CX294765

Overview
NameCX294765
Unique NameCX294765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length393
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294765 vs. ExPASy Swiss-Prot
Match: METB_ECOLI (Cystathionine gamma-synthase OS=Escherichia coli (strain K12) GN=metB PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.647e-16
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 2
Query:    5 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 337
            VK++++P L  +  H IA +Q  GFG ++SFE+DGD     +F+  L +  +A S GG ES++   A M++  ++   R   GI + L+R S G+ED EDL AD+     A
Sbjct:  272 VKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRA 382          
BLAST of CX294765 vs. ExPASy Swiss-Prot
Match: METB_MYCLE (Cystathionine gamma-synthase OS=Mycobacterium leprae GN=metB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.700e-16
Identity = 45/110 (40.91%), Postives = 64/110 (58.18%), Query Frame = 2
Query:    5 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 334
            V  V YPGL SHP H +A +QM GFGG+VS  +     A        K+  +A S GG ES+++QP+ M++   + S+     + D+LVR S G+ED  DL  D+ QAL+
Sbjct:  282 VSAVLYPGLPSHPGHEVAARQMRGFGGMVSLRMRAGRLAAQDLCARTKVFTLAESLGGVESLIEQPSAMTHASTTGSQ---LEVPDDLVRLSVGIEDVGDLLCDLKQALN 388          
BLAST of CX294765 vs. ExPASy Swiss-Prot
Match: METB_MYCTU (Cystathionine gamma-synthase OS=Mycobacterium tuberculosis GN=metB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.991e-15
Identity = 44/109 (40.37%), Postives = 62/109 (56.88%), Query Frame = 2
Query:    5 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 331
            V  V YPGL SHP H IA +QM GFGG+VS  +     A        ++  +A S GG ES+++ P+ M++   + S+     + D+LVR S G+ED  DL  D+ QAL
Sbjct:  282 VSSVLYPGLPSHPGHEIAARQMRGFGGMVSVRMRAGRRAAQDLCAKTRVFILAESLGGVESLIEHPSAMTHASTAGSQ---LEVPDDLVRLSVGIEDIADLLGDLEQAL 387          
BLAST of CX294765 vs. ExPASy Swiss-Prot
Match: METB_MYCBO (Cystathionine gamma-synthase OS=Mycobacterium bovis GN=metB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.991e-15
Identity = 44/109 (40.37%), Postives = 62/109 (56.88%), Query Frame = 2
Query:    5 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 331
            V  V YPGL SHP H IA +QM GFGG+VS  +     A        ++  +A S GG ES+++ P+ M++   + S+     + D+LVR S G+ED  DL  D+ QAL
Sbjct:  282 VSSVLYPGLPSHPGHEIAARQMRGFGGMVSVRMRAGRRAAQDLCAKTRVFILAESLGGVESLIEHPSAMTHASTAGSQ---LEVPDDLVRLSVGIEDIADLLGDLEQAL 387          
BLAST of CX294765 vs. ExPASy Swiss-Prot
Match: METC_ARATH (Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.518e-14
Identity = 39/106 (36.79%), Postives = 60/106 (56.60%), Query Frame = 2
Query:    2 KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV 319
            +VK+V+Y GL  HP HH+   Q  G G V SF + G +  +   ++  K   IA SFG  +S++  P  MS+  +    R   G+ ++LVR S G+ED +DL +D+
Sbjct:  351 RVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSF-ITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDL 455          
BLAST of CX294765 vs. ExPASy Swiss-Prot
Match: CYSD_SCHPO (O-acetylhomoserine (thiol)-lyase OS=Schizosaccharomyces pombe GN=SPBC428.11 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.969e-13
Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = 2
Query:    2 KVKRVHYPGLKSHPEHHIATQQM-TGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 331
            KV  V YPGL+SH  H +A + +  G+G V+SF   G    + K ++ALK+     + G  +++V  PA  ++  L+  E++  G+  +L+R + G+E  +D+ AD  QAL
Sbjct:  316 KVNWVSYPGLESHVSHKLAKKYLKNGYGAVLSFGAKGGPDQSRKVVNALKLASQLANVGDAKTLVIAPAYTTHLQLTDEEQISAGVTKDLIRVAVGIEHIDDIIADFAQAL 426          
BLAST of CX294765 vs. ExPASy Swiss-Prot
Match: METB_HAEIN (Cystathionine gamma-synthase OS=Haemophilus influenzae GN=metB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.775e-12
Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = 2
Query:   80 GGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQA 328
            GG++SF +  +      F+ ++K+   A S GG ES +  PA  ++ D+ +SER+  GI + L+RFS G+ED ED+KAD+LQA
Sbjct:  283 GGMLSFRLQDEAWVNT-FLKSIKLITFAESLGGTESFITYPATQTHMDIPESERVARGITNTLLRFSVGIEDVEDIKADLLQA 364          
The following BLAST results are available for this feature:
BLAST of CX294765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
METB_ECOLI2.647e-1637.84Cystathionine gamma-synthase OS=Escherichia coli (... [more]
METB_MYCLE7.700e-1640.91Cystathionine gamma-synthase OS=Mycobacterium lepr... [more]
METB_MYCTU4.991e-1540.37Cystathionine gamma-synthase OS=Mycobacterium tube... [more]
METB_MYCBO4.991e-1540.37Cystathionine gamma-synthase OS=Mycobacterium bovi... [more]
METC_ARATH5.518e-1436.79Cystathionine beta-lyase, chloroplastic OS=Arabido... [more]
CYSD_SCHPO7.969e-1334.23O-acetylhomoserine (thiol)-lyase OS=Schizosaccharo... [more]
METB_HAEIN1.775e-1242.17Cystathionine gamma-synthase OS=Haemophilus influe... [more]

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Properties
Property NameValue
Genbank descriptionC05055F10SK FlavSen1 Citrus clementina cDNA clone C05055F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294765 ID=CX294765; Name=CX294765; organism=Citrus clementina; type=EST; length=393bp
AAAGGTGAAGCGCGTTCACTATCCAGGCTTGAAGAGTCATCCTGAGCATC
ACATTGCCACACAGCAAATGACTGGTTTTGGTGGGGTAGTTAGTTTTGAG
GTGGATGGAGACCTAACGGCCACCATAAAATTTATTGATGCCTTGAAAAT
CCCATATATTGCTCCATCCTTCGGTGGCTGTGAGAGCATTGTTGATCAGC
CAGCTATAATGTCGTATTGGGACCTTAGCCAATCGGAGAGGCTCAAGTAT
GGGATTATGGATAACTTGGTTCGCTTTAGCTTTGGAGTGGAAGATTTTGA
AGATTTGAAGGCAGATGTACTTCAGGCCCTGCATGCCATATAGAAGTGTT
TTTTGTGTTTCACCTTCGCATAATTTTCATTTTACTTTTCCTA
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