CX294767

Overview
NameCX294767
Unique NameCX294767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294767_ssr289 microsatellite CX294767_ssr289:289..300. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_CAEEL (60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 2.608e-16
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 2
Query:  320 RQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457
            RQ KAV+I PRP AG LR VV     +YN K R GRGF+L+ELK +
Sbjct:   39 RQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAA 84          

HSP 2 Score: 51.9878 bits (123), Expect = 2.608e-16
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 3
Query:  111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            N ++ N HF+KHW   +KTWF+QPARK RRR  R
Sbjct:    6 NQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNR 39          
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_CANAL (60S ribosomal protein L13 OS=Candida albicans GN=RPL13 PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 4.211e-12
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 2
Query:  317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELK 451
            +R +KA KI PRP    LRPVV   T+KYN K+RAGRGFTL ELK
Sbjct:   38 SRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKVRAGRGFTLAELK 81          

HSP 2 Score: 35.8094 bits (81), Expect = 4.211e-12
Identity = 14/29 (48.28%), Postives = 18/29 (62.07%), Query Frame = 3
Query:  126 NGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            N HF+KHWQ  V+  F+Q  +K  RR  R
Sbjct:   11 NNHFRKHWQERVRVHFDQAGKKASRRQSR 39          
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_LUMRU (60S ribosomal protein L13 OS=Lumbricus rubellus GN=RPL13 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 4.224e-12
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 2
Query:  317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457
            AR+KKA+ I PRP AG LRP V  QT KYN +LR GRGF+L+ELK +
Sbjct:   14 ARRKKALAIAPRPAAGSLRPQVRCQTFKYNTRLREGRGFSLDELKAA 60          

HSP 2 Score: 28.4906 bits (62), Expect = 4.224e-12
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  171 FNQPARKNRRRVGR 212
            FNQPARK RRRV R
Sbjct:    2 FNQPARKERRRVAR 15          
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_SACEX (60S ribosomal protein L13 OS=Saccharomyces exiguus GN=RPL13 PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 3.405e-11
Identity = 28/47 (59.57%), Postives = 32/47 (68.09%), Query Frame = 2
Query:  317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457
            AR  KA KI PRP    LRPVV   T+KYN K+RAGRGFT  E+K +
Sbjct:   38 ARVAKAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTFGEVKAA 83          

HSP 2 Score: 36.1946 bits (82), Expect = 3.405e-11
Identity = 15/27 (55.56%), Postives = 17/27 (62.96%), Query Frame = 3
Query:  132 HFKKHWQNYVKTWFNQPARKNRRRVGR 212
            HF+KHWQ  VK  FNQ  +K  RR  R
Sbjct:   13 HFRKHWQERVKVHFNQAGKKASRRDAR 39          
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13B_YEAST (60S ribosomal protein L13-B OS=Saccharomyces cerevisiae GN=RPL13B PE=1 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 4.421e-11
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 2
Query:  317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457
            AR  +A KI PRP    LRPVV   T+KYN K+RAGRGFTL E+K +
Sbjct:   38 ARAARAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAA 83          

HSP 2 Score: 34.6538 bits (78), Expect = 4.421e-11
Identity = 16/34 (47.06%), Postives = 19/34 (55.88%), Query Frame = 3
Query:  111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            N  I   HF+KHWQ  VK  F+Q  +K  RR  R
Sbjct:    6 NLPILKNHFRKHWQERVKVHFDQAGKKVSRRNAR 39          
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13A_YEAST (60S ribosomal protein L13-A OS=Saccharomyces cerevisiae GN=RPL13A PE=1 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 4.421e-11
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 2
Query:  317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457
            AR  +A KI PRP    LRPVV   T+KYN K+RAGRGFTL E+K +
Sbjct:   38 ARATRAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAA 83          

HSP 2 Score: 34.6538 bits (78), Expect = 4.421e-11
Identity = 16/34 (47.06%), Postives = 19/34 (55.88%), Query Frame = 3
Query:  111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212
            N  I   HF+KHWQ  VK  F+Q  +K  RR  R
Sbjct:    6 NLPILKNHFRKHWQERVKVHFDQAGKKVSRRNAR 39          
The following BLAST results are available for this feature:
BLAST of CX294767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_CAEEL2.608e-1658.7060S ribosomal protein L13 OS=Caenorhabditis elegan... [more]
RL13_CANAL4.211e-1264.4460S ribosomal protein L13 OS=Candida albicans GN=R... [more]
RL13_LUMRU4.224e-1263.8360S ribosomal protein L13 OS=Lumbricus rubellus GN... [more]
RL13_SACEX3.405e-1159.5760S ribosomal protein L13 OS=Saccharomyces exiguus... [more]
RL13B_YEAST4.421e-1159.5760S ribosomal protein L13-B OS=Saccharomyces cerev... [more]
RL13A_YEAST4.421e-1159.5760S ribosomal protein L13-A OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionC05055F12SK FlavSen1 Citrus clementina cDNA clone C05055F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294767 ID=CX294767; Name=CX294767; organism=Citrus clementina; type=EST; length=619bp
TTAATTAAAATTACATGTAATTATATGCCCATCAATCTTAAATCTTTTAT
ATTTGATAGTTAGTTCTGAATCTGGTTGTGAATGTGATTGTGCTCACAGA
AATGAAGCACAACAATGTAATTCCAAATGGGCACTTTAAGAAGCATTGGC
AGAACTATGTCAAGACTTGGTTTAACCAACCGGCTCGCAAAAATCGACGA
CGAGTTGGTCGGTATTCTTTTCTTTAATTAGCTTTATTTCACTTCTTGTT
CCTGTTGATATCGTTTTCATTTTGTTGGTGCTTATTAGTTGTTTGTTTGT
TTAAAAATCACTAACAGCTCGTCAAAAGAAGGCCGTTAAAATCTTCCCTC
GCCCTACTGCTGGTCCTCTTCGCCCCGTCGTTCATGGCCAGACTTTGAAA
TATAACATGAAATTAAGGGCTGGCAGAGGCTTTACTCTTGAGGAACTCAA
GGTTTCTTTCTTCTTTTTCTTTTAGTTTCATTTTCGATAATTGATTTGAT
TAATATATTGCTTATGCATTCACATTATGTTAATTATGATTCAGTTGATG
TTTCTTTGTTATTATTGCTTTAGTTAATCTTATTCTCTTTACCCTAAGGC
TGCTGGAATTCCCAAGAAC
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