CX294821
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_METS5 (30S ribosomal protein S3P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps3p PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.774e-16 Identity = 53/171 (30.99%), Postives = 88/171 (51.46%), Query Frame = 3 Query: 99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611 K+ F+ + ++E L +E Y+G E+ TPM T + I A R ++G+ G+ I+ L +++K F + ++ + L A A L L G RRA + +R IM +GA G EVIVSGK+ ++RAK K K+G + +G ++ +D A+ L+ Sbjct: 5 KKYFLQKSMTRVMVDEFLAKEYYNAEYAGSEISKTPMGTRVTIYAGRPAIIIGKDGKTIKRLAQILEKYFNL--ENPQITVTQPEKPELNARVMAFRLAVTLEKGYHFRRAAFMTIRRIMNAGALGAEVIVSGKITSERAKFEKLKEGIVYKTGNNLDVMVDRAIAIATLK 173
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_PYRCJ (30S ribosomal protein S3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps3p PE=3 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 5.162e-16 Identity = 50/159 (31.45%), Postives = 81/159 (50.94%), Query Frame = 3 Query: 138 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611 + E L LA+ GY E+ TP+ T I+I A R ++G KG ++E++S++ + +++ K+ L A + + G+ RR + +R +ME+GAKG E++VSGKL +RAK K G + G + AV HVLL+ Sbjct: 24 IKEFLEYRLAKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEVSSILANKLGVENPQIDVIDVSKIEAPELFPKVVAYRIANAMARGVRFRRVMFVAVRQLMEAGAKGFEIVVSGKLSTERAKFEKITYGKLYKIGYDAKNRVRRAVVHVLLK 182
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_STAMF (30S ribosomal protein S3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps3p PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.562e-15 Identity = 52/158 (32.91%), Postives = 83/158 (52.53%), Query Frame = 3 Query: 138 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611 L+E L + GY+G+E+ TP ++I A ++G G IR+L +++Q F +V + V + L A A + L + RR +LR +ME+GA G E+I+SGKLR++RA+ K K G + +G V+ +D AV LL+ Sbjct: 20 LDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIRKLMTIMQTHFGL--ENVNITVSPVPDPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVMEAGAVGAEIIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLK 175
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_PYRIL (30S ribosomal protein S3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps3p PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.271e-14 Identity = 46/159 (28.93%), Postives = 83/159 (52.20%), Query Frame = 3 Query: 138 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611 + E L +L++ GY E+ TP+ T I+I A R ++G+KG ++E+++++ + +++ K+ + A + + G+ RR + +R +ME+GAKG E++VSGKL +RA+ K G + G + AV HVLL+ Sbjct: 24 IKEFLEYKLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGKKGVIVKEISNILVNKLGVENPQIDVIDVSKIEAPEMFPKVIAYRIANAMAKGVRFRRVMFVAVRQLMEAGAKGFEIVVSGKLSTERARFEKLTYGKLYKIGYDAKNRVRRAVVHVLLK 182
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_PYRAE (30S ribosomal protein S3P OS=Pyrobaculum aerophilum GN=rps3p PE=3 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 2.169e-14 Identity = 46/159 (28.93%), Postives = 81/159 (50.94%), Query Frame = 3 Query: 138 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611 + E L L++ GY E+ TP+ T I+I A R ++G KG ++E+++++ + +++ K+ + A + + G+ RR + +R +ME+GAKG E++VSGKL +RA+ K G + G + AV HVLL+ Sbjct: 24 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEISNILTTKLGVENPQIDVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLMEAGAKGFEIVVSGKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLLK 182
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_PYRAR (30S ribosomal protein S3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps3p PE=3 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 4.831e-14 Identity = 45/159 (28.30%), Postives = 80/159 (50.31%), Query Frame = 3 Query: 138 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611 + E L L++ GY E+ TP+ T I+I A R ++G KG ++E+++++ + +++ K+ + A + + G+ RR + +R + E+GAKG E++VSGKL +RA+ K G + G + AV HVLL+ Sbjct: 24 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEVSNILATKLGVENPQIDVIDVSKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFAAIRQLTEAGAKGFEIVVSGKLSTERARFEKQTFGKLYKIGYDAKNRVRRAVVHVLLK 182
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_PICTO (30S ribosomal protein S3P OS=Picrophilus torridus GN=rps3p PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 6.310e-14 Identity = 46/163 (28.22%), Postives = 85/163 (52.15%), Query Frame = 3 Query: 96 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYID 584 K+++FV D + ++E L +E G+ G+E++ TP T I + R V+G G +I+E+T ++KRF +E+ ++VN L ++ + L G R+A LR +++ A G + + GK+ +RA++ KF G + SG+P ++ Sbjct: 2 KEKRFVNDNIKRLLVSEYLRKENDNAGFGGMEMKRTPYGTNITLYVNRPGLVIGRHGTKIKEMTETLEKRFAIESPQIEV--KEVNTPDLNPQIASKKIALSLEKGWNYRKAGNTSLRKMIDLNAPGVLIRIGGKISGERARAQKFMFGKIKYSGEPARSGVE 162
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_THEVO (30S ribosomal protein S3P OS=Thermoplasma volcanium GN=rps3p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.651e-12 Identity = 43/157 (27.39%), Postives = 83/157 (52.87%), Query Frame = 3 Query: 96 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQP 566 K+RKFV + V + E L +E G+ + ++ TP T I + R V+G +G +++++T ++K++ +E+ + V + L A+ + L G + R+A L+ +++GA+G + +SGK+ +RA+ KF G + SG+P Sbjct: 2 KERKFVNEAVKRLLVYEYLVKETENAGFGKMSMKRTPFGTNITLYVNRPGLVIGRRGSKVQQMTETLEKKYAIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLKRTIDAGARGVLIKISGKISGERARYQKFIYGNVKYSGEP 156
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_CENSY (30S ribosomal protein S3P OS=Cenarchaeum symbiosum GN=rps3p PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.462e-12 Identity = 49/157 (31.21%), Postives = 75/157 (47.77%), Query Frame = 3 Query: 135 ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME-SGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHV 602 +L E L + + G+SGVEV P T+I + TR V+G KG IRELT ++K F V++ +++ L + + G A RRA ++ IME A G ++ +SGKLR R+ K G + +G + + V HV Sbjct: 16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDLKSPQVDV--KEIETPELYPGVMCNRMASHIERGTAFRRATMWTIQQIMEKKDAMGVQITISGKLRGDRSAFEKHTSGILPRAGHYADVIVLDDVVHV 170
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_THEAC (30S ribosomal protein S3P OS=Thermoplasma acidophilum GN=rps3p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11 Identity = 42/157 (26.75%), Postives = 82/157 (52.23%), Query Frame = 3 Query: 96 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQP 566 K+RKF+ + V + E + +E G+ + ++ TP T I + R V+G +G +++++T ++K++ +E+ + V + L A+ + L G + R+A L +++GAKG + +SGK+ +RA+ KF G + SG+P Sbjct: 2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKVQQMTDTLEKKYGIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRTIQAGAKGVLIKISGKISGERARYQKFIYGNVKYSGEP 156 The following BLAST results are available for this feature:
BLAST of CX294821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 70
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294821 ID=CX294821; Name=CX294821; organism=Citrus clementina; type=EST; length=611bpback to top |