CX294821

Overview
NameCX294821
Unique NameCX294821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length611
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_HALWD (30S ribosomal protein S3P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps3p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.512e-20
Identity = 51/165 (30.91%), Postives = 98/165 (59.39%), Query Frame = 3
Query:   90 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYID 584
            ++ + +F+ +G+  ++++E    EL   GY G++V  TPM T+I+++A +   V+G+ G+ IR++T  ++ RF   +  +++  ++V+   L A   A+ L   L  G   R+A +  +  I+ESGA G E+++SGK+   R++  KF  GY+  +G+P  E +D
Sbjct:    1 MADEHQFIENGLQRSQIDEFFADELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKVTRELEDRFNLDDPQIDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIIESGALGAEIVLSGKVTGARSRVEKFNRGYIKHNGEPAQEIVD 163          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_METS3 (30S ribosomal protein S3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps3p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.005e-19
Identity = 52/171 (30.41%), Postives = 93/171 (54.39%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            ++ FV +G+    ++E L +EL   GY G++V++TP+ T +++ A R   V+G  G+ +R +T+ ++  F      +E+  ++V+   L     A  +   L  G+  RR  Y  +R IM +GA+G EV +SGK+R  R+   KF +GY+   G+P    ++     V L+
Sbjct:    3 EKDFVTEGLKRTRIDEYLEKELERAGYGGMDVQITPLGTMVVVYAERPGMVIGRGGKNVRAITNTLKNDFGLDNPQIEV--KEVSVPELNPKIMAYKIANMLQRGMHFRRVAYSTIRRIMGAGAQGVEVTISGKIRGSRSAVAKFVEGYIKKCGEPSIRLVEEGFATVQLK 171          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_METMP (30S ribosomal protein S3P OS=Methanococcus maripaludis GN=rps3p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19
Identity = 50/164 (30.49%), Postives = 86/164 (52.44%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSA 590
            +R FV + V    ++E    +L   GYS ++ + TP+ T I + A +   V+G KG+ ++ELT  +   +      +E+  ++V N  L        +   L  G+  R+  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    ++ +
Sbjct:    3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLATEYSVKNPQIEV--KQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKS 164          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_METM7 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps3p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.111e-18
Identity = 49/164 (29.88%), Postives = 88/164 (53.66%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSA 590
            +R FV + V    ++E    +L   GYS ++++ TP+ T I + A +   V+G KG+ ++ELT  +   +    N+ ++  ++V +  L        +   L  G+  R+  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    ++ +
Sbjct:    3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLSTEYAV--NNPQIEVKQVESPDLDPAIVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKS 164          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_METVS (30S ribosomal protein S3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps3p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.451e-18
Identity = 49/161 (30.43%), Postives = 87/161 (54.04%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYI 581
            +R F+A+ V    ++E    +L   GYS +E++ TP+ T I + A +   V+G KG+ ++ELT  + + +K     +E+  + +    L        +   L  G+  R+  +  +R +M +GAKG  +I+SGKL  +R+++ KF DGYM   G+P  E +
Sbjct:    3 ERTFIAENVSETLIDEYFKGKLVRAGYSHLELKKTPIGTRITVFAEKPGFVIGRKGKMVKELTDTLTEVYKVENPQIEV--KPLETPDLDPAIVGHKIAASLEKGMHFRKTAHSAVRRVMAAGAKGVAIIISGKLSGERSRTEKFMDGYMKHCGEPAEELV 161          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_METM6 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps3p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.451e-18
Identity = 49/164 (29.88%), Postives = 88/164 (53.66%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSA 590
            +R FV + V    ++E    +L   GYS ++++ TP+ T I + A +   V+G KG+ ++ELT  +   +    N+ ++  ++V +  L        +   L  G+  R+  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    ++ +
Sbjct:    3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLSTEYAV--NNPQIEVKQVESPDLDPAIVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKS 164          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_HYPBU (30S ribosomal protein S3P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps3p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.895e-18
Identity = 51/171 (29.82%), Postives = 91/171 (53.22%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            KR F+   +   +++E L +     GY+GV++   P+ T +II A R   ++G +G  IR+L ++ +  F    ++ ++   +V N  L A   A  +   L  G   RR    + R ++ +GA G ++++SGKLR +RA+  K + G + ++G  V   +D AV HV L+
Sbjct:    5 KRYFIKKAMVQTQIDEYLAKRFYRAGYAGVQIIQFPLGTRVIIYAERPAMIIGRRGETIRQLAAIFEHEFGL--SNPQITVRRVENPDLNARVVASRIAVLLERGAYYRRVANVMARRVLNAGAIGVQIVISGKLRTERARYEKVRRGKVYTTGHQVEYMVDRAVMHVTLK 173          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_SULTO (30S ribosomal protein S3P OS=Sulfolobus tokodaii GN=rps3p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.233e-18
Identity = 56/171 (32.75%), Postives = 95/171 (55.56%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            K+ F+   +    ++E L ++     Y+GVE+  TP+ T +II A R   ++G+ G+ I++L  ++++ F    ++ ++    V N  L A   A  L   L  G   RRA +  +R IM +GA G EVI+SGKL ++RAK  K K+G +  SG  +++ +D AV   +L+
Sbjct:    5 KKYFLQRSMTKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPALIIGKGGKTIKQLAQMLERYFGL--DNPQITVTSVENPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMNAGALGAEVIISGKLTSERAKYEKLKEGVVYKSGAFLDKIVDRAVAIAMLK 173          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_AERPE (30S ribosomal protein S3P OS=Aeropyrum pernix GN=rps3p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.223e-18
Identity = 60/177 (33.90%), Postives = 91/177 (51.41%), Query Frame = 3
Query:   78 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLL 608
            M T++ K   F+  G+   +++E L +   E GYS V+V  T + T I I A R   ++G +G  IR L  V Q  F  P   + +  E+  N  L A  QA  +   +  G+  RR  +  +  IM +GA G E+ +SGKL ++RA+  KFK G +  SG  V+E +D A  +  L
Sbjct:    1 MPTKVVKH--FLNQGLLRTKIDEWLAQNFYEAGYSRVKVVQTSLGTNITIWAERPALIIGRRGATIRRLQEVFQTVFGLPNPRIRV--EQPENPMLDARVQAFRIARSIERGIHFRRVAFAAINRIMSNGALGVEITISGKLTSERARFEKFKAGKVYKSGHKVDELVDRASAYARL 173          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_ARCFU (30S ribosomal protein S3P OS=Archaeoglobus fulgidus GN=rps3p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.358e-16
Identity = 55/161 (34.16%), Postives = 87/161 (54.04%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYI 581
            +RKFV + +    + E +  E+   G+ GV++  TP+ T++ +   R   V+G+ GRRI+ LT   +K   F   + ++  ++V      A   A  L   L  G   RRA Y  L  IME+GAKGCE+ +SGKL ++RA++ KF  G +V +G P    +
Sbjct:    4 ERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIKALT---EKLKDFGIENPQVSVDEVEKPEFNAQLMASLLARALERGWYFRRAGYRFLYRIMEAGAKGCEIEISGKLVSERARTEKFVAGTIVHTGDPAESMV 161          
The following BLAST results are available for this feature:
BLAST of CX294821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS3_HALWD4.512e-2030.9130S ribosomal protein S3P OS=Haloquadratum walsbyi... [more]
RS3_METS31.005e-1930.4130S ribosomal protein S3P OS=Methanobrevibacter sm... [more]
RS3_METMP6.515e-1930.4930S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_METM71.111e-1829.8830S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_METVS1.451e-1830.4330S ribosomal protein S3P OS=Methanococcus vanniel... [more]
RS3_METM61.451e-1829.8830S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_HYPBU1.895e-1829.8230S ribosomal protein S3P OS=Hyperthermus butylicu... [more]
RS3_SULTO3.233e-1832.7530S ribosomal protein S3P OS=Sulfolobus tokodaii G... [more]
RS3_AERPE4.223e-1833.9030S ribosomal protein S3P OS=Aeropyrum pernix GN=r... [more]
RS3_ARCFU1.358e-1634.1630S ribosomal protein S3P OS=Archaeoglobus fulgidu... [more]

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Properties
Property NameValue
Genbank descriptionC05056D03SK PhIFruit1 Citrus clementina cDNA clone C05056D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294821 ID=CX294821; Name=CX294821; organism=Citrus clementina; type=EST; length=611bp
GAGCTAGCTGCGCACACAAGCCACCTCATTGAGATCATCAGATCCCTATC
TCTGTAATCGAATCAACAGAAAGCAAAATGGCAACTCAAATCAGCAAGAA
AAGAAAGTTCGTGGCTGATGGCGTGTTTTTCGCGGAGCTTAACGAGGTAC
TGACTAGAGAGCTTGCGGAGGACGGTTATTCTGGAGTAGAGGTCAGGGTA
ACTCCCATGCGTACTGAGATCATCATCCGAGCCACTCGCACTCAGAACGT
TCTTGGTGAGAAAGGGAGGAGAATTAGAGAGCTGACATCAGTGGTGCAGA
AAAGGTTCAAATTCCCGGAGAATAGCGTGGAGCTGTACGCTGAGAAAGTC
AACAATAGAGGACTATGTGCCATTGCTCAAGCCGAGTCTCTTCGCTACAA
GCTCCTTGGTGGGCTTGCTGTTCGCAGGGCTTGCTATGGTGTCTTGAGGT
TCATTATGGAAAGTGGAGCCAAGGGATGTGAGGTCATTGTCAGTGGAAAG
TTGAGGGCACAACGTGCAAAATCAATGAAGTTTAAGGATGGATATATGGT
CTCTTCTGGTCAGCCAGTGAATGAATATATTGACTCTGCTGTGAGACATG
TTCTTTTGAGA
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