CX294767
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3) HSP 1 Score: 68.1662 bits (165), Expect = 4.489e-20 Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 2 Query: 317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457 ARQ KA +I PRP AGPLRP+V T++YN K+RAGRGFTLEELK + Sbjct: 38 ARQAKARRIAPRPVAGPLRPIVRCPTVRYNTKVRAGRGFTLEELKAA 84 HSP 2 Score: 50.0618 bits (118), Expect = 4.489e-20 Identity = 22/34 (64.71%), Postives = 24/34 (70.59%), Query Frame = 3 Query: 111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 N +I N HF K WQ V+TWFNQPARK RRR R Sbjct: 6 NGMILNPHFHKDWQKRVRTWFNQPARKLRRRKAR 39
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3) HSP 1 Score: 65.855 bits (159), Expect = 2.174e-19 Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 2 Query: 317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457 ARQ KA +I PRP +GPLRPVV T++Y+ K+RAGRGFTLEELK + Sbjct: 38 ARQAKARRIAPRPVSGPLRPVVRCPTIRYHTKVRAGRGFTLEELKAA 84 HSP 2 Score: 50.0618 bits (118), Expect = 2.174e-19 Identity = 22/34 (64.71%), Postives = 24/34 (70.59%), Query Frame = 3 Query: 111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 N +I N HF K WQ V+TWFNQPARK RRR R Sbjct: 6 NGMILNPHFHKDWQKRVRTWFNQPARKIRRRKAR 39
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_SCHMA (60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 4.806e-19 Identity = 26/47 (55.32%), Postives = 39/47 (82.98%), Query Frame = 2 Query: 317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457 AR+ KA +I PRP +GPLRP+V+ T +YNMK+R+GRGF+L+E++ + Sbjct: 37 ARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRSGRGFSLQEVRAA 83 HSP 2 Score: 52.7582 bits (125), Expect = 4.806e-19 Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 3 Query: 111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 N+V+ + HF+K WQ VKTWFNQPARK RRR R Sbjct: 5 NDVLHHNHFRKKWQFMVKTWFNQPARKERRRQAR 38
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_SCHPO (60S ribosomal protein L13 OS=Schizosaccharomyces pombe GN=rpl13 PE=1 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 8.091e-19 Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 2 Query: 317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457 ARQ KA KI PRP +RP V T++YNMK+RAGRGFTLEELK + Sbjct: 38 ARQTKAAKIAPRPVEA-IRPAVKPPTIRYNMKVRAGRGFTLEELKAA 83 HSP 2 Score: 54.299 bits (129), Expect = 8.091e-19 Identity = 22/31 (70.97%), Postives = 23/31 (74.19%), Query Frame = 3 Query: 120 IPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 +PN HF K WQ YVKTWFNQP RK RRR R Sbjct: 9 LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR 39
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2) HSP 1 Score: 64.3142 bits (155), Expect = 6.613e-18 Identity = 29/47 (61.70%), Postives = 39/47 (82.98%), Query Frame = 2 Query: 317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457 ARQ KA +I PRP AGP+RP+V T++Y+ K+RAGRGF+LEELK++ Sbjct: 38 ARQAKARRIAPRPVAGPIRPIVRCPTVRYHKKVRAGRGFSLEELKLA 84 HSP 2 Score: 46.595 bits (109), Expect = 6.613e-18 Identity = 21/34 (61.76%), Postives = 22/34 (64.71%), Query Frame = 3 Query: 111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 N +I HF K WQ V TWFNQPARK RRR R Sbjct: 6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKAR 39
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_BOVIN (60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3) HSP 1 Score: 64.3142 bits (155), Expect = 6.613e-18 Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 2 Query: 317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457 ARQ KA +I PRP +GPLRPVV T++Y+ K+RAGRGF+LEEL+V+ Sbjct: 38 ARQAKARRIAPRPASGPLRPVVRCPTVRYHTKVRAGRGFSLEELRVA 84 HSP 2 Score: 46.595 bits (109), Expect = 6.613e-18 Identity = 21/34 (61.76%), Postives = 22/34 (64.71%), Query Frame = 3 Query: 111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 N +I HF K WQ V TWFNQPARK RRR R Sbjct: 6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKAR 39
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_RAT (60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2) HSP 1 Score: 63.1586 bits (152), Expect = 1.454e-17 Identity = 28/47 (59.57%), Postives = 39/47 (82.98%), Query Frame = 2 Query: 317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457 ARQ KA +I PRP +GP+RP+V T++Y+ K+RAGRGF+LEEL+V+ Sbjct: 38 ARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVA 84 HSP 2 Score: 46.595 bits (109), Expect = 1.454e-17 Identity = 21/34 (61.76%), Postives = 22/34 (64.71%), Query Frame = 3 Query: 111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 N +I HF K WQ V TWFNQPARK RRR R Sbjct: 6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKAR 39
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_MOUSE (60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3) HSP 1 Score: 63.1586 bits (152), Expect = 1.454e-17 Identity = 28/47 (59.57%), Postives = 39/47 (82.98%), Query Frame = 2 Query: 317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457 ARQ KA +I PRP +GP+RP+V T++Y+ K+RAGRGF+LEEL+V+ Sbjct: 38 ARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVA 84 HSP 2 Score: 46.595 bits (109), Expect = 1.454e-17 Identity = 21/34 (61.76%), Postives = 22/34 (64.71%), Query Frame = 3 Query: 111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 N +I HF K WQ V TWFNQPARK RRR R Sbjct: 6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKAR 39
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_CRIGR (60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3) HSP 1 Score: 63.1586 bits (152), Expect = 1.454e-17 Identity = 28/47 (59.57%), Postives = 39/47 (82.98%), Query Frame = 2 Query: 317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457 ARQ KA +I PRP +GP+RP+V T++Y+ K+RAGRGF+LEEL+V+ Sbjct: 38 ARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVA 84 HSP 2 Score: 46.595 bits (109), Expect = 1.454e-17 Identity = 21/34 (61.76%), Postives = 22/34 (64.71%), Query Frame = 3 Query: 111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 N +I HF K WQ V TWFNQPARK RRR R Sbjct: 6 NGMILKPHFHKDWQRRVDTWFNQPARKIRRRKAR 39
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_HUMAN (60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4) HSP 1 Score: 63.1586 bits (152), Expect = 1.890e-17 Identity = 28/47 (59.57%), Postives = 39/47 (82.98%), Query Frame = 2 Query: 317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457 ARQ KA +I PRP +GP+RP+V T++Y+ K+RAGRGF+LEEL+V+ Sbjct: 38 ARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVA 84 HSP 2 Score: 46.2098 bits (108), Expect = 1.890e-17 Identity = 20/34 (58.82%), Postives = 22/34 (64.71%), Query Frame = 3 Query: 111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 N ++ HF K WQ V TWFNQPARK RRR R Sbjct: 6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKAR 39 The following BLAST results are available for this feature:
BLAST of CX294767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294767 ID=CX294767; Name=CX294767; organism=Citrus clementina; type=EST; length=619bpback to top |