CX294821

Overview
NameCX294821
Unique NameCX294821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length611
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15394 contig Ccv1_Contig15394:31..641. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_THEON (30S ribosomal protein S3P OS=Thermococcus onnurineus (strain NA1) GN=rps3p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.500e-27
Identity = 64/171 (37.43%), Postives = 99/171 (57.89%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            +R F+ +GV    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+
Sbjct:    4 ERYFIKEGVREMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGVHFRRAAYAAIRAIMRNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLK 172          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_THEGJ (30S ribosomal protein S3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps3p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.109e-26
Identity = 64/171 (37.43%), Postives = 99/171 (57.89%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            +R F+ +GV    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+
Sbjct:    4 ERYFIKEGVKEMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAASPGYVIGRGGRRIRELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIMRNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLK 172          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_PYRFU (30S ribosomal protein S3P OS=Pyrococcus furiosus GN=rps3p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.891e-26
Identity = 65/171 (38.01%), Postives = 98/171 (57.31%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            +R F+ + V    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++K+F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  LR IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+
Sbjct:    4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLK 172          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_THESM (30S ribosomal protein S3P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps3p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.226e-26
Identity = 61/171 (35.67%), Postives = 98/171 (57.31%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            +R F+ +G+    ++E L +EL   GY G++++ TP+ T+++I   R   V+G  GR+IRELT ++++RF      +E+  E++ N    A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+
Sbjct:    4 ERYFIKEGIKEMLIDEYLEKELRRAGYGGLDIKKTPLGTKVVIFVERPGFVIGRGGRKIRELTRILERRFNLENPQIEV--EEIKNSYFNAKVQATRLAQALERGVHFRRAAYAAIRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYIAKVGNPAETLVSRGYAQALLK 172          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_PYRKO (30S ribosomal protein S3P OS=Pyrococcus kodakaraensis GN=rps3p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.601e-25
Identity = 63/171 (36.84%), Postives = 97/171 (56.73%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            +R F+ +GV    ++E L +EL   GY G++++ TP+ T++ I A     V+G  GRRIRELT +++K+F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +        L+
Sbjct:    4 ERYFIKEGVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVTIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIMRNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSRGYAQAQLK 172          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_PYRAB (30S ribosomal protein S3P OS=Pyrococcus abyssi GN=rps3p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.566e-25
Identity = 60/171 (35.09%), Postives = 98/171 (57.31%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            +R F+ + V    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +++  +++ N  L A  QA  +   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+
Sbjct:    4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLK 172          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_PYRHO (30S ribosomal protein S3P OS=Pyrococcus horikoshii GN=rps3p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.083e-25
Identity = 60/171 (35.09%), Postives = 98/171 (57.31%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            +R F+ + V    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +++  +++ N  L A  QA  +   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+
Sbjct:    4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYSAMRAIMNNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLK 172          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_METBF (30S ribosomal protein S3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps3p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.943e-24
Identity = 62/162 (38.27%), Postives = 93/162 (57.41%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYID 584
            +RKFV DG   A ++E    +L   GY G+E+  TPM T+I+I + +   V+G+ G+ IR+LT  V  R+      ++  A++V    L A   A  L   +  G   R+A +  LR +M +GA GCEV++SGKL   R++  KF DGY+  SG PV+E +D
Sbjct:    4 ERKFVNDGFVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRKLTRDVAARYNLENPQID--AQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVDEVVD 163          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_METAC (30S ribosomal protein S3P OS=Methanosarcina acetivorans GN=rps3p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.784e-24
Identity = 60/162 (37.04%), Postives = 93/162 (57.41%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYID 584
            ++KFV DG   A ++E    +L+  GY G+E+  TPM T+I+I + +   V+G+ G+ IR+LT  V  ++      ++  A++V    L A   A  L   +  G   R+A +  LR +M +GA GCEV++SGKL   R++  KF DGY+  SG PV E +D
Sbjct:    4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRKLTRDVANKYSLENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVD 163          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_METMA (30S ribosomal protein S3P OS=Methanosarcina mazei GN=rps3p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.338e-23
Identity = 60/162 (37.04%), Postives = 92/162 (56.79%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYID 584
            ++KFV DG   A ++E    +L   GY G+E+  TPM T+III + +   V+G+ G+ IR+LT  V  ++      ++  A++V    L A   A  L   +  G   R+A +  +R +M +GA GCEV++SGKL   R++  KF DGY+  SG PV E +D
Sbjct:    4 EKKFVNDGYVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIIIYSEKPGMVIGKAGKVIRKLTRDVATKYNLENPQID--AQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTIRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGHPVEEVVD 163          
The following BLAST results are available for this feature:
BLAST of CX294821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS3_THEON6.500e-2737.4330S ribosomal protein S3P OS=Thermococcus onnurine... [more]
RS3_THEGJ1.109e-2637.4330S ribosomal protein S3P OS=Thermococcus gammatol... [more]
RS3_PYRFU1.891e-2638.0130S ribosomal protein S3P OS=Pyrococcus furiosus G... [more]
RS3_THESM3.226e-2635.6730S ribosomal protein S3P OS=Thermococcus sibiricu... [more]
RS3_PYRKO1.601e-2536.8430S ribosomal protein S3P OS=Pyrococcus kodakaraen... [more]
RS3_PYRAB3.566e-2535.0930S ribosomal protein S3P OS=Pyrococcus abyssi GN=... [more]
RS3_PYRHO6.083e-2535.0930S ribosomal protein S3P OS=Pyrococcus horikoshii... [more]
RS3_METBF3.943e-2438.2730S ribosomal protein S3P OS=Methanosarcina barker... [more]
RS3_METAC8.784e-2437.0430S ribosomal protein S3P OS=Methanosarcina acetiv... [more]
RS3_METMA3.338e-2337.0430S ribosomal protein S3P OS=Methanosarcina mazei ... [more]

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Properties
Property NameValue
Genbank descriptionC05056D03SK PhIFruit1 Citrus clementina cDNA clone C05056D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294821 ID=CX294821; Name=CX294821; organism=Citrus clementina; type=EST; length=611bp
GAGCTAGCTGCGCACACAAGCCACCTCATTGAGATCATCAGATCCCTATC
TCTGTAATCGAATCAACAGAAAGCAAAATGGCAACTCAAATCAGCAAGAA
AAGAAAGTTCGTGGCTGATGGCGTGTTTTTCGCGGAGCTTAACGAGGTAC
TGACTAGAGAGCTTGCGGAGGACGGTTATTCTGGAGTAGAGGTCAGGGTA
ACTCCCATGCGTACTGAGATCATCATCCGAGCCACTCGCACTCAGAACGT
TCTTGGTGAGAAAGGGAGGAGAATTAGAGAGCTGACATCAGTGGTGCAGA
AAAGGTTCAAATTCCCGGAGAATAGCGTGGAGCTGTACGCTGAGAAAGTC
AACAATAGAGGACTATGTGCCATTGCTCAAGCCGAGTCTCTTCGCTACAA
GCTCCTTGGTGGGCTTGCTGTTCGCAGGGCTTGCTATGGTGTCTTGAGGT
TCATTATGGAAAGTGGAGCCAAGGGATGTGAGGTCATTGTCAGTGGAAAG
TTGAGGGCACAACGTGCAAAATCAATGAAGTTTAAGGATGGATATATGGT
CTCTTCTGGTCAGCCAGTGAATGAATATATTGACTCTGCTGTGAGACATG
TTCTTTTGAGA
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