CX294818

Overview
NameCX294818
Unique NameCX294818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294818 vs. ExPASy Swiss-Prot
Match: EF1G_DANRE (Elongation factor 1-gamma OS=Danio rerio GN=eef1g PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.203e-13
Identity = 35/108 (32.41%), Postives = 67/108 (62.04%), Query Frame = 3
Query:    3 SLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQVIPQFIMYECY--DMELYDWKKVDINDEAQKERVSQMIEDHEPFEGE 320
            S+W+ +Y++ +E T++F++ N + G  QR+D  RK AF  +++ G+     + G+W+FRGQ +  F + + +  D E Y W+K+D++ E  K     M++++  +EGE
Sbjct:  325 SIWYAEYRFPEELTMAFMSCNLITGMFQRLDKLRKNAFASVILFGANNDSCISGIWVFRGQDL-AFPLSDDWQIDYESYTWRKLDVDSEECK----TMVKEYFAWEGE 427          
BLAST of CX294818 vs. ExPASy Swiss-Prot
Match: EF1G_RABIT (Elongation factor 1-gamma OS=Oryctolagus cuniculus GN=EEF1G PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 2.737e-12
Identity = 37/118 (31.36%), Postives = 64/118 (54.24%), Query Frame = 3
Query:    3 SLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQVIPQFIMYEC-YDMELYDWKKVDINDEAQKERVSQMIEDHEPFE--GEALLDAKCFK 347
            SLW+ +Y++ +E T +F++ N + G  QR+D  RK AF  +++ G+     + G+W+FRGQ +   +  +   D E Y W+K+D + E  +  V +       F+  G+A    K FK
Sbjct:  320 SLWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGIWVFRGQELAFPLSPDWQVDYESYTWRKLDPSSEETQTLVREYFAWEGAFQHVGKAFNQGKVFK 437          
BLAST of CX294818 vs. ExPASy Swiss-Prot
Match: EF1G_MOUSE (Elongation factor 1-gamma OS=Mus musculus GN=Eef1g PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 2.737e-12
Identity = 37/118 (31.36%), Postives = 64/118 (54.24%), Query Frame = 3
Query:    3 SLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQVIPQFIMYEC-YDMELYDWKKVDINDEAQKERVSQMIEDHEPFE--GEALLDAKCFK 347
            SLW+ +Y++ +E T +F++ N + G  QR+D  RK AF  +++ G+     + G+W+FRGQ +   +  +   D E Y W+K+D   E  +  V +       F+  G+A+   K FK
Sbjct:  320 SLWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGTFQHVGKAVNQGKIFK 437          
BLAST of CX294818 vs. ExPASy Swiss-Prot
Match: EF1GA_XENLA (Elongation factor 1-gamma-A OS=Xenopus laevis GN=eef1g-A PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.737e-12
Identity = 35/108 (32.41%), Postives = 64/108 (59.26%), Query Frame = 3
Query:    3 SLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQVIPQFIMYECY--DMELYDWKKVDINDEAQKERVSQMIEDHEPFEGE 320
            S+W+ +YK+ +E T +F++ N + G  QR+D  RK  F  +++ G+     + G+W+FRGQ +  F + E +  D E Y+W+K+D   E  K     +++++  +EGE
Sbjct:  319 SIWYAEYKFPEELTQAFMSCNLITGMFQRLDKLRKTGFASVILFGTNNNSSISGVWVFRGQDL-AFTLSEDWQIDYESYNWRKLDSGSEECK----TLVKEYFAWEGE 421          
BLAST of CX294818 vs. ExPASy Swiss-Prot
Match: EF1G_RAT (Elongation factor 1-gamma OS=Rattus norvegicus GN=Eef1g PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 3.575e-12
Identity = 37/118 (31.36%), Postives = 64/118 (54.24%), Query Frame = 3
Query:    3 SLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQVIPQFIMYEC-YDMELYDWKKVDINDEAQKERVSQMIEDHEPFE--GEALLDAKCFK 347
            SLW+ +Y++ +E T +F++ N + G  QR+D  RK AF  +++ G+     + G+W+FRGQ +   +  +   D E Y W+K+D   E  +  V +       F+  G+A+   K FK
Sbjct:  320 SLWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQDLAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAVNQGKIFK 437          
BLAST of CX294818 vs. ExPASy Swiss-Prot
Match: EF1G_ARTSA (Elongation factor 1-gamma OS=Artemia salina PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 3.575e-12
Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = 3
Query:    3 SLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQVIPQFIMYEC-YDMELYDWKKVDINDEAQKERVSQ 287
            S+W+ +YKY DE    +++ N + G  QR++  RK AF  + V G +    + G+W++RGQ +   +  +   D E YDWKK+D + +  K+ V+Q
Sbjct:  314 SIWYSEYKYQDELAKVYMSCNLITGMFQRIEKMRKQAFASVCVFGEDNDSSISGIWVWRGQDLAFKLSPDWQIDYESYDWKKLDPDAQETKDLVTQ 409          
BLAST of CX294818 vs. ExPASy Swiss-Prot
Match: EF1GB_XENLA (Elongation factor 1-gamma-B OS=Xenopus laevis GN=eef1g-B PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.575e-12
Identity = 37/116 (31.90%), Postives = 65/116 (56.03%), Query Frame = 3
Query:    3 SLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQVIPQFIMYECY--DMELYDWKKVDINDEAQKERVSQMIEDHEPFEGEALLDAKCF 344
            S+W+ +YK+ +E T +F++ N + G  QR+D  RK AF  +++ G+     + G+W+FRG  +  F + E +  D E Y W+K+    E+  E    M++++  +EGE     K F
Sbjct:  320 SIWYAEYKFPEELTQTFMSCNLITGMFQRLDKLRKTAFASVILFGTNNNSTISGVWVFRGHDL-AFTLSEDWQIDYESYTWRKL----ESDSEECRTMVKEYFAWEGEFKHVGKAF 430          
BLAST of CX294818 vs. ExPASy Swiss-Prot
Match: EF1G_MACFA (Elongation factor 1-gamma OS=Macaca fascicularis GN=EEF1G PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.669e-12
Identity = 37/118 (31.36%), Postives = 63/118 (53.39%), Query Frame = 3
Query:    3 SLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQVIPQFIMYEC-YDMELYDWKKVDINDEAQKERVSQMIEDHEPFE--GEALLDAKCFK 347
            SLW+ +Y++ +E T +F++ N + G  QR+D  RK AF  +++ G+     + G+W+FRGQ +   +  +   D E Y W+K+D   E  +  V +       F+  G+A    K FK
Sbjct:  320 SLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAFNQGKIFK 437          
BLAST of CX294818 vs. ExPASy Swiss-Prot
Match: EF1G_HUMAN (Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 4.669e-12
Identity = 37/118 (31.36%), Postives = 63/118 (53.39%), Query Frame = 3
Query:    3 SLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQVIPQFIMYEC-YDMELYDWKKVDINDEAQKERVSQMIEDHEPFE--GEALLDAKCFK 347
            SLW+ +Y++ +E T +F++ N + G  QR+D  RK AF  +++ G+     + G+W+FRGQ +   +  +   D E Y W+K+D   E  +  V +       F+  G+A    K FK
Sbjct:  320 SLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAFNQGKIFK 437          
BLAST of CX294818 vs. ExPASy Swiss-Prot
Match: EF1G_HORSE (Elongation factor 1-gamma OS=Equus caballus GN=EEF1G PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.669e-12
Identity = 37/118 (31.36%), Postives = 63/118 (53.39%), Query Frame = 3
Query:    3 SLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQVIPQFIMYEC-YDMELYDWKKVDINDEAQKERVSQMIEDHEPFE--GEALLDAKCFK 347
            SLW+ +Y++ +E T +F++ N + G  QR+D  RK AF  +++ G+     + G+W+FRGQ +   +  +   D E Y W+K+D   E  +  V +       F+  G+A    K FK
Sbjct:  320 SLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEEAQTLVREYFSWEGAFQHVGKAFNQGKIFK 437          
The following BLAST results are available for this feature:
BLAST of CX294818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
EF1G_DANRE7.203e-1332.41Elongation factor 1-gamma OS=Danio rerio GN=eef1g ... [more]
EF1G_RABIT2.737e-1231.36Elongation factor 1-gamma OS=Oryctolagus cuniculus... [more]
EF1G_MOUSE2.737e-1231.36Elongation factor 1-gamma OS=Mus musculus GN=Eef1g... [more]
EF1GA_XENLA2.737e-1232.41Elongation factor 1-gamma-A OS=Xenopus laevis GN=e... [more]
EF1G_RAT3.575e-1231.36Elongation factor 1-gamma OS=Rattus norvegicus GN=... [more]
EF1G_ARTSA3.575e-1234.38Elongation factor 1-gamma OS=Artemia salina PE=1 S... [more]
EF1GB_XENLA3.575e-1231.90Elongation factor 1-gamma-B OS=Xenopus laevis GN=e... [more]
EF1G_MACFA4.669e-1231.36Elongation factor 1-gamma OS=Macaca fascicularis G... [more]
EF1G_HUMAN4.669e-1231.36Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G... [more]
EF1G_HORSE4.669e-1231.36Elongation factor 1-gamma OS=Equus caballus GN=EEF... [more]

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Properties
Property NameValue
Genbank descriptionC05056C12SK PhIFruit1 Citrus clementina cDNA clone C05056C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294818 ID=CX294818; Name=CX294818; organism=Citrus clementina; type=EST; length=491bp
ACTCTCTTTGGTTCTGTGATTACAAGTACAATGATGAGAATACAGTCTCA
TTTGTGACTTTGAACAAAGTGGGCGGATTCCTGCAGCGAATGGACTTGGC
TCGTAAGTATGCTTTTGGGAAGATGCTGGTTATTGGCTCGGAGCCACCTT
TCAAGGTAAAGGGTTTGTGGCTTTTCCGTGGACAAGTGATTCCTCAATTT
ATAATGTACGAGTGTTACGACATGGAGTTGTATGATTGGAAGAAGGTGGA
CATCAATGATGAAGCTCAGAAGGAGCGTGTAAGCCAGATGATCGAAGATC
ATGAACCTTTCGAGGGTGAGGCCTTGTTAGATGCCAAGTGCTTCAAGTGA
GATCATCCAGATGGACCAGACCGGGGAAGTAGCTGGTGTGTGTGTGTAAT
GCTGTTGCAATCATTTAAGTTTTCTAATTTTTCATCTTTAGTTTTGTGCT
GTTAGCAAATTGACCCTATTTAAGCATTCAATTGACTTTGA
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