CX294821

Overview
NameCX294821
Unique NameCX294821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length611
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_PONAB (40S ribosomal protein S3 OS=Pongo abelii GN=RPS3 PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 5.414e-82
Identity = 156/178 (87.64%), Postives = 163/178 (91.57%), Query Frame = 3
Query:   78 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            MA QISKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAE+V  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG PVN Y+D+AVRHVLLR
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEEVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLR 178          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS32_XENLA (40S ribosomal protein S3-B OS=Xenopus laevis GN=rps3-B PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.206e-81
Identity = 155/178 (87.08%), Postives = 163/178 (91.57%), Query Frame = 3
Query:   78 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            MA Q+SKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP +TEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG PVN Y+D+AVRHVLLR
Sbjct:    1 MAAQMSKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLR 178          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_ICTPU (40S ribosomal protein S3 OS=Ictalurus punctatus GN=rps3 PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 1.575e-81
Identity = 155/178 (87.08%), Postives = 162/178 (91.01%), Query Frame = 3
Query:   78 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            MA QISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FP  SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG PVN Y+D+AVRHVLLR
Sbjct:    1 MAVQISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPRGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLR 178          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_MANSE (40S ribosomal protein S3 OS=Manduca sexta GN=RpS3 PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.057e-77
Identity = 147/174 (84.48%), Postives = 157/174 (90.23%), Query Frame = 3
Query:   90 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP R+EIII ATRTQ+VLGEKGRRIRELTSVVQKRF  PE SVELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLRFIMESGA+GCEV+VSGKLR QRAKSMKF DG M+ SG P N+Y+++A RHVLLR
Sbjct:    6 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 179          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_SCHPO (40S ribosomal protein S3 OS=Schizosaccharomyces pombe GN=rps3 PE=1 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 4.439e-76
Identity = 141/177 (79.66%), Postives = 159/177 (89.83%), Query Frame = 3
Query:   81 ATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            A  ISKKRKFVADGVF+AELNE  TREL+E+GYSG EVRVTP R+EIIIRAT TQ+VLGEKGRRIRELT++VQKRFKF EN+VELYAEKV NRGLCA+AQ ESLRYKLL GLAVRRA YGVLR++ME+GAKGCEV++SGKLRA RAKSMKF DG+M+ SGQP  ++IDSA RHVLLR
Sbjct:    4 AFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLR 180          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_DROME (40S ribosomal protein S3 OS=Drosophila melanogaster GN=RpS3 PE=1 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 6.410e-75
Identity = 141/174 (81.03%), Postives = 154/174 (88.51%), Query Frame = 3
Query:   90 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            ISKKRKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII AT+TQ VLGEKGRRIRELT++VQKRF F    +ELYAEKV  RGLCAIAQAESLRYKL GGLAVRRACYGVLR+IMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG P N+Y+++A RHVLLR
Sbjct:    7 ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLR 180          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_CAEEL (40S ribosomal protein S3 OS=Caenorhabditis elegans GN=rps-3 PE=1 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 7.334e-71
Identity = 135/174 (77.59%), Postives = 150/174 (86.21%), Query Frame = 3
Query:   90 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            ++KK+K V  G+F AELN  L +ELAEDGYSGVEVR TP R E+II ATRTQNVLGE+GRRI+ELTSVVQKRF F E SVELYAEKV+NRGLCA+AQ ESLRYKL+GGLAVRRACYGVLRFIMESGA+G EVIVSGKLR QRAK+MKF DG M+ SG PVN+YI  AVRHV LR
Sbjct:    7 VTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLR 180          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_YEAST (40S ribosomal protein S3 OS=Saccharomyces cerevisiae GN=RPS3 PE=1 SV=5)

HSP 1 Score: 265.388 bits (677), Expect = 1.634e-70
Identity = 128/178 (71.91%), Postives = 156/178 (87.64%), Query Frame = 3
Query:   78 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            M   ISKKRK VADGVF+AELNE  TRELAE+GYSGVEVRVTP +TE+IIRATRTQ+VLGE GRRI ELT +VQKRFK+   ++ LYAE+V +RGL A+AQAES+++KLL GLA+RRA YGV+R++MESGAKGCEV+VSGKLRA RAK+MKF DG+++ SGQPVN++ID+A RHVL+R
Sbjct:    1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAKGCEVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMR 178          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_DICDI (40S ribosomal protein S3 OS=Dictyostelium discoideum GN=rps3 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 5.628e-63
Identity = 123/176 (69.89%), Postives = 145/176 (82.39%), Query Frame = 3
Query:   87 QISKKRKFVADGVFFAELNEVLTRELAED-GYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            QISKKRKFVADGVF AELNE+ TRE  +D GYSGVE++ +P  TEIIIRA++TQ V+G   RRI+EL S+VQKRF F E +V L+AEK+ NRGLCA+AQAESL+ KLL GL VR+ACY ++  IM  GAKGCEVIVSGKLRAQRAKSMKF+DGYM+ SGQP  ++ID A RHVLLR
Sbjct:    6 QISKKRKFVADGVFHAELNELFTREFNKDEGYSGVELKTSPGLTEIIIRASKTQAVVGPNARRIQELCSLVQKRFNFKEGTVVLFAEKILNRGLCAVAQAESLKLKLLAGLPVRKACYAIVHQIMTRGAKGCEVIVSGKLRAQRAKSMKFRDGYMIKSGQPSKDFIDFACRHVLLR 181          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_ENCCU (40S ribosomal protein S3 OS=Encephalitozoon cuniculi GN=RPS3 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.764e-32
Identity = 68/181 (37.57%), Postives = 114/181 (62.98%), Query Frame = 3
Query:   54 VIESTESKMATQISKKR---KFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDS 587
            ++ S   K A ++S  +   +F+ +G+  AEL E   + L  +G+S +E+R+     +II++  +    +GEK  R+R+   +  +R + P+ SVE+  EKV+ +GLCA+ QA  +R K+LGG+  RRA    L+    + A+GC++IVSGKL+ QRAKS+KF+DG ++ SG  V +YI++
Sbjct:    1 MVISGNKKFALEMSSDQVLERFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQFQHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHAKAQGCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINT 181          
The following BLAST results are available for this feature:
BLAST of CX294821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS3_PONAB5.414e-8287.6440S ribosomal protein S3 OS=Pongo abelii GN=RPS3 P... [more]
RS32_XENLA1.206e-8187.0840S ribosomal protein S3-B OS=Xenopus laevis GN=rp... [more]
RS3_ICTPU1.575e-8187.0840S ribosomal protein S3 OS=Ictalurus punctatus GN... [more]
RS3_MANSE1.057e-7784.4840S ribosomal protein S3 OS=Manduca sexta GN=RpS3 ... [more]
RS3_SCHPO4.439e-7679.6640S ribosomal protein S3 OS=Schizosaccharomyces po... [more]
RS3_DROME6.410e-7581.0340S ribosomal protein S3 OS=Drosophila melanogaste... [more]
RS3_CAEEL7.334e-7177.5940S ribosomal protein S3 OS=Caenorhabditis elegans... [more]
RS3_YEAST1.634e-7071.9140S ribosomal protein S3 OS=Saccharomyces cerevisi... [more]
RS3_DICDI5.628e-6369.8940S ribosomal protein S3 OS=Dictyostelium discoide... [more]
RS3_ENCCU8.764e-3237.5740S ribosomal protein S3 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionC05056D03SK PhIFruit1 Citrus clementina cDNA clone C05056D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294821 ID=CX294821; Name=CX294821; organism=Citrus clementina; type=EST; length=611bp
GAGCTAGCTGCGCACACAAGCCACCTCATTGAGATCATCAGATCCCTATC
TCTGTAATCGAATCAACAGAAAGCAAAATGGCAACTCAAATCAGCAAGAA
AAGAAAGTTCGTGGCTGATGGCGTGTTTTTCGCGGAGCTTAACGAGGTAC
TGACTAGAGAGCTTGCGGAGGACGGTTATTCTGGAGTAGAGGTCAGGGTA
ACTCCCATGCGTACTGAGATCATCATCCGAGCCACTCGCACTCAGAACGT
TCTTGGTGAGAAAGGGAGGAGAATTAGAGAGCTGACATCAGTGGTGCAGA
AAAGGTTCAAATTCCCGGAGAATAGCGTGGAGCTGTACGCTGAGAAAGTC
AACAATAGAGGACTATGTGCCATTGCTCAAGCCGAGTCTCTTCGCTACAA
GCTCCTTGGTGGGCTTGCTGTTCGCAGGGCTTGCTATGGTGTCTTGAGGT
TCATTATGGAAAGTGGAGCCAAGGGATGTGAGGTCATTGTCAGTGGAAAG
TTGAGGGCACAACGTGCAAAATCAATGAAGTTTAAGGATGGATATATGGT
CTCTTCTGGTCAGCCAGTGAATGAATATATTGACTCTGCTGTGAGACATG
TTCTTTTGAGA
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