CX294781

Overview
NameCX294781
Unique NameCX294781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10184 contig Ccv1_Contig10184:34..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294781 vs. ExPASy Swiss-Prot
Match: PSB8_RAT (Proteasome subunit beta type-8 OS=Rattus norvegicus GN=Psmb8 PE=1 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 2.112e-44
Identity = 95/170 (55.88%), Postives = 116/170 (68.24%), Query Frame = 1
Query:  139 APSFALPLSTDFDEF------QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGH-GSLWIRFTYAY 627
            AP  ALP      EF       ++ K  ++ A GTTTLAF F+ GV+VA DSRAS G YI++  V K+IEINPY+LGTM+G AADCQ+W R L  +CRL+ L N  RISV+ ASKLL+N++  YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G   S     TYAY
Sbjct:   39 APELALPRGMQPTEFLRSFGDDQERKVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATIRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTYAY 208          
BLAST of CX294781 vs. ExPASy Swiss-Prot
Match: PSB8_HUMAN (Proteasome subunit beta type-8 OS=Homo sapiens GN=PSMB8 PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.048e-43
Identity = 100/193 (51.81%), Postives = 123/193 (63.73%), Query Frame = 1
Query:   82 ESTSPFFGSGDELCPELSA----APSFALPLSTDFDEFQK------DTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGH-GSLWIRFTYAY 627
            ES  P  GSG    P   +    +P  ALP      EF +      +    ++ A GTTTLAF F+ GV+ A DSRAS G YIS+  V K+IEINPY+LGTM+G AADCQ+W R L  +CRL+ L N  RISV+ ASKLL+N++  YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G+  S     TYAY
Sbjct:   16 ESALPVAGSGRRSDPGHYSFSMRSPELALPRGMKPTEFFQSLGGDGERNVQIEMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVDEHGTRLSGNMFSTGSGNTYAY 208          
BLAST of CX294781 vs. ExPASy Swiss-Prot
Match: PSB5_YEAST (Proteasome component PRE2 OS=Saccharomyces cerevisiae GN=PRE2 PE=1 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.048e-43
Identity = 94/180 (52.22%), Postives = 122/180 (67.78%), Query Frame = 1
Query:   55 DMKLDTSGLESTSPFFGSGDELCPELSAAPSFALPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKG 591
            +  L++  +   S F      L     A+P   L   TD D    D K  + H  GTTTLAF F+ G++VA DSRA+ G +++SQ+VKK+IEINP++LGTMAGGAADCQFW   LG +CRLHEL  K RISV  ASK+L+N++Y Y+G GLS+GTMI G+  + GP +YYVDS+G RLKG
Sbjct:   23 EQNLESDFVTGASQFQRLAPSLTVPPIASPQQFLRAHTD-DSRNPDCKIKIAH--GTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKG 199          
BLAST of CX294781 vs. ExPASy Swiss-Prot
Match: PSB5_SCHPO (Proteasome subunit beta type-5 OS=Schizosaccharomyces pombe GN=pts1 PE=2 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 2.335e-43
Identity = 88/150 (58.67%), Postives = 112/150 (74.67%), Query Frame = 1
Query:  142 PSFALPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKG 591
            P  +L L    DE  K+    +K   GTTTLAF ++ G++V  DSRAS G  I+SQ+VKK+IEINPY+LGT+AGGAADCQFW   LG++CRLH+L NK  ISV+ ASK+L+NI YSY+G GLS+GTM+AG  + G  LYY+DS+G RLKG
Sbjct:   36 PQSSLYLRNLTDE-TKNKHCLIKMNHGTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAGTGKGGTALYYIDSDGTRLKG 184          
BLAST of CX294781 vs. ExPASy Swiss-Prot
Match: PSB8_MOUSE (Proteasome subunit beta type-8 OS=Mus musculus GN=Psmb8 PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.049e-43
Identity = 93/170 (54.71%), Postives = 114/170 (67.06%), Query Frame = 1
Query:  139 APSFALPLSTDFDEF------QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGH-GSLWIRFTYAY 627
            AP  ALP       F       ++    ++ A GTTTLAF F+ GV+VA DSRA+ G YISS  + K+IEINPY+LGTM+G AADCQ+W R L  +CRL+ L N  RISV+ ASKLL+N++  YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G   S     TYAY
Sbjct:   39 APELALPRGMQPTAFLRSFGGDQERNVQIEMAHGTTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTYAY 208          
BLAST of CX294781 vs. ExPASy Swiss-Prot
Match: PSB8_BOVIN (Proteasome subunit beta type-8 OS=Bos taurus GN=PSMB8 PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.049e-43
Identity = 88/158 (55.70%), Postives = 112/158 (70.89%), Query Frame = 1
Query:  139 APSFALPLSTDFDEFQK------DTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGH 594
            +P  ALP      EF +      ++K  ++ A GTTTLAF F+ GV+VA DSRAS G YI++  V K+IEINPY+LGTM+G AADC +W R L  +CRL+ L N  RISV+ ASKLL+N++  YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G+
Sbjct:   39 SPELALPRGMQPTEFFRSLGGNGESKVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGNYIATLKVNKVIEINPYLLGTMSGCAADCLYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGN 196          
BLAST of CX294781 vs. ExPASy Swiss-Prot
Match: PSB8_CANFA (Proteasome subunit beta type-8 OS=Canis familiaris GN=PSMB8 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 8.872e-43
Identity = 94/172 (54.65%), Postives = 116/172 (67.44%), Query Frame = 1
Query:  139 APSFALPLSTDFDEF--------QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGH-GSLWIRFTYAY 627
            AP  A+P      EF        +K+ +  + H  GTTTLAF F+ GV+VA DSRA+ G YISS  V K+IEINP +LGTM+G AADCQ+W R L  +CRL+ L N  RISV+ ASKLL+N++Y YRGM LS+G+MI GWD+ GPGLYYVD  G RL G+  S     TYAY
Sbjct:   39 APELAVPRGMQPTEFFQSLGENGEKNIRKEMVH--GTTTLAFKFQHGVIVAVDSRATAGNYISSSRVNKVIEINPSLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMVYQYRGMDLSMGSMICGWDKKGPGLYYVDQNGTRLSGNMFSTGSGSTYAY 208          
BLAST of CX294781 vs. ExPASy Swiss-Prot
Match: PSB11_HUMAN (Proteasome subunit beta type-11 OS=Homo sapiens GN=PSMB11 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.624e-28
Identity = 67/156 (42.95%), Postives = 97/156 (62.18%), Query Frame = 1
Query:  124 PELSAAPSFALPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKG 591
            P L  A  +A+P   D   F +     L H  GTTTLAF F+ GV+ AAD+R+S G Y++  +  K+I ++ ++LGT +G +ADC  W+R L  + RL EL   +  SV  A+KLL+ ++  YRG+ L V T + GWD +GP L+YV S+G RL+G
Sbjct:   19 PHLPRAGGWAVPRGCDPQTFLQIHGPRLAH--GTTTLAFRFRHGVIAAADTRSSCGSYVACPASCKVIPVHQHLLGTTSGTSADCATWYRVLQRELRLRELREGQLPSVASAAKLLSAMMSQYRGLDLCVATALCGWDRSGPELFYVYSDGTRLQG 172          
BLAST of CX294781 vs. ExPASy Swiss-Prot
Match: PSB11_MOUSE (Proteasome subunit beta type-11 OS=Mus musculus GN=Psmb11 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.375e-27
Identity = 66/154 (42.86%), Postives = 95/154 (61.69%), Query Frame = 1
Query:  130 LSAAPSFALPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKG 591
            L  A  +A+P   D   F +     L H  GTTTLAF F+ GV+ AAD+R+S G Y++  + +K+I ++  +LGT +G +ADC  W+R L  + RL EL   +  SV G +KLLA ++  YRG+ L V T + GWD +GP L+YV S+G  L+G
Sbjct:   21 LPQAGGWAVPRGCDPQTFLQIHGPRLAH--GTTTLAFRFRHGVIAAADTRSSCGSYVACPASRKVIPVHQRLLGTTSGTSADCATWYRVLRRELRLRELREGQLPSVAGTAKLLAAMMSCYRGLDLCVATALCGWDHSGPALFYVYSDGTCLQG 172          
BLAST of CX294781 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.395e-18
Identity = 51/136 (37.50%), Postives = 78/136 (57.35%), Query Frame = 1
Query:  217 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK-------GHGSL 603
            KGTTT+  + K+GV++A + RA+MG +I+S++ KKI +I   M  T AG   D QF  R + I+  L+E+  +R+ +V   + L +N+L SYR     V  +I G D  G  +Y +D  GG ++       G GSL
Sbjct:   10 KGTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSL 145          
The following BLAST results are available for this feature:
BLAST of CX294781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PSB8_RAT2.112e-4455.88Proteasome subunit beta type-8 OS=Rattus norvegicu... [more]
PSB8_HUMAN1.048e-4351.81Proteasome subunit beta type-8 OS=Homo sapiens GN=... [more]
PSB5_YEAST1.048e-4352.22Proteasome component PRE2 OS=Saccharomyces cerevis... [more]
PSB5_SCHPO2.335e-4358.67Proteasome subunit beta type-5 OS=Schizosaccharomy... [more]
PSB8_MOUSE3.049e-4354.71Proteasome subunit beta type-8 OS=Mus musculus GN=... [more]
PSB8_BOVIN3.049e-4355.70Proteasome subunit beta type-8 OS=Bos taurus GN=PS... [more]
PSB8_CANFA8.872e-4354.65Proteasome subunit beta type-8 OS=Canis familiaris... [more]
PSB11_HUMAN1.624e-2842.95Proteasome subunit beta type-11 OS=Homo sapiens GN... [more]
PSB11_MOUSE1.375e-2742.86Proteasome subunit beta type-11 OS=Mus musculus GN... [more]
PSMB_ARCFU3.395e-1837.50Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]

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Properties
Property NameValue
Genbank descriptionC05055H03SK FlavSen1 Citrus clementina cDNA clone C05055H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294781 ID=CX294781; Name=CX294781; organism=Citrus clementina; type=EST; length=629bp
TTTCTGCTCGCAACTCTTAGCTACATTGTCGTTTAATCTTAAATTCAGTG
CGTAGACATGAAGCTCGACACTAGCGGTCTTGAGTCCACTTCTCCATTTT
TCGGGTCAGGCGACGAGCTCTGTCCTGAGTTATCAGCTGCACCATCATTT
GCTCTACCTCTTTCTACTGATTTTGATGAATTTCAAAAGGACACTAAAGC
TACACTGAAGCATGCCAAGGGGACAACCACACTTGCTTTTATCTTTAAAG
AGGGTGTTATGGTGGCTGCTGATTCTCGAGCTAGCATGGGAGGCTATATC
TCATCACAGTCTGTGAAGAAAATTATAGAAATCAATCCTTACATGCTTGG
CACAATGGCTGGAGGAGCAGCCGATTGCCAGTTTTGGCACAGAAATCTGG
GCATTAAGTGCCGACTACATGAATTGGCCAACAAGCGTAGAATTTCAGTT
ACAGGGGCATCAAAGCTGCTGGCCAACATTCTCTACTCTTATCGTGGAAT
GGGGTTGTCTGTTGGGACTATGATTGCTGGATGGGATGAGACTGGTCCTG
GGCTGTATTATGTGGACAGTGAAGGAGGGAGGCTCAAAGGACACGGTTCT
CTGTGGATCAGGTTCACATATGCTTATGG
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