CX294821

Overview
NameCX294821
Unique NameCX294821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length611
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15394 contig Ccv1_Contig15394:31..641. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_METTH (30S ribosomal protein S3P OS=Methanobacterium thermoautotrophicum GN=rps3p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.392e-21
Identity = 56/171 (32.75%), Postives = 95/171 (55.56%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            ++ FV +G+    ++E L +EL   GY G++V+VTPM T +++ A R   V+G  G+ +R +T  ++ +F      VE+  ++V+   L     A  +   L  G+  RR  Y  +R IM +GA+G EV +SGK+R  R+ + KF DGY+   G+P  +++      V L+
Sbjct:    3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVRAITQKLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIMAAGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLK 171          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_IGNH4 (30S ribosomal protein S3P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps3p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.124e-21
Identity = 64/171 (37.43%), Postives = 94/171 (54.97%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            K+ F+   +   +++E L  +    GYS VE++ TPM T +II A R+  ++G +G+ I+++T V+++ F  P   V +   KV    L A   A  L   L  G   RRA Y  LR IM +GA G +V VSGKLR +RA+  K+  G +  SG  V    D A+ HVLL+
Sbjct:    9 KKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAIIGRRGQTIKQITKVLEEWFGIPNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLK 177          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_UNCMA (30S ribosomal protein S3P OS=Uncultured methanogenic archaeon RC-I GN=rps3p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.329e-21
Identity = 58/162 (35.80%), Postives = 89/162 (54.94%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYID 584
            ++KFV +G   A ++E    +L   GY G+E+  TPM T+I ++A +   ++G+ G+ IR  T  +  RFK     +++  ++V    L A   A  L   L  G   R+A    L+ IM+SGA GCEVI++GKL   R +  KF  GY+   G+PV E +D
Sbjct:    4 EKKFVQEGFKKAMVDEYFLEKLERAGYGGMEINRTPMGTQITLKAEKPGMIIGKAGKSIRRYTKEMDMRFKMDNPQIDV--QEVKKPELNAQMMATRLANALERGWYFRKAGQSTLQRIMDSGAMGCEVIIAGKLTGARKRREKFIAGYIKHCGKPVEELVD 163          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_HALSA (30S ribosomal protein S3P OS=Halobacterium salinarium GN=rps3p PE=3 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 1.551e-20
Identity = 52/160 (32.50%), Postives = 94/160 (58.75%), Query Frame = 3
Query:  105 KFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYID 584
            +F+  G+  ++++E    ELA  GY G+E+  TPM  +I+++A +   V+G+ G+ IR++T+ +++RF   +  +++  ++V    L A   A+ L   L  G   R+A +  +  IMESGA G E+++SGK+   R +  KF  GY+  +G+P  E +D
Sbjct:    6 EFIEQGLQRSQIDEFFAEELARAGYGGMELAPTPMGMQIVLKAEKPGMVIGKGGKNIRKITTQLEERFDLEDPQIDV--QEVEEPDLNAQIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGNRGRVEKFNRGYIKHNGEPAEEIVD 163          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_SULSO (30S ribosomal protein S3P OS=Sulfolobus solfataricus GN=rps3p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.025e-20
Identity = 59/171 (34.50%), Postives = 91/171 (53.22%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            KR F+   +   +++E L ++     Y+GVEV  TP+ T +II A R   ++G  GR I++L  + +K F      + +    V N  L A   A  L   L  G   RRA +  +R IM +GA G E+I+SGKL  +RA+  K K+G +  SGQ + + ID A+   +L+
Sbjct:    5 KRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIKQLAQIFEKVFGLENPQITI--TNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIMNAGALGAEIIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAMLK 173          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_META3 (30S ribosomal protein S3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps3p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.025e-20
Identity = 53/162 (32.72%), Postives = 91/162 (56.17%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYID 584
            +R F+ + V    ++E L  +L   GYS ++V+ TP+ T I + A +   V+G KG+ ++ELT  +    K+  N  ++  +++ +  L A   A+ +   L  G+  RR  +  +R +M  GAKG  VIVSGKL  +R+++ K+ +GYM   G+P  E +D
Sbjct:    3 ERTFIKENVMETLVDEYLKNKLPRAGYSHMDVKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETIAT--KYGVNKPQIEVKQIESPDLDAGVVAQKIASSLERGMHFRRVAHSAIRRVMAQGAKGVVVIVSGKLTGERSRTEKYMEGYMKHCGEPSEELVD 162          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_SULAC (30S ribosomal protein S3P OS=Sulfolobus acidocaldarius GN=rps3p PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20
Identity = 62/171 (36.26%), Postives = 93/171 (54.39%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            KR F+        ++E L ++     Y+GVE+  TP+ T +II A R   ++G+ G+ I++L  V++K F      + + A +  N  L A   A  L   L  G   RRA +  +R IM SGA G EVIVSGKL ++RAK  K K+G +  SGQ + + ID A+   +L+
Sbjct:    5 KRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIKQLAQVLEKFFGLENPQITVTAAE--NPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMSSGAVGAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAIGIAMLK 173          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_METST (30S ribosomal protein S3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps3p PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20
Identity = 53/171 (30.99%), Postives = 93/171 (54.39%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            ++ FV +G+    ++E L  +L   GY G++++VTP+ T +I+ A +   V+G  G+ +R +T  ++  F      VE+  ++V+   L     A  +   L  G+  RR  Y ++R IM +GA+G EV +SGK+R  R+   KF +GY+   G+P  +Y+      V L+
Sbjct:    3 EKDFVKEGLKRTRIDEYLETKLERAGYGGMDIQVTPVGTMVIVYAEKPGMVIGRGGKTVRAITKTLKNNFDLENPQVEV--KEVDVPELNPRIMAHKVVAMLQRGMQFRRVAYSIIRRIMSAGAQGVEVTISGKIRGSRSACAKFNEGYIKKCGEPSIKYVKEGFATVQLK 171          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_METKA (30S ribosomal protein S3P OS=Methanopyrus kandleri GN=rps3p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.454e-20
Identity = 60/160 (37.50%), Postives = 87/160 (54.37%), Query Frame = 3
Query:  102 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYI 581
            +KFV  G+   EL+E L  EL   GY G+ ++  P  T+II    R    +G +GR IR +   VQ+RF      V +  +++ +  L     A  L   L  G+  RRA YG LR IM +GAKG  +I+SGKL   RA++ KF +G +   G+P +EY+
Sbjct:   12 KKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIAIGRRGRNIRRVEEEVQERFPLL-GRVSIEVKELPSPELNPRVVARRLASALERGIHFRRAAYGALRRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYM 170          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_METM5 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps3p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.512e-20
Identity = 52/164 (31.71%), Postives = 88/164 (53.66%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSA 590
            +R FV + V    ++E    +L   GYS ++++ TP+ T I + A +   V+G KG+ ++ELT  + K +      +E+  ++V N  L        +   L  G+  RR  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    ++ +
Sbjct:    3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLAKEYAVKNPQIEV--KQVENPDLDPAIVGHKIASSLERGMHFRRTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKS 164          
The following BLAST results are available for this feature:
BLAST of CX294821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS3_METTH2.392e-2132.7530S ribosomal protein S3P OS=Methanobacterium ther... [more]
RS3_IGNH43.124e-2137.4330S ribosomal protein S3P OS=Ignicoccus hospitalis... [more]
RS3_UNCMA5.329e-2135.8030S ribosomal protein S3P OS=Uncultured methanogen... [more]
RS3_HALSA1.551e-2032.5030S ribosomal protein S3P OS=Halobacterium salinar... [more]
RS3_SULSO2.025e-2034.5030S ribosomal protein S3P OS=Sulfolobus solfataric... [more]
RS3_META32.025e-2032.7230S ribosomal protein S3P OS=Methanococcus aeolicu... [more]
RS3_SULAC2.645e-2036.2630S ribosomal protein S3P OS=Sulfolobus acidocalda... [more]
RS3_METST2.645e-2030.9930S ribosomal protein S3P OS=Methanosphaera stadtm... [more]
RS3_METKA3.454e-2037.5030S ribosomal protein S3P OS=Methanopyrus kandleri... [more]
RS3_METM54.512e-2031.7130S ribosomal protein S3P OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionC05056D03SK PhIFruit1 Citrus clementina cDNA clone C05056D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294821 ID=CX294821; Name=CX294821; organism=Citrus clementina; type=EST; length=611bp
GAGCTAGCTGCGCACACAAGCCACCTCATTGAGATCATCAGATCCCTATC
TCTGTAATCGAATCAACAGAAAGCAAAATGGCAACTCAAATCAGCAAGAA
AAGAAAGTTCGTGGCTGATGGCGTGTTTTTCGCGGAGCTTAACGAGGTAC
TGACTAGAGAGCTTGCGGAGGACGGTTATTCTGGAGTAGAGGTCAGGGTA
ACTCCCATGCGTACTGAGATCATCATCCGAGCCACTCGCACTCAGAACGT
TCTTGGTGAGAAAGGGAGGAGAATTAGAGAGCTGACATCAGTGGTGCAGA
AAAGGTTCAAATTCCCGGAGAATAGCGTGGAGCTGTACGCTGAGAAAGTC
AACAATAGAGGACTATGTGCCATTGCTCAAGCCGAGTCTCTTCGCTACAA
GCTCCTTGGTGGGCTTGCTGTTCGCAGGGCTTGCTATGGTGTCTTGAGGT
TCATTATGGAAAGTGGAGCCAAGGGATGTGAGGTCATTGTCAGTGGAAAG
TTGAGGGCACAACGTGCAAAATCAATGAAGTTTAAGGATGGATATATGGT
CTCTTCTGGTCAGCCAGTGAATGAATATATTGACTCTGCTGTGAGACATG
TTCTTTTGAGA
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