CX294821
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_METTH (30S ribosomal protein S3P OS=Methanobacterium thermoautotrophicum GN=rps3p PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.392e-21 Identity = 56/171 (32.75%), Postives = 95/171 (55.56%), Query Frame = 3 Query: 99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611 ++ FV +G+ ++E L +EL GY G++V+VTPM T +++ A R V+G G+ +R +T ++ +F VE+ ++V+ L A + L G+ RR Y +R IM +GA+G EV +SGK+R R+ + KF DGY+ G+P +++ V L+ Sbjct: 3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVRAITQKLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIMAAGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLK 171
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_IGNH4 (30S ribosomal protein S3P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps3p PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.124e-21 Identity = 64/171 (37.43%), Postives = 94/171 (54.97%), Query Frame = 3 Query: 99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611 K+ F+ + +++E L + GYS VE++ TPM T +II A R+ ++G +G+ I+++T V+++ F P V + KV L A A L L G RRA Y LR IM +GA G +V VSGKLR +RA+ K+ G + SG V D A+ HVLL+ Sbjct: 9 KKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAIIGRRGQTIKQITKVLEEWFGIPNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLK 177
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_UNCMA (30S ribosomal protein S3P OS=Uncultured methanogenic archaeon RC-I GN=rps3p PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 5.329e-21 Identity = 58/162 (35.80%), Postives = 89/162 (54.94%), Query Frame = 3 Query: 99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYID 584 ++KFV +G A ++E +L GY G+E+ TPM T+I ++A + ++G+ G+ IR T + RFK +++ ++V L A A L L G R+A L+ IM+SGA GCEVI++GKL R + KF GY+ G+PV E +D Sbjct: 4 EKKFVQEGFKKAMVDEYFLEKLERAGYGGMEINRTPMGTQITLKAEKPGMIIGKAGKSIRRYTKEMDMRFKMDNPQIDV--QEVKKPELNAQMMATRLANALERGWYFRKAGQSTLQRIMDSGAMGCEVIIAGKLTGARKRREKFIAGYIKHCGKPVEELVD 163
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_HALSA (30S ribosomal protein S3P OS=Halobacterium salinarium GN=rps3p PE=3 SV=3) HSP 1 Score: 99.3673 bits (246), Expect = 1.551e-20 Identity = 52/160 (32.50%), Postives = 94/160 (58.75%), Query Frame = 3 Query: 105 KFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYID 584 +F+ G+ ++++E ELA GY G+E+ TPM +I+++A + V+G+ G+ IR++T+ +++RF + +++ ++V L A A+ L L G R+A + + IMESGA G E+++SGK+ R + KF GY+ +G+P E +D Sbjct: 6 EFIEQGLQRSQIDEFFAEELARAGYGGMELAPTPMGMQIVLKAEKPGMVIGKGGKNIRKITTQLEERFDLEDPQIDV--QEVEEPDLNAQIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGNRGRVEKFNRGYIKHNGEPAEEIVD 163
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_SULSO (30S ribosomal protein S3P OS=Sulfolobus solfataricus GN=rps3p PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.025e-20 Identity = 59/171 (34.50%), Postives = 91/171 (53.22%), Query Frame = 3 Query: 99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611 KR F+ + +++E L ++ Y+GVEV TP+ T +II A R ++G GR I++L + +K F + + V N L A A L L G RRA + +R IM +GA G E+I+SGKL +RA+ K K+G + SGQ + + ID A+ +L+ Sbjct: 5 KRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIKQLAQIFEKVFGLENPQITI--TNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIMNAGALGAEIIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAMLK 173
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_META3 (30S ribosomal protein S3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps3p PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.025e-20 Identity = 53/162 (32.72%), Postives = 91/162 (56.17%), Query Frame = 3 Query: 99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYID 584 +R F+ + V ++E L +L GYS ++V+ TP+ T I + A + V+G KG+ ++ELT + K+ N ++ +++ + L A A+ + L G+ RR + +R +M GAKG VIVSGKL +R+++ K+ +GYM G+P E +D Sbjct: 3 ERTFIKENVMETLVDEYLKNKLPRAGYSHMDVKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETIAT--KYGVNKPQIEVKQIESPDLDAGVVAQKIASSLERGMHFRRVAHSAIRRVMAQGAKGVVVIVSGKLTGERSRTEKYMEGYMKHCGEPSEELVD 162
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_SULAC (30S ribosomal protein S3P OS=Sulfolobus acidocaldarius GN=rps3p PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20 Identity = 62/171 (36.26%), Postives = 93/171 (54.39%), Query Frame = 3 Query: 99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611 KR F+ ++E L ++ Y+GVE+ TP+ T +II A R ++G+ G+ I++L V++K F + + A + N L A A L L G RRA + +R IM SGA G EVIVSGKL ++RAK K K+G + SGQ + + ID A+ +L+ Sbjct: 5 KRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIKQLAQVLEKFFGLENPQITVTAAE--NPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMSSGAVGAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAIGIAMLK 173
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_METST (30S ribosomal protein S3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps3p PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20 Identity = 53/171 (30.99%), Postives = 93/171 (54.39%), Query Frame = 3 Query: 99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611 ++ FV +G+ ++E L +L GY G++++VTP+ T +I+ A + V+G G+ +R +T ++ F VE+ ++V+ L A + L G+ RR Y ++R IM +GA+G EV +SGK+R R+ KF +GY+ G+P +Y+ V L+ Sbjct: 3 EKDFVKEGLKRTRIDEYLETKLERAGYGGMDIQVTPVGTMVIVYAEKPGMVIGRGGKTVRAITKTLKNNFDLENPQVEV--KEVDVPELNPRIMAHKVVAMLQRGMQFRRVAYSIIRRIMSAGAQGVEVTISGKIRGSRSACAKFNEGYIKKCGEPSIKYVKEGFATVQLK 171
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_METKA (30S ribosomal protein S3P OS=Methanopyrus kandleri GN=rps3p PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 3.454e-20 Identity = 60/160 (37.50%), Postives = 87/160 (54.37%), Query Frame = 3 Query: 102 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYI 581 +KFV G+ EL+E L EL GY G+ ++ P T+II R +G +GR IR + VQ+RF V + +++ + L A L L G+ RRA YG LR IM +GAKG +I+SGKL RA++ KF +G + G+P +EY+ Sbjct: 12 KKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIAIGRRGRNIRRVEEEVQERFPLL-GRVSIEVKELPSPELNPRVVARRLASALERGIHFRRAAYGALRRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYM 170
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_METM5 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps3p PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 4.512e-20 Identity = 52/164 (31.71%), Postives = 88/164 (53.66%), Query Frame = 3 Query: 99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSA 590 +R FV + V ++E +L GYS ++++ TP+ T I + A + V+G KG+ ++ELT + K + +E+ ++V N L + L G+ RR + +R +M SGAKG +IVSGKL +R+++ KF DGYM G+P ++ + Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLAKEYAVKNPQIEV--KQVENPDLDPAIVGHKIASSLERGMHFRRTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKS 164 The following BLAST results are available for this feature:
BLAST of CX294821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 70
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294821 ID=CX294821; Name=CX294821; organism=Citrus clementina; type=EST; length=611bpback to top |