CX294767
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.097e-36 Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 2 Query: 317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELK + Sbjct: 36 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAA 82 HSP 2 Score: 83.5741 bits (205), Expect = 1.097e-36 Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 3 Query: 102 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 MKHNNVIPNGHFKKHWQNYVKTWFNQPARK RRRV R Sbjct: 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVAR 37
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.429e-36 Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = 2 Query: 317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELK 451 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELK Sbjct: 36 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELK 80 HSP 2 Score: 83.5741 bits (205), Expect = 1.429e-36 Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 3 Query: 102 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 MKHNNVIPNGHFKKHWQNYVKTWFNQPARK RRRV R Sbjct: 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVAR 37
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 3.158e-36 Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 2 Query: 317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457 ARQKKAVKIFPRPT+GPLRPVVHGQTLKYNMK+R G+GFTLEELK + Sbjct: 36 ARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAA 82 HSP 2 Score: 83.1889 bits (204), Expect = 3.158e-36 Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 3 Query: 102 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 MKHNNVIPNGHFKKHWQNYVKTWFNQPARK RRR+ R Sbjct: 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIAR 37
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.185e-35 Identity = 43/47 (91.49%), Postives = 47/47 (100.00%), Query Frame = 2 Query: 317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457 ARQKKAVKIFPRPT+GPLRPVVHGQTLKYNMK+RAG+GFTLEELKV+ Sbjct: 36 ARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKVA 82 HSP 2 Score: 78.1814 bits (191), Expect = 1.185e-35 Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 3 Query: 102 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 MKHNNVIP+ HF+KHWQNYVKTWFNQPARK RRRV R Sbjct: 1 MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVAR 37
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 3.540e-31 Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 2 Query: 317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457 ARQ KAVKIFPRPTAGP+RPVVH QTL YNMK+RAG+GFTLEELK + Sbjct: 36 ARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAA 82 HSP 2 Score: 70.8626 bits (172), Expect = 3.540e-31 Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 3 Query: 102 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 MKHNNVIPNGHFKK W+NYVKT FNQPA K RRR+ R Sbjct: 1 MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIAR 37
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.859e-29 Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 2 Query: 317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457 ARQKKAVKI PRPTAG LRP+VHGQTLKYNMK+R+GRGF+LEELK + Sbjct: 32 ARQKKAVKISPRPTAGTLRPIVHGQTLKYNMKVRSGRGFSLEELKAA 78 HSP 2 Score: 65.855 bits (159), Expect = 1.859e-29 Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 3 Query: 126 NGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 NGHFKKHWQNYVKTWFNQPARK RRR+ R Sbjct: 5 NGHFKKHWQNYVKTWFNQPARKTRRRIAR 33
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_DICDI (60S ribosomal protein L13 OS=Dictyostelium discoideum GN=rpl13 PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.912e-21 Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 2 Query: 320 RQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457 R +KA K+FPRP A L+PVV G T++YNMK+RAGRGFTLEELK + Sbjct: 38 RIEKAAKVFPRPIA-TLKPVVRGSTIRYNMKVRAGRGFTLEELKAA 82 HSP 2 Score: 58.151 bits (139), Expect = 1.912e-21 Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 3 Query: 108 HNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 HN V+ N HF+KHWQ V+TWFNQPARK RRR R Sbjct: 4 HNKVLSNDHFRKHWQMRVRTWFNQPARKIRRRNNR 38
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_SPOFR (60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 2.484e-21 Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 3 Query: 105 KHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 K NN+IPNGHF K WQ +VKTWFNQPAR++RR+ R Sbjct: 3 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNR 38 HSP 2 Score: 59.6918 bits (143), Expect = 2.484e-21 Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 2 Query: 320 RQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457 R KKA + PRP AGPLRPVV T++Y+ K+RAGRGFTL E++ + Sbjct: 38 RIKKAKAVAPRPAAGPLRPVVRCPTIRYHTKVRAGRGFTLREIRAA 83
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 3.237e-21 Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 2 Query: 317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELK 451 AR +KA FPRP AG L+P+V QT+KYN K R GRGFTLEELK Sbjct: 37 ARAEKAKATFPRPVAGSLKPIVRCQTVKYNTKQRLGRGFTLEELK 81 HSP 2 Score: 59.3066 bits (142), Expect = 3.237e-21 Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 3 Query: 102 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 ++ N+++PNGHF K WQ +VKTWFNQPARK RRR R Sbjct: 2 VRGNDMLPNGHFHKKWQFHVKTWFNQPARKQRRRNAR 38
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_DROME (60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=1 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 7.114e-21 Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 2 Query: 320 RQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELK 451 R KKA +FPRP +G LRPVV T++Y+ KLRAGRGFTLEELK Sbjct: 38 RVKKAKAVFPRPASGALRPVVRCPTIRYHTKLRAGRGFTLEELK 81 HSP 2 Score: 57.3806 bits (137), Expect = 7.114e-21 Identity = 24/36 (66.67%), Postives = 27/36 (75.00%), Query Frame = 3 Query: 105 KHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 K NN+IPN H+ K WQ +VKTWFNQPARK RR R Sbjct: 3 KGNNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANR 38 The following BLAST results are available for this feature:
BLAST of CX294767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX294767 ID=CX294767; Name=CX294767; organism=Citrus clementina; type=EST; length=619bpback to top |