CX294767
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_CAEEL (60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=2 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 2.608e-16 Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 2 Query: 320 RQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457 RQ KAV+I PRP AG LR VV +YN K R GRGF+L+ELK + Sbjct: 39 RQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAA 84 HSP 2 Score: 51.9878 bits (123), Expect = 2.608e-16 Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 3 Query: 111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 N ++ N HF+KHW +KTWF+QPARK RRR R Sbjct: 6 NQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNR 39
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_CANAL (60S ribosomal protein L13 OS=Candida albicans GN=RPL13 PE=3 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 4.211e-12 Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 2 Query: 317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELK 451 +R +KA KI PRP LRPVV T+KYN K+RAGRGFTL ELK Sbjct: 38 SRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKVRAGRGFTLAELK 81 HSP 2 Score: 35.8094 bits (81), Expect = 4.211e-12 Identity = 14/29 (48.28%), Postives = 18/29 (62.07%), Query Frame = 3 Query: 126 NGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 N HF+KHWQ V+ F+Q +K RR R Sbjct: 11 NNHFRKHWQERVRVHFDQAGKKASRRQSR 39
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_LUMRU (60S ribosomal protein L13 OS=Lumbricus rubellus GN=RPL13 PE=2 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 4.224e-12 Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 2 Query: 317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457 AR+KKA+ I PRP AG LRP V QT KYN +LR GRGF+L+ELK + Sbjct: 14 ARRKKALAIAPRPAAGSLRPQVRCQTFKYNTRLREGRGFSLDELKAA 60 HSP 2 Score: 28.4906 bits (62), Expect = 4.224e-12 Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 3 Query: 171 FNQPARKNRRRVGR 212 FNQPARK RRRV R Sbjct: 2 FNQPARKERRRVAR 15
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13_SACEX (60S ribosomal protein L13 OS=Saccharomyces exiguus GN=RPL13 PE=3 SV=1) HSP 1 Score: 51.9878 bits (123), Expect = 3.405e-11 Identity = 28/47 (59.57%), Postives = 32/47 (68.09%), Query Frame = 2 Query: 317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457 AR KA KI PRP LRPVV T+KYN K+RAGRGFT E+K + Sbjct: 38 ARVAKAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTFGEVKAA 83 HSP 2 Score: 36.1946 bits (82), Expect = 3.405e-11 Identity = 15/27 (55.56%), Postives = 17/27 (62.96%), Query Frame = 3 Query: 132 HFKKHWQNYVKTWFNQPARKNRRRVGR 212 HF+KHWQ VK FNQ +K RR R Sbjct: 13 HFRKHWQERVKVHFNQAGKKASRRDAR 39
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13B_YEAST (60S ribosomal protein L13-B OS=Saccharomyces cerevisiae GN=RPL13B PE=1 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 4.421e-11 Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 2 Query: 317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457 AR +A KI PRP LRPVV T+KYN K+RAGRGFTL E+K + Sbjct: 38 ARAARAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAA 83 HSP 2 Score: 34.6538 bits (78), Expect = 4.421e-11 Identity = 16/34 (47.06%), Postives = 19/34 (55.88%), Query Frame = 3 Query: 111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 N I HF+KHWQ VK F+Q +K RR R Sbjct: 6 NLPILKNHFRKHWQERVKVHFDQAGKKVSRRNAR 39
BLAST of CX294767 vs. ExPASy Swiss-Prot
Match: RL13A_YEAST (60S ribosomal protein L13-A OS=Saccharomyces cerevisiae GN=RPL13A PE=1 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 4.421e-11 Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 2 Query: 317 ARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKVS 457 AR +A KI PRP LRPVV T+KYN K+RAGRGFTL E+K + Sbjct: 38 ARATRAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAA 83 HSP 2 Score: 34.6538 bits (78), Expect = 4.421e-11 Identity = 16/34 (47.06%), Postives = 19/34 (55.88%), Query Frame = 3 Query: 111 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVGR 212 N I HF+KHWQ VK F+Q +K RR R Sbjct: 6 NLPILKNHFRKHWQERVKVHFDQAGKKVSRRNAR 39 The following BLAST results are available for this feature:
BLAST of CX294767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX294767 ID=CX294767; Name=CX294767; organism=Citrus clementina; type=EST; length=619bpback to top |