 (37.18%), Postives = 84/156 (53.85%), Query Frame = 1
Query:  199 EATHPDA--LRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTP-SXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALD 657
            EA  PD   +RA LAE + T +FVF G  + MA       G   P +                     ++SGGH+NPAVT G  V G+I+ LR +LY  AQLL S++AC+LL++++ G  T   AL +G+     +V E+++TF L++  YA  LD
Sbjct:   16 EAPAPDVGCVRAVLAELVLTFLFVFTGVSASMAAGAGGKPGEAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGILVRGHITKLRALLYVAAQLLASSLACILLRYLSGGMVTPVHALGAGIRPMQGLVMEVILTFSLLFVTYAMILD 171          
BLAST of CX294756 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.953e-21
Identity = 55/147 (37.41%), Postives = 78/147 (53.06%), Query Frame = 1
Query:  220 LRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTP-SXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALD 657
            +RA LAE + T +FVF G  + MA       G   P +                     ++SGGH+NPAVT G  V G+I+ LR +LY  AQLL S+ AC+LL+F++ G  T   AL  G+     +V E+++TF L++  YA  LD
Sbjct:   23 VRAVLAELVLTFLFVFTGVSAAMAAGSDGKPGDAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGLMVRGHITKLRAVLYVAAQLLASSAACVLLRFLSGGMVTPVHALGRGISPMQGLVMEVILTFSLLFVTYAMILD 169          
BLAST of CX294756 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.699e-19
Identity = 53/146 (36.30%), Postives = 74/146 (50.68%), Query Frame = 1
Query:  214 DALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATA 651
            +ALR  ++EFIST  FV A  GS M+  KL     + P                      N+SGGHVNPAVTF   V G IS+   + YW +Q++ S +ACL+LK     Q    + ++  +  + A V E V+ F LVYTV+  +
Sbjct:   20 NALRCYVSEFISTFFFVLAAVGSVMSSRKLMAGDVSGPFGVLIPAIANALALSSSVYISWNVSGGHVNPAVTFAMAVAGRISVPTAMFYWTSQMIASVMACLVLKVTVMEQHVPIYKIAGEMTGFGASVLEGVLAFVLVYTVFTAS 165          
BLAST of CX294756 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.301e-18
Identity = 57/161 (35.40%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  163 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTH-NGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVY 642
            M   N+ V   R  + P +LR+ LAEFIST +FVF   GS ++   LT  +  ++                       ++SGGHVNPAVTF   +GG I +   + YW +QLLG+T ACL L   + G+      ++  +  +   V E V+TF LVYTV+
Sbjct:    1 MASNNLLVDLKRCFSAP-SLRSYLAEFISTFLFVFTAVGSAISARMLTTPDVTSSAGPLVATAVAQAFGLFAAVLIAADVSGGHVNPAVTFAYAIGGRIGVPSAMFYWASQLLGATFACLSLNLFSAGEEVPTTRIAVAMTGFGGAVLEGVLTFLLVYTVH 160          
BLAST of CX294756 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.230e-13
Identity = 49/148 (33.11%), Postives = 73/148 (49.32%), Query Frame = 1
Query:  223 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTP----SXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAF---ALSSGVGAWNAVVFEIVMTFGLVYTVYA 645
            RA +AEF++ ++FVF   G+ + FN      AN                            ++SG H+NPAVT G  +   IS+L+ ++Y IAQ LG+ VA  +L  +T+G   ++     LS GV A   +  EI++TF LV  V A
Sbjct:   12 RAVIAEFLAMILFVFISIGAALGFNFPIEEKANQTVGRSQDIVKVSLAFGISIATMAQSVGHVSGAHLNPAVTLGCLLSCQISILKAVMYIIAQCLGAVVATAILSGITSGLENNSLGLNGLSPGVSAGQGLGVEILVTFQLVLCVVA 159          
BLAST of CX294756 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.578e-13
Identity = 56/168 (33.33%), Postives = 76/168 (45.24%), Query Frame = 1
Query:  166 PIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTH----NGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT----NGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYA 645
            P++   V   RE       RA +AEFI+TL+F++    + + F   T      GA                          ISGGH+NPAVTFG F+   +SL+R + Y +AQ LG+T    L+K       N     A  LS G      V  EI+ TF LVYTV++
Sbjct:   22 PVKTFEV---RELKKWSFYRAVIAEFIATLLFLYVTVLTVIGFKSQTDINAGGGACASVGLLGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVSYMVAQCLGATCGVGLVKVFQSTYYNRYGGGANMLSDGYNVGVGVGAEIIGTFVLVYTVFS 186          
The following BLAST results are available for this feature:
BLAST of CX294756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
TIP43_MAIZE1.072e-2540.00Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP42_ORYSJ7.685e-2438.55Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
TIP41_ORYSJ7.193e-2237.66Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
TIP51_ORYSJ2.093e-2138.19Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
TIP42_MAIZE2.733e-2137.18Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP41_MAIZE7.953e-2137.41Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
TIP51_ARATH5.699e-1936.30Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
TIP51_MAIZE6.301e-1835.40Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
AQPA_RANES1.230e-1333.11Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
PIP26_ARATH3.578e-1333.33Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC05055E10SK FlavSen1 Citrus clementina cDNA clone C05055E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294756 ID=CX294756; Name=CX294756; organism=Citrus clementina; type=EST; length=658bp
AAATTTATTGTACAACCGGAAACCGGCTTTAACCGCCTCCCAAAAACTAC
GCATTTCGAATATAAGTAGAAGCTCCTAGTTGAGAAGTGGAGACCAGTAC
ACTTACGTGAACCAGTAGTAATCACACCCCAAAGGTTCAATCTTCATCGT
TTGATCTCCATCATGCCGATCAGAAACATTGCCGTTGGCCATCCCCGTGA
GGCGACTCATCCAGATGCCCTAAGGGCAGCCCTAGCAGAGTTCATCTCAA
CTCTAATATTTGTCTTTGCCGGTGAAGGCTCGGGCATGGCCTTCAACAAG
CTCACTCACAACGGCGCCAACACCCCCTCCGGCCTCGTCGCCGCCTCTGT
TGCTCACGCTTTCGCCCTTTTCGTTGCTGTCGCCGTTGGCGCCAACATTT
CCGGTGGCCACGTTAATCCTGCTGTCACCTTTGGCGCCTTCGTTGGAGGT
AACATCTCCCTTCTACGAGGCATCCTCTACTGGATCGCCCAGCTTCTTGG
ATCCACCGTCGCATGCTTGCTTCTTAAGTTCGTTACCAACGGCCAGACCA
CATCTGCTTTTGCTCTCTCATCTGGAGTTGGTGCATGGAACGCAGTCGTT
TTCGAGATCGTGATGACATTCGGACTAGTGTACACAGTGTATGCCACAGC
CCTGGACC
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