CX294825

Overview
NameCX294825
Unique NameCX294825
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294825 vs. ExPASy Swiss-Prot
Match: MTHR2_YEAST (Methylenetetrahydrofolate reductase 2 OS=Saccharomyces cerevisiae GN=MET13 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.992e-36
Identity = 88/216 (40.74%), Postives = 120/216 (55.56%), Query Frame = 2
Query:    2 IKTVHLYTLNMEKSALAILLNLGLIE-ESKISRS----LPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGW--DQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKVTALVDKSK 628
            +  +H+YT+N+EK+ L IL  L ++  ES+ +      LPWR   N  R  E+VRPIFW  RP SY++RT  W  D++P GR+GDS +P++G L        R    K  E W+ P  S+ D+     NY  G L+  PWS++  +  E   I   L ++N    +TINSQP VNG RS+    GWG   GYVYQK YLEF     K+  L+D  K
Sbjct:  276 VSHLHIYTMNLEKAPLMILERLNILPTESEFNAHPLAVLPWRKSLNPKRKNEEVRPIFWKRRPYSYVARTSQWAVDEFPNGRFGDSSSPAFGDLDLCGSDLIRQSANKCLELWSTPT-SINDVAFLVINYLNGNLKCLPWSDIP-INDEINPIKAHLIELNQHSIITINSQPQVNGIRSNDKIHGWGPKDGYVYQKQYLEFMLPKTKLPKLIDTLK 489          
BLAST of CX294825 vs. ExPASy Swiss-Prot
Match: MTHR1_YEAST (Methylenetetrahydrofolate reductase 1 OS=Saccharomyces cerevisiae GN=MET12 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.905e-23
Identity = 60/151 (39.74%), Postives = 88/151 (58.28%), Query Frame = 2
Query:  185 LSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKVTALVDKSKLFH 637
            L R   WD++P GR+GDSR+P+YG +  +      S+ K L E W +P K++ D+ + F  Y  G   + PWS+L GL  ET +I E+L ++N +G+LT+ SQPA N   S     GWG   G +YQKA++E F   ++    + K KL H
Sbjct:  402 LGRDATWDEFPNGRFGDSRSPAYGEIDGYGPSIKVSKSKAL-ELWGIP-KTIGDLKDIFIKYLEGSTDAIPWSDL-GLSAETALIQEELIQLNYRGYLTLASQPATNATLSSDKIFGWGPAKGRLYQKAFVEMFIHRQQWETTL-KPKLDH 548          
BLAST of CX294825 vs. ExPASy Swiss-Prot
Match: MTHR2_SCHPO (Methylenetetrahydrofolate reductase 2 OS=Schizosaccharomyces pombe GN=met11 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-17
Identity = 70/250 (28.00%), Postives = 109/250 (43.60%), Query Frame = 2
Query:   14 HLYTLNMEKSALAILLNLGLI-----------EESKISRS------------------LPWRPP-----TNVFRVKEDV-----------RPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDH--QFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKVTALVDK 622
            H  TLN+E+S   IL N GL+           E+ K+ R+                  +P + P     +N+F   +                F  +     L R   WD +  GR+GD R+P+YG +  +      P S   KL   W  P+    DI   F+ + +  + + PW + + ++ ETK I + L K+N   + T+ SQPAVNG  S     GWG  GG V+QKA++E F + + +   + K
Sbjct:  287 HFCTLNLERSVALILKNSGLLTKRWKQVESEMEDEKLLRTTRKRLSLDEPAELHNQVVVPSQQPVADKSSNLFVTSKQSSVSGHKDNLTEEAPFSVSEGSGVLGRQANWDDFTNGRFGDPRSPAYGEIDGYGPTLHFPPSEALKL---WGYPVDE-SDITSLFQKHIMSDISAIPWID-EPVEVETKTIAKYLLKLNGNSWWTVGSQPAVNGAPSADPVFGWGPKGGRVFQKAFVECFVNGKDLKDFITK 531          
The following BLAST results are available for this feature:
BLAST of CX294825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
MTHR2_YEAST2.992e-3640.74Methylenetetrahydrofolate reductase 2 OS=Saccharom... [more]
MTHR1_YEAST2.905e-2339.74Methylenetetrahydrofolate reductase 1 OS=Saccharom... [more]
MTHR2_SCHPO1.824e-1728.00Methylenetetrahydrofolate reductase 2 OS=Schizosac... [more]

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Properties
Property NameValue
Genbank descriptionC05056D08SK PhIFruit1 Citrus clementina cDNA clone C05056D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294825 ID=CX294825; Name=CX294825; organism=Citrus clementina; type=EST; length=653bp
GATTAAGACTGTGCATCTTTATACTCTAAACATGGAGAAATCTGCATTAG
CTATATTATTGAATCTTGGTTTGATTGAAGAGTCCAAAATTTCCAGATCC
TTACCCTGGAGACCCCCTACTAATGTTTTCCGCGTTAAGGAAGATGTTCG
TCCAATATTTTGGGCTAATCGTCCAAAGAGCTACTTATCAAGGACAGTTG
GTTGGGACCAGTATCCACGTGGACGATGGGGTGATTCTCGTAACCCATCA
TATGGTGCTTTATCTGACCATCAGTTTATGCGGCCTCGTTCACGTGACAA
GAAACTTCATGAAGAATGGGCTGTCCCCTTGAAAAGTGTTGAAGATATCT
ATGAAAAATTTAAGAATTACTGCCTTGGGAAATTGAGAAGCAGTCCTTGG
TCAGAGTTAGACGGGCTTCAGCCAGAGACCAAAATCATAAATGAACAGCT
TGGAAAGATCAATGTGAAAGGTTTCCTCACTATCAACAGCCAGCCGGCAG
TCAATGGTGAAAGATCCGATTCATCTTCTGTTGGTTGGGGTGGGCCAGGA
GGATATGTTTATCAGAAAGCATATCTAGAGTTTTTCTGCTCACCAGAGAA
AGTGACTGCACTTGTTGACAAAAGCAAGCTCTTCCATTCATAACTTCATG
GCT
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