CX294821
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_HALWD (30S ribosomal protein S3P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps3p PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 4.512e-20 Identity = 51/165 (30.91%), Postives = 98/165 (59.39%), Query Frame = 3 Query: 90 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYID 584 ++ + +F+ +G+ ++++E EL GY G++V TPM T+I+++A + V+G+ G+ IR++T ++ RF + +++ ++V+ L A A+ L L G R+A + + I+ESGA G E+++SGK+ R++ KF GY+ +G+P E +D Sbjct: 1 MADEHQFIENGLQRSQIDEFFADELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKVTRELEDRFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIIESGALGAEIVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVD 163
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_METS3 (30S ribosomal protein S3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps3p PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.005e-19 Identity = 52/171 (30.41%), Postives = 93/171 (54.39%), Query Frame = 3 Query: 99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611 ++ FV +G+ ++E L +EL GY G++V++TP+ T +++ A R V+G G+ +R +T+ ++ F +E+ ++V+ L A + L G+ RR Y +R IM +GA+G EV +SGK+R R+ KF +GY+ G+P ++ V L+ Sbjct: 3 EKDFVTEGLKRTRIDEYLEKELERAGYGGMDVQITPLGTMVVVYAERPGMVIGRGGKNVRAITNTLKNDFGLDNPQIEV--KEVSVPELNPKIMAYKIANMLQRGMHFRRVAYSTIRRIMGAGAQGVEVTISGKIRGSRSAVAKFVEGYIKKCGEPSIRLVEEGFATVQLK 171
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_METMP (30S ribosomal protein S3P OS=Methanococcus maripaludis GN=rps3p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19 Identity = 50/164 (30.49%), Postives = 86/164 (52.44%), Query Frame = 3 Query: 99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSA 590 +R FV + V ++E +L GYS ++ + TP+ T I + A + V+G KG+ ++ELT + + +E+ ++V N L + L G+ R+ + +R +M SGAKG +IVSGKL +R+++ KF DGYM G+P ++ + Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLATEYSVKNPQIEV--KQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKS 164
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_METM7 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps3p PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.111e-18 Identity = 49/164 (29.88%), Postives = 88/164 (53.66%), Query Frame = 3 Query: 99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSA 590 +R FV + V ++E +L GYS ++++ TP+ T I + A + V+G KG+ ++ELT + + N+ ++ ++V + L + L G+ R+ + +R +M SGAKG +IVSGKL +R+++ KF DGYM G+P ++ + Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLSTEYAV--NNPQIEVKQVESPDLDPAIVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKS 164
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_METVS (30S ribosomal protein S3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps3p PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.451e-18 Identity = 49/161 (30.43%), Postives = 87/161 (54.04%), Query Frame = 3 Query: 99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYI 581 +R F+A+ V ++E +L GYS +E++ TP+ T I + A + V+G KG+ ++ELT + + +K +E+ + + L + L G+ R+ + +R +M +GAKG +I+SGKL +R+++ KF DGYM G+P E + Sbjct: 3 ERTFIAENVSETLIDEYFKGKLVRAGYSHLELKKTPIGTRITVFAEKPGFVIGRKGKMVKELTDTLTEVYKVENPQIEV--KPLETPDLDPAIVGHKIAASLEKGMHFRKTAHSAVRRVMAAGAKGVAIIISGKLSGERSRTEKFMDGYMKHCGEPAEELV 161
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_METM6 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps3p PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.451e-18 Identity = 49/164 (29.88%), Postives = 88/164 (53.66%), Query Frame = 3 Query: 99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSA 590 +R FV + V ++E +L GYS ++++ TP+ T I + A + V+G KG+ ++ELT + + N+ ++ ++V + L + L G+ R+ + +R +M SGAKG +IVSGKL +R+++ KF DGYM G+P ++ + Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLSTEYAV--NNPQIEVKQVESPDLDPAIVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKS 164
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_HYPBU (30S ribosomal protein S3P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps3p PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.895e-18 Identity = 51/171 (29.82%), Postives = 91/171 (53.22%), Query Frame = 3 Query: 99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611 KR F+ + +++E L + GY+GV++ P+ T +II A R ++G +G IR+L ++ + F ++ ++ +V N L A A + L G RR + R ++ +GA G ++++SGKLR +RA+ K + G + ++G V +D AV HV L+ Sbjct: 5 KRYFIKKAMVQTQIDEYLAKRFYRAGYAGVQIIQFPLGTRVIIYAERPAMIIGRRGETIRQLAAIFEHEFGL--SNPQITVRRVENPDLNARVVASRIAVLLERGAYYRRVANVMARRVLNAGAIGVQIVISGKLRTERARYEKVRRGKVYTTGHQVEYMVDRAVMHVTLK 173
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_SULTO (30S ribosomal protein S3P OS=Sulfolobus tokodaii GN=rps3p PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.233e-18 Identity = 56/171 (32.75%), Postives = 95/171 (55.56%), Query Frame = 3 Query: 99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611 K+ F+ + ++E L ++ Y+GVE+ TP+ T +II A R ++G+ G+ I++L ++++ F ++ ++ V N L A A L L G RRA + +R IM +GA G EVI+SGKL ++RAK K K+G + SG +++ +D AV +L+ Sbjct: 5 KKYFLQRSMTKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPALIIGKGGKTIKQLAQMLERYFGL--DNPQITVTSVENPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMNAGALGAEVIISGKLTSERAKYEKLKEGVVYKSGAFLDKIVDRAVAIAMLK 173
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_AERPE (30S ribosomal protein S3P OS=Aeropyrum pernix GN=rps3p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.223e-18 Identity = 60/177 (33.90%), Postives = 91/177 (51.41%), Query Frame = 3 Query: 78 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLL 608 M T++ K F+ G+ +++E L + E GYS V+V T + T I I A R ++G +G IR L V Q F P + + E+ N L A QA + + G+ RR + + IM +GA G E+ +SGKL ++RA+ KFK G + SG V+E +D A + L Sbjct: 1 MPTKVVKH--FLNQGLLRTKIDEWLAQNFYEAGYSRVKVVQTSLGTNITIWAERPALIIGRRGATIRRLQEVFQTVFGLPNPRIRV--EQPENPMLDARVQAFRIARSIERGIHFRRVAFAAINRIMSNGALGVEITISGKLTSERARFEKFKAGKVYKSGHKVDELVDRASAYARL 173
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_ARCFU (30S ribosomal protein S3P OS=Archaeoglobus fulgidus GN=rps3p PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.358e-16 Identity = 55/161 (34.16%), Postives = 87/161 (54.04%), Query Frame = 3 Query: 99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYI 581 +RKFV + + + E + E+ G+ GV++ TP+ T++ + R V+G+ GRRI+ LT +K F + ++ ++V A A L L G RRA Y L IME+GAKGCE+ +SGKL ++RA++ KF G +V +G P + Sbjct: 4 ERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIKALT---EKLKDFGIENPQVSVDEVEKPEFNAQLMASLLARALERGWYFRRAGYRFLYRIMEAGAKGCEIEISGKLVSERARTEKFVAGTIVHTGDPAESMV 161 The following BLAST results are available for this feature:
BLAST of CX294821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 70
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294821 ID=CX294821; Name=CX294821; organism=Citrus clementina; type=EST; length=611bpback to top |