CX294831

Overview
NameCX294831
Unique NameCX294831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP3_CAEBR (Actin-related protein 3 OS=Caenorhabditis briggsae GN=arx-1 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.237e-38
Identity = 78/178 (43.82%), Postives = 109/178 (61.24%), Query Frame = 3
Query:   33 TLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSS 542
            T+KYPI HGIV +WD ME+ W    +  LR  PE+H  LLTE PLN   NRE   +IMFE+FNVP +Y+A+QAVL+L AS ++        TG+V+DSGDGV+H +P+ +GY +   I  + +AGRD+T  +  +L ER +        E+ + +KEK  YV  D  +E     + SS
Sbjct:   81 TVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALTASWQSREASDRSLTGLVIDSGDGVTHCIPVADGYVIGSCIKHIPIAGRDITYFIQNLLREREHTIPAEQSYEVAKTIKEKFCYVCPDVMKEFVKYDTDSS 258          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ACT1_ABSGL (Actin-1 (Fragment) OS=Absidia glauca GN=ACT1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.233e-37
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 3
Query:   21 RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQA 251
            RGILTL+YPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK+NREKMTQIMFETFN PA YV+IQA
Sbjct:   64 RGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKSNREKMTQIMFETFNAPAFYVSIQA 140          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP3_CAEEL (Actin-related protein 3 OS=Caenorhabditis elegans GN=arx-1 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.685e-37
Identity = 75/169 (44.38%), Postives = 105/169 (62.13%), Query Frame = 3
Query:   33 TLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQE 515
            T+KYPI HGIV +WD ME+ W    +  LR  PE+H  LLTE PLN   NRE   +IMFE+FNVP +Y+A+QAVL+L AS  +        TG+V+DSGDGV+H +P+ +GY +   I  + +AGRD+T  +  +L +R +        E+ + +KEK  YV  D  +E
Sbjct:   80 TVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALTASWNSREANERSLTGLVIDSGDGVTHCIPVADGYVIGSCIKHIPIAGRDITYFIQSLLRDREHTIPAEQSYEVAKMIKEKFCYVCPDVMKE 248          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: FGR_FSVGR (Tyrosine-protein kinase transforming protein Fgr OS=Feline sarcoma virus (strain Gardner-Rasheed) GN=V-FGR PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.118e-37
Identity = 70/74 (94.59%), Postives = 73/74 (98.65%), Query Frame = 3
Query:   21 RGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVA 242
            RGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+P+ YVA
Sbjct:   84 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNIPSNYVA 157          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP3_ACACA (Actin-related protein 3 OS=Acanthamoeba castellanii GN=ARP3 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.991e-37
Identity = 81/209 (38.76%), Postives = 120/209 (57.42%), Query Frame = 3
Query:   27 ILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDG--------QIITIGAERFV 605
            +  +  P+ HG V NW  ME+ W H  +  LR  PE+H  LLTE PLN   NRE   +IMFETFNVP +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +  +I  + LAGRD+T+ ++++L ER          E+ + +KE  +YV  D  +E +  K  +  +K ++  +G          + +G ERF+
Sbjct:   79 VYQITMPVRHGQVENWTHMEQFWEHCIFKYLRCEPEDHHFLLTEPPLNAPENREYTAEIMFETFNVPGLYIAVQAVLALAASWTSKQVTEKTLTGTVIDSGDGVTHVIPVAEGYVIGSSIKHIPLAGRDITNFVLQLLRERNEKIPPAETLEVAKRIKETFSYVCPDIVKEFK--KYDTEPDKWFKTYEGIESVGKKPYNVDVGYERFL 285          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP3_NEUCR (Actin-related protein 3 OS=Neurospora crassa GN=arp-3 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.179e-36
Identity = 81/203 (39.90%), Postives = 119/203 (58.62%), Query Frame = 3
Query:   36 LKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSS--VEKNYELPDGQIIT--IGAERFVA 608
            L YPI HG + NWD ME+ W ++ +  LRV PE+H  LLTE PLNP  NRE   +I FE+FN   +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +  +I  + +AGRD+T  +  +L +RG      +  +  +++KE+  YV  D  +E        S  ++     P G+ +T  +G ERF+A
Sbjct:   99 LHYPIRHGQIENWDHMERFWSNSIFKYLRVEPEDHHFLLTEPPLNPPENRENTAEIFFESFNCAGLYIAVQAVLALAASWTSSKVQDRSLTGTVIDSGDGVTHVIPVAEGYVIGSSIKSIPIAGRDITYFVQSLLRDRG---EPDSSLKTAQEIKEEYCYVCPDIVKEFAKYDRDRSRFLKHTITQPGGRQVTVDVGYERFMA 298          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP3_DICDI (Actin-related protein 3 OS=Dictyostelium discoideum GN=arpC PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.571e-35
Identity = 81/196 (41.33%), Postives = 112/196 (57.14%), Query Frame = 3
Query:   45 PIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT-------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFVAQ 611
            P++HG + NW  ME+ W H  +  LR  PE+H  LLTE PLN   NRE   +IMFETFNVP +Y+A+QAVL+L AS  +       TG V+DSGDGV+H +PI EGY +  +I  + +AGRD++  + +I+ ER          EI + +KE+ +YV  D  +E     S          PD  I TI A+  V +
Sbjct:   78 PVKHGQIENWTHMEQYWEHCVFKYLRCEPEDHYFLLTEPPLNAPENREFTAEIMFETFNVPGLYIAVQAVLALAASWTSKNAEKTLTGTVIDSGDGVTHVIPISEGYVIGSSIKHIPIAGRDISSYVQQIMREREPNIPPAESLEIAKRVKEQYSYVCPDIVKEFGKYDSE---------PDKWIKTINAQDSVTK 264          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP3_DROME (Actin-related protein 3 OS=Drosophila melanogaster GN=Arp66B PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.276e-34
Identity = 73/169 (43.20%), Postives = 102/169 (60.36%), Query Frame = 3
Query:   33 TLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQE 515
            ++KYP+ HG+V +WD ME+      +  LR  PE+H  LLTE PLN   NRE   +IMFETFNVP +Y+A+QAVL+L AS  +        TGIV+DSGDGV+H +P+ EGY +   I  + +AGR++T  +  +L ER          E  + +KEK  Y+  D  +E
Sbjct:   73 SIKYPVRHGLVEDWDLMERFLEQCVFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFETFNVPGLYIAVQAVLALAASWASRSAEERTLTGIVVDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRNITSFIQSLLREREVGIPPEQSLETAKAIKEKHCYICPDIAKE 241          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP3B_MOUSE (Actin-related protein 3B OS=Mus musculus GN=Actr3b PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.666e-34
Identity = 73/167 (43.71%), Postives = 102/167 (61.08%), Query Frame = 3
Query:   39 KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQE 515
            K+PI HGIV +WD ME+      +  LR  PE+H  L+TE PLN   NRE + +IMFE+FNVP +Y+A+QAVL+L AS  +        TGIV+DSGDGV+H +P+ EGY +   I  + +AGRD+T  + ++L ER          E  + +KEK  Y+  D  +E
Sbjct:   75 KWPIRHGIVEDWDLMERFMEQVVFKYLRAEPEDHYFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYICPDIVRE 241          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP3B_HUMAN (Actin-related protein 3B OS=Homo sapiens GN=ACTR3B PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.176e-34
Identity = 72/167 (43.11%), Postives = 102/167 (61.08%), Query Frame = 3
Query:   39 KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQE 515
            K+PI HGI+ +WD ME+      +  LR  PE+H  L+TE PLN   NRE + +IMFE+FNVP +Y+A+QAVL+L AS  +        TGIV+DSGDGV+H +P+ EGY +   I  + +AGRD+T  + ++L ER          E  + +KEK  Y+  D  +E
Sbjct:   75 KWPIRHGIIEDWDLMERFMEQVVFKYLRAEPEDHYFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYICPDIVKE 241          
The following BLAST results are available for this feature:
BLAST of CX294831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 471
Match NameE-valueIdentityDescription
ARP3_CAEBR4.237e-3843.82Actin-related protein 3 OS=Caenorhabditis briggsae... [more]
ACT1_ABSGL1.233e-3792.21Actin-1 (Fragment) OS=Absidia glauca GN=ACT1 PE=3 ... [more]
ARP3_CAEEL4.685e-3744.38Actin-related protein 3 OS=Caenorhabditis elegans ... [more]
FGR_FSVGR6.118e-3794.59Tyrosine-protein kinase transforming protein Fgr O... [more]
ARP3_ACACA7.991e-3738.76Actin-related protein 3 OS=Acanthamoeba castellani... [more]
ARP3_NEUCR5.179e-3639.90Actin-related protein 3 OS=Neurospora crassa GN=ar... [more]
ARP3_DICDI2.571e-3541.33Actin-related protein 3 OS=Dictyostelium discoideu... [more]
ARP3_DROME1.276e-3443.20Actin-related protein 3 OS=Drosophila melanogaster... [more]
ARP3B_MOUSE1.666e-3443.71Actin-related protein 3B OS=Mus musculus GN=Actr3b... [more]
ARP3B_HUMAN2.176e-3443.11Actin-related protein 3B OS=Homo sapiens GN=ACTR3B... [more]

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Properties
Property NameValue
Genbank descriptionC05056E02SK PhIFruit1 Citrus clementina cDNA clone C05056E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294831 ID=CX294831; Name=CX294831; organism=Citrus clementina; type=EST; length=662bp
CTCGTGCCGAATTCGGCACGAGGGGTATTCTTACTTTGAAATACCCAATT
GAGCACGGTATTGTAAGCAACTGGGATGATATGGAAAAGATCTGGCATCA
TACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCAGTGCTTC
TCACTGAGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAGATGACCCAA
ATTATGTTTGAAACTTTCAATGTGCCAGCCATGTACGTTGCCATCCAGGC
TGTTCTATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTGGATT
CTGGTGATGGTGTGTCTCATACTGTACCAATTTATGAGGGATATGCCCTT
CCTCATGCCATTCTTCGTTTGGACTTGGCTGGTCGTGATCTCACTGATGC
ATTGATGAAGATTCTTACTGAGAGAGGTTACATGTTTACCACCACAGCCG
AACGGGAAATTGTCCGTGACATGAAGGAGAAGCTTGCTTATGTTGCCCTA
GACTATGAGCAAGAACTTGAGACTGCCAAGAGCAGCTCATCTGTTGAGAA
GAACTATGAGCTGCCTGATGGCCAGATCATCACCATTGGAGCTGAAAGAT
TCGTTGCCCAGAGTTCTGTTCAGCCATCTCTCATCGAATGGAGCTGCTGT
ATCATGAACTAC
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