CX294799

Overview
NameCX294799
Unique NameCX294799
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length600
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP167_ARATH (Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.942e-12
Identity = 35/117 (29.91%), Postives = 67/117 (57.26%), Query Frame = 2
Query:  245 IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 595
            I T  +S  ++     +  ++F E+P+ N VS T +I  + +Q     A+ LF +M+ L ++P +FTF S + +S ++  L  GK++H +  +  ++ N  V S+++D+Y K  S+E
Sbjct:  247 IWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLE 363          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.536e-12
Identity = 38/113 (33.63%), Postives = 65/113 (57.52%), Query Frame = 2
Query:  260 VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 598
            V CG      S+    FD +P  + V+ TT+I    +    E A ++FS+M L+ + P EFT  ++  +S+ L  L  G+Q+HA A K+   ++ FVG++++D+Y K  SI++
Sbjct:  563 VKCGD----MSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDD 671          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP252_ARATH (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.536e-12
Identity = 39/111 (35.14%), Postives = 62/111 (55.86%), Query Frame = 2
Query:  266 CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 598
            CGS         +VF+++P  + V+ TT+I  +++     +A+  F++ML     P+EFT  SVI ++ A      G QLH +  K G  SNV VGSA+LDLY +   +++
Sbjct:  108 CGS----LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDD 214          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP353_ARATH (Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.312e-12
Identity = 35/97 (36.08%), Postives = 58/97 (59.79%), Query Frame = 2
Query:  305 VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 595
            +FD++ + +VVS T++I R+ K   + E   LFS ++    RP+E+TF  V+ +   L    LGKQ+H + T+VG     F  S+++D+Y K  +IE
Sbjct:  275 IFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIE 371          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.312e-12
Identity = 39/103 (37.86%), Postives = 62/103 (60.19%), Query Frame = 2
Query:  281 DKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSS 589
            + F + ++VFD++ +LNVV+ T +I R  +     EAI  F  M+L      +FT  SV  +   LE+L+LGKQLH+WA + GL  +  V  +++D+Y K S+
Sbjct:  217 NSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSA 317          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP364_ARATH (Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.325e-12
Identity = 36/99 (36.36%), Postives = 61/99 (61.62%), Query Frame = 2
Query:  302 QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 598
            QVF+ + D + V+ ++++  + +  +YEEA+ L+ R   +++  ++FT  SVI + + L  L  GKQ+HA   K G  SNVFV S+ +D+Y K  S+ E
Sbjct:  218 QVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRE 316          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP206_ARATH (Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 36/98 (36.73%), Postives = 56/98 (57.14%), Query Frame = 2
Query:  305 VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 598
            +F+E+P+ + V+  T+I  + K   Y E+I+LF +M     +PS+FTF  V+ +   L D  LG+QLHA +   G   +  VG+ ILD Y K   + E
Sbjct:  206 LFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLE 303          

HSP 2 Score: 70.0922 bits (170), Expect = 9.636e-12
Identity = 35/109 (32.11%), Postives = 61/109 (55.96%), Query Frame = 2
Query:  272 SESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 598
            ++ + F     +F  +P    VS T +I  + ++  +   + LF++M   N+R  + TF +V+ +S +   L LGKQLHA+  + G   NVF GS ++D+Y K  SI++
Sbjct:  397 AKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKD 505          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PPR75_ARATH (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.644e-11
Identity = 30/104 (28.85%), Postives = 60/104 (57.69%), Query Frame = 2
Query:  287 FSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 598
            +    +VFDE+P  NVV+ T +I  + +   +++ + +F  ML  ++ P+E T  SV+ +   +  L+ G+++H +  K  ++ N   G+ ++DLY+K   +EE
Sbjct:  256 YDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEE 359          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PPR15_ARATH (Pentatricopeptide repeat-containing protein At1g06145 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.644e-11
Identity = 33/97 (34.02%), Postives = 61/97 (62.89%), Query Frame = 2
Query:  305 VFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 595
            +F+++P  +++S TT+I  +++   Y EAI +F +M+   I P E T  +VI +   L  L +GK++H +  + G   +V++GSA++D+Y K  S+E
Sbjct:  243 LFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLE 339          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP378_ARATH (Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.147e-11
Identity = 35/98 (35.71%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  302 QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 595
            +VFD++     V+ T ++  + +     +A+ LF  ++   +    F F  V+ +  +LE+LNLGKQ+HA   K+GL+S V VG+ ++D YIK SS E
Sbjct:  240 RVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFE 337          
The following BLAST results are available for this feature:
BLAST of CX294799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PP167_ARATH1.942e-1229.91Pentatricopeptide repeat-containing protein At2g21... [more]
PP347_ARATH2.536e-1233.63Pentatricopeptide repeat-containing protein At4g33... [more]
PP252_ARATH2.536e-1235.14Pentatricopeptide repeat-containing protein At3g24... [more]
PP353_ARATH3.312e-1236.08Pentatricopeptide repeat-containing protein At4g37... [more]
PP272_ARATH3.312e-1237.86Pentatricopeptide repeat-containing protein At3g49... [more]
PP364_ARATH4.325e-1236.36Pentatricopeptide repeat-containing protein At5g04... [more]
PP206_ARATH7.378e-1236.73Putative pentatricopeptide repeat-containing prote... [more]
PPR75_ARATH1.644e-1128.85Pentatricopeptide repeat-containing protein At1g50... [more]
PPR15_ARATH1.644e-1134.02Pentatricopeptide repeat-containing protein At1g06... [more]
PP378_ARATH2.147e-1135.71Pentatricopeptide repeat-containing protein At5g13... [more]

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Properties
Property NameValue
Genbank descriptionC05056A12SK PhIFruit1 Citrus clementina cDNA clone C05056A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294799 ID=CX294799; Name=CX294799; organism=Citrus clementina; type=EST; length=600bp
TGTACTACTAAAATCAGCATGTGAATGTTACATCAATCATGCATTAATGG
GATAAAGCGAACCTTTCATGGTGTGATTGGGAGTTCAAAATCAAGATAAC
CCGCCAAAATCACACATGATCCAACTATTATGTATATGCAGATCATCTCT
CTCCCTTAACAAGCTCAGCAAACTGCACTCTTTAGCCCCTAATTACCTGA
TTGAAACCCAAAAAGCCAGCGTACAAAAACTCGAAACCCCAGCTATTCGA
ACGGACAGTGTTAGCTGCGGTAGCGAATCAGACAAATTTTCGAGTGTTCA
CCAAGTGTTCGATGAAGTGCCTGACTTAAATGTGGTTTCCGCCACAACCA
TAATTGGCCGTTTTGCTAAGCAGCACCACTATGAAGAAGCCATATATCTC
TTTTCAAGAATGCTTCTGTTGAATATCAGACCCAGCGAGTTCACTTTTGG
ATCTGTAATTCCCTCATCAACTGCTTTAGAGGACCTTAATTTGGGCAAGC
AACTACATGCCTGGGCAACAAAGGTGGGACTTCAGTCGAATGTATTTGTG
GGGAGCGCTATTTTGGATCTTTATATCAAGCTGAGTTCAATCGAGGAAGC
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