CX294821

Overview
NameCX294821
Unique NameCX294821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length611
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15394 contig Ccv1_Contig15394:31..641. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_METS5 (30S ribosomal protein S3P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps3p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.774e-16
Identity = 53/171 (30.99%), Postives = 88/171 (51.46%), Query Frame = 3
Query:   99 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            K+ F+   +    ++E L +E     Y+G E+  TPM T + I A R   ++G+ G+ I+ L  +++K F     + ++   +     L A   A  L   L  G   RRA +  +R IM +GA G EVIVSGK+ ++RAK  K K+G +  +G  ++  +D A+    L+
Sbjct:    5 KKYFLQKSMTRVMVDEFLAKEYYNAEYAGSEISKTPMGTRVTIYAGRPAIIIGKDGKTIKRLAQILEKYFNL--ENPQITVTQPEKPELNARVMAFRLAVTLEKGYHFRRAAFMTIRRIMNAGALGAEVIVSGKITSERAKFEKLKEGIVYKTGNNLDVMVDRAIAIATLK 173          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_PYRCJ (30S ribosomal protein S3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps3p PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.162e-16
Identity = 50/159 (31.45%), Postives = 81/159 (50.94%), Query Frame = 3
Query:  138 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            + E L   LA+ GY   E+  TP+ T I+I A R   ++G KG  ++E++S++  +       +++    K+    L     A  +   +  G+  RR  +  +R +ME+GAKG E++VSGKL  +RAK  K   G +   G      +  AV HVLL+
Sbjct:   24 IKEFLEYRLAKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEVSSILANKLGVENPQIDVIDVSKIEAPELFPKVVAYRIANAMARGVRFRRVMFVAVRQLMEAGAKGFEIVVSGKLSTERAKFEKITYGKLYKIGYDAKNRVRRAVVHVLLK 182          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_STAMF (30S ribosomal protein S3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps3p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.562e-15
Identity = 52/158 (32.91%), Postives = 83/158 (52.53%), Query Frame = 3
Query:  138 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            L+E L     + GY+G+E+  TP    ++I A     ++G  G  IR+L +++Q  F     +V +    V +  L A   A  +   L   +  RR    +LR +ME+GA G E+I+SGKLR++RA+  K K G +  +G  V+  +D AV   LL+
Sbjct:   20 LDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIRKLMTIMQTHFGL--ENVNITVSPVPDPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVMEAGAVGAEIIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLK 175          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_PYRIL (30S ribosomal protein S3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps3p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.271e-14
Identity = 46/159 (28.93%), Postives = 83/159 (52.20%), Query Frame = 3
Query:  138 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            + E L  +L++ GY   E+  TP+ T I+I A R   ++G+KG  ++E+++++  +       +++    K+    +     A  +   +  G+  RR  +  +R +ME+GAKG E++VSGKL  +RA+  K   G +   G      +  AV HVLL+
Sbjct:   24 IKEFLEYKLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGKKGVIVKEISNILVNKLGVENPQIDVIDVSKIEAPEMFPKVIAYRIANAMAKGVRFRRVMFVAVRQLMEAGAKGFEIVVSGKLSTERARFEKLTYGKLYKIGYDAKNRVRRAVVHVLLK 182          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_PYRAE (30S ribosomal protein S3P OS=Pyrobaculum aerophilum GN=rps3p PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.169e-14
Identity = 46/159 (28.93%), Postives = 81/159 (50.94%), Query Frame = 3
Query:  138 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            + E L   L++ GY   E+  TP+ T I+I A R   ++G KG  ++E+++++  +       +++    K+    +     A  +   +  G+  RR  +  +R +ME+GAKG E++VSGKL  +RA+  K   G +   G      +  AV HVLL+
Sbjct:   24 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEISNILTTKLGVENPQIDVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLMEAGAKGFEIVVSGKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLLK 182          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_PYRAR (30S ribosomal protein S3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps3p PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.831e-14
Identity = 45/159 (28.30%), Postives = 80/159 (50.31%), Query Frame = 3
Query:  138 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLR 611
            + E L   L++ GY   E+  TP+ T I+I A R   ++G KG  ++E+++++  +       +++    K+    +     A  +   +  G+  RR  +  +R + E+GAKG E++VSGKL  +RA+  K   G +   G      +  AV HVLL+
Sbjct:   24 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEVSNILATKLGVENPQIDVIDVSKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFAAIRQLTEAGAKGFEIVVSGKLSTERARFEKQTFGKLYKIGYDAKNRVRRAVVHVLLK 182          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_PICTO (30S ribosomal protein S3P OS=Picrophilus torridus GN=rps3p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.310e-14
Identity = 46/163 (28.22%), Postives = 85/163 (52.15%), Query Frame = 3
Query:   96 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYID 584
            K+++FV D +    ++E L +E    G+ G+E++ TP  T I +   R   V+G  G +I+E+T  ++KRF      +E+  ++VN   L     ++ +   L  G   R+A    LR +++  A G  + + GK+  +RA++ KF  G +  SG+P    ++
Sbjct:    2 KEKRFVNDNIKRLLVSEYLRKENDNAGFGGMEMKRTPYGTNITLYVNRPGLVIGRHGTKIKEMTETLEKRFAIESPQIEV--KEVNTPDLNPQIASKKIALSLEKGWNYRKAGNTSLRKMIDLNAPGVLIRIGGKISGERARAQKFMFGKIKYSGEPARSGVE 162          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_THEVO (30S ribosomal protein S3P OS=Thermoplasma volcanium GN=rps3p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.651e-12
Identity = 43/157 (27.39%), Postives = 83/157 (52.87%), Query Frame = 3
Query:   96 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQP 566
            K+RKFV + V    + E L +E    G+  + ++ TP  T I +   R   V+G +G +++++T  ++K++      +E+  + V +  L     A+ +   L  G + R+A    L+  +++GA+G  + +SGK+  +RA+  KF  G +  SG+P
Sbjct:    2 KERKFVNEAVKRLLVYEYLVKETENAGFGKMSMKRTPFGTNITLYVNRPGLVIGRRGSKVQQMTETLEKKYAIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLKRTIDAGARGVLIKISGKISGERARYQKFIYGNVKYSGEP 156          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_CENSY (30S ribosomal protein S3P OS=Cenarchaeum symbiosum GN=rps3p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.462e-12
Identity = 49/157 (31.21%), Postives = 75/157 (47.77%), Query Frame = 3
Query:  135 ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME-SGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHV 602
            +L E L   + + G+SGVEV   P  T+I +  TR   V+G KG  IRELT  ++K F      V++  +++    L        +   +  G A RRA    ++ IME   A G ++ +SGKLR  R+   K   G +  +G   +  +   V HV
Sbjct:   16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDLKSPQVDV--KEIETPELYPGVMCNRMASHIERGTAFRRATMWTIQQIMEKKDAMGVQITISGKLRGDRSAFEKHTSGILPRAGHYADVIVLDDVVHV 170          
BLAST of CX294821 vs. ExPASy Swiss-Prot
Match: RS3_THEAC (30S ribosomal protein S3P OS=Thermoplasma acidophilum GN=rps3p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11
Identity = 42/157 (26.75%), Postives = 82/157 (52.23%), Query Frame = 3
Query:   96 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQP 566
            K+RKF+ + V    + E + +E    G+  + ++ TP  T I +   R   V+G +G +++++T  ++K++      +E+  + V +  L     A+ +   L  G + R+A    L   +++GAKG  + +SGK+  +RA+  KF  G +  SG+P
Sbjct:    2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKVQQMTDTLEKKYGIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRTIQAGAKGVLIKISGKISGERARYQKFIYGNVKYSGEP 156          
The following BLAST results are available for this feature:
BLAST of CX294821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS3_METS51.774e-1630.9930S ribosomal protein S3P OS=Metallosphaera sedula... [more]
RS3_PYRCJ5.162e-1631.4530S ribosomal protein S3P OS=Pyrobaculum calidifon... [more]
RS3_STAMF2.562e-1532.9130S ribosomal protein S3P OS=Staphylothermus marin... [more]
RS3_PYRIL1.271e-1428.9330S ribosomal protein S3P OS=Pyrobaculum islandicu... [more]
RS3_PYRAE2.169e-1428.9330S ribosomal protein S3P OS=Pyrobaculum aerophilu... [more]
RS3_PYRAR4.831e-1428.3030S ribosomal protein S3P OS=Pyrobaculum arsenatic... [more]
RS3_PICTO6.310e-1428.2230S ribosomal protein S3P OS=Picrophilus torridus ... [more]
RS3_THEVO2.651e-1227.3930S ribosomal protein S3P OS=Thermoplasma volcaniu... [more]
RS3_CENSY3.462e-1231.2130S ribosomal protein S3P OS=Cenarchaeum symbiosum... [more]
RS3_THEAC1.007e-1126.7530S ribosomal protein S3P OS=Thermoplasma acidophi... [more]

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Properties
Property NameValue
Genbank descriptionC05056D03SK PhIFruit1 Citrus clementina cDNA clone C05056D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294821 ID=CX294821; Name=CX294821; organism=Citrus clementina; type=EST; length=611bp
GAGCTAGCTGCGCACACAAGCCACCTCATTGAGATCATCAGATCCCTATC
TCTGTAATCGAATCAACAGAAAGCAAAATGGCAACTCAAATCAGCAAGAA
AAGAAAGTTCGTGGCTGATGGCGTGTTTTTCGCGGAGCTTAACGAGGTAC
TGACTAGAGAGCTTGCGGAGGACGGTTATTCTGGAGTAGAGGTCAGGGTA
ACTCCCATGCGTACTGAGATCATCATCCGAGCCACTCGCACTCAGAACGT
TCTTGGTGAGAAAGGGAGGAGAATTAGAGAGCTGACATCAGTGGTGCAGA
AAAGGTTCAAATTCCCGGAGAATAGCGTGGAGCTGTACGCTGAGAAAGTC
AACAATAGAGGACTATGTGCCATTGCTCAAGCCGAGTCTCTTCGCTACAA
GCTCCTTGGTGGGCTTGCTGTTCGCAGGGCTTGCTATGGTGTCTTGAGGT
TCATTATGGAAAGTGGAGCCAAGGGATGTGAGGTCATTGTCAGTGGAAAG
TTGAGGGCACAACGTGCAAAATCAATGAAGTTTAAGGATGGATATATGGT
CTCTTCTGGTCAGCCAGTGAATGAATATATTGACTCTGCTGTGAGACATG
TTCTTTTGAGA
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