CX294767 | Citrus Genome Database

Overview


Name	CX294767
Unique Name	CX294767
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	619

Libraries


Library Name	Type
FlavSen1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CX294767_ssr289	microsatellite	CX294767_ssr289:289..300.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.489e-20
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 2

Query:  317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457
            ARQ KA +I PRP AGPLRP+V   T++YN K+RAGRGFTLEELK +
Sbjct:   38 ARQAKARRIAPRPVAGPLRPIVRCPTVRYNTKVRAGRGFTLEELKAA 84

HSP 2 Score: 50.0618 bits (118), Expect = 4.489e-20
Identity = 22/34 (64.71%), Postives = 24/34 (70.59%), Query Frame = 3

Query:  111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            N +I N HF K WQ  V+TWFNQPARK RRR  R
Sbjct:    6 NGMILNPHFHKDWQKRVRTWFNQPARKLRRRKAR 39

[Close]

BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 2.174e-19
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 2

Query:  317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457
            ARQ KA +I PRP +GPLRPVV   T++Y+ K+RAGRGFTLEELK +
Sbjct:   38 ARQAKARRIAPRPVSGPLRPVVRCPTIRYHTKVRAGRGFTLEELKAA 84

HSP 2 Score: 50.0618 bits (118), Expect = 2.174e-19
Identity = 22/34 (64.71%), Postives = 24/34 (70.59%), Query Frame = 3

Query:  111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            N +I N HF K WQ  V+TWFNQPARK RRR  R
Sbjct:    6 NGMILNPHFHKDWQKRVRTWFNQPARKIRRRKAR 39

[Close]

BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_SCHMA (60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 4.806e-19
Identity = 26/47 (55.32%), Postives = 39/47 (82.98%), Query Frame = 2

Query:  317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457
            AR+ KA +I PRP +GPLRP+V+  T +YNMK+R+GRGF+L+E++ +
Sbjct:   37 ARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRSGRGFSLQEVRAA 83

HSP 2 Score: 52.7582 bits (125), Expect = 4.806e-19
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 3

Query:  111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            N+V+ + HF+K WQ  VKTWFNQPARK RRR  R
Sbjct:    5 NDVLHHNHFRKKWQFMVKTWFNQPARKERRRQAR 38

[Close]

BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_SCHPO (60S ribosomal protein L13 OS=Schizosaccharomyces pombe GN=rpl13 PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 8.091e-19
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 2

Query:  317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457
            ARQ KA KI PRP    +RP V   T++YNMK+RAGRGFTLEELK +
Sbjct:   38 ARQTKAAKIAPRPVEA-IRPAVKPPTIRYNMKVRAGRGFTLEELKAA 83

HSP 2 Score: 54.299 bits (129), Expect = 8.091e-19
Identity = 22/31 (70.97%), Postives = 23/31 (74.19%), Query Frame = 3

Query:  120 IPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            +PN HF K WQ YVKTWFNQP RK RRR  R
Sbjct:    9 LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR 39

[Close]

BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 6.613e-18
Identity = 29/47 (61.70%), Postives = 39/47 (82.98%), Query Frame = 2

Query:  317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457
            ARQ KA +I PRP AGP+RP+V   T++Y+ K+RAGRGF+LEELK++
Sbjct:   38 ARQAKARRIAPRPVAGPIRPIVRCPTVRYHKKVRAGRGFSLEELKLA 84

HSP 2 Score: 46.595 bits (109), Expect = 6.613e-18
Identity = 21/34 (61.76%), Postives = 22/34 (64.71%), Query Frame = 3

Query:  111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            N +I   HF K WQ  V TWFNQPARK RRR  R
Sbjct:    6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKAR 39

[Close]

BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_BOVIN (60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 64.3142 bits (155), Expect = 6.613e-18
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 2

Query:  317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457
            ARQ KA +I PRP +GPLRPVV   T++Y+ K+RAGRGF+LEEL+V+
Sbjct:   38 ARQAKARRIAPRPASGPLRPVVRCPTVRYHTKVRAGRGFSLEELRVA 84

HSP 2 Score: 46.595 bits (109), Expect = 6.613e-18
Identity = 21/34 (61.76%), Postives = 22/34 (64.71%), Query Frame = 3

Query:  111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            N +I   HF K WQ  V TWFNQPARK RRR  R
Sbjct:    6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKAR 39

[Close]

BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_RAT (60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 1.454e-17
Identity = 28/47 (59.57%), Postives = 39/47 (82.98%), Query Frame = 2

Query:  317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457
            ARQ KA +I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+V+
Sbjct:   38 ARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVA 84

HSP 2 Score: 46.595 bits (109), Expect = 1.454e-17
Identity = 21/34 (61.76%), Postives = 22/34 (64.71%), Query Frame = 3

Query:  111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            N +I   HF K WQ  V TWFNQPARK RRR  R
Sbjct:    6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKAR 39

[Close]

BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_MOUSE (60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 1.454e-17
Identity = 28/47 (59.57%), Postives = 39/47 (82.98%), Query Frame = 2

Query:  317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457
            ARQ KA +I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+V+
Sbjct:   38 ARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVA 84

HSP 2 Score: 46.595 bits (109), Expect = 1.454e-17
Identity = 21/34 (61.76%), Postives = 22/34 (64.71%), Query Frame = 3

Query:  111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            N +I   HF K WQ  V TWFNQPARK RRR  R
Sbjct:    6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKAR 39

[Close]

BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_CRIGR (60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 1.454e-17
Identity = 28/47 (59.57%), Postives = 39/47 (82.98%), Query Frame = 2

Query:  317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457
            ARQ KA +I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+V+
Sbjct:   38 ARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVA 84

HSP 2 Score: 46.595 bits (109), Expect = 1.454e-17
Identity = 21/34 (61.76%), Postives = 22/34 (64.71%), Query Frame = 3

Query:  111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            N +I   HF K WQ  V TWFNQPARK RRR  R
Sbjct:    6 NGMILKPHFHKDWQRRVDTWFNQPARKIRRRKAR 39

[Close]

BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_HUMAN (60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4)

HSP 1 Score: 63.1586 bits (152), Expect = 1.890e-17
Identity = 28/47 (59.57%), Postives = 39/47 (82.98%), Query Frame = 2

Query:  317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457
            ARQ KA +I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+V+
Sbjct:   38 ARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVA 84

HSP 2 Score: 46.2098 bits (108), Expect = 1.890e-17
Identity = 20/34 (58.82%), Postives = 22/34 (64.71%), Query Frame = 3

Query:  111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            N ++   HF K WQ  V TWFNQPARK RRR  R
Sbjct:    6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKAR 39

The following BLAST results are available for this feature:

BLAST of CX294767 vs. ExPASy Swiss-Prot

BLAST of CX294767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26


Match Name	E-value	Identity	Description
RL13_ICTPU	4.489e-20	68.09	60S ribosomal protein L13 OS=Ictalurus punctatus G...	[more]
RL13_DANRE	2.174e-19	65.96	60S ribosomal protein L13 OS=Danio rerio GN=rpl13 ...	[more]
RL13_SCHMA	4.806e-19	55.32	60S ribosomal protein L13 OS=Schistosoma mansoni G...	[more]
RL13_SCHPO	8.091e-19	63.83	60S ribosomal protein L13 OS=Schizosaccharomyces p...	[more]
RL13_CHICK	6.613e-18	61.70	60S ribosomal protein L13 OS=Gallus gallus GN=RPL1...	[more]
RL13_BOVIN	6.613e-18	63.83	60S ribosomal protein L13 OS=Bos taurus GN=RPL13 P...	[more]
RL13_RAT	1.454e-17	59.57	60S ribosomal protein L13 OS=Rattus norvegicus GN=...	[more]
RL13_MOUSE	1.454e-17	59.57	60S ribosomal protein L13 OS=Mus musculus GN=Rpl13...	[more]
RL13_CRIGR	1.454e-17	59.57	60S ribosomal protein L13 OS=Cricetulus griseus GN...	[more]
RL13_HUMAN	1.890e-17	59.57	60S ribosomal protein L13 OS=Homo sapiens GN=RPL13...	[more]

Pages

Properties


Property Name	Value
Genbank description	C05055F12SK FlavSen1 Citrus clementina cDNA clone C05055F12, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX294767 ID=CX294767; Name=CX294767; organism=Citrus clementina; type=EST; length=619bp
TTAATTAAAATTACATGTAATTATATGCCCATCAATCTTAAATCTTTTAT
ATTTGATAGTTAGTTCTGAATCTGGTTGTGAATGTGATTGTGCTCACAGA
AATGAAGCACAACAATGTAATTCCAAATGGGCACTTTAAGAAGCATTGGC
AGAACTATGTCAAGACTTGGTTTAACCAACCGGCTCGCAAAAATCGACGA
CGAGTTGGTCGGTATTCTTTTCTTTAATTAGCTTTATTTCACTTCTTGTT
CCTGTTGATATCGTTTTCATTTTGTTGGTGCTTATTAGTTGTTTGTTTGT
TTAAAAATCACTAACAGCTCGTCAAAAGAAGGCCGTTAAAATCTTCCCTC
GCCCTACTGCTGGTCCTCTTCGCCCCGTCGTTCATGGCCAGACTTTGAAA
TATAACATGAAATTAAGGGCTGGCAGAGGCTTTACTCTTGAGGAACTCAA
GGTTTCTTTCTTCTTTTTCTTTTAGTTTCATTTTCGATAATTGATTTGAT
TAATATATTGCTTATGCATTCACATTATGTTAATTATGATTCAGTTGATG
TTTCTTTGTTATTATTGCTTTAGTTAATCTTATTCTCTTTACCCTAAGGC
TGCTGGAATTCCCAAGAAC