CX294831

Overview
NameCX294831
Unique NameCX294831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ACL6B_MOUSE (Actin-like protein 6B OS=Mus musculus GN=Actl6b PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.150e-25
Identity = 72/232 (31.03%), Postives = 122/232 (52.59%), Query Frame = 3
Query:   45 PIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERG------YMFTTTAEREIVRD-------MKEKLAYVA------------LDYEQELETAKSSSSVEK--------NYELPDGQIITIGAERF-VAQSSVQPSLIE 638
            P+++G++ +W+    I  HT+   ++  P  HPVL++EAP N +A REK+T++MFE +N+PA ++   AVL+ +A+GR+TG+VLDSG   +  +P+++GY L   I++  LAG  ++    ++  E        YM    A +E VR+        KEKL  V+             D++  +     S   E+        +YE+P+G     GAER  + +    PS ++
Sbjct:   84 PLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNTRAKREKLTELMFEQYNIPAFFLCKTAVLTAFANGRSTGLVLDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFISMQCRELFQEMAIDIIPPYMI---AAKEPVREGAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQMPTVHYEMPNGYNTDYGAERLRIPEGLFDPSNVK 312          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ACL6B_HUMAN (Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.150e-25
Identity = 72/232 (31.03%), Postives = 122/232 (52.59%), Query Frame = 3
Query:   45 PIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERG------YMFTTTAEREIVRD-------MKEKLAYVA------------LDYEQELETAKSSSSVEK--------NYELPDGQIITIGAERF-VAQSSVQPSLIE 638
            P+++G++ +W+    I  HT+   ++  P  HPVL++EAP N +A REK+T++MFE +N+PA ++   AVL+ +A+GR+TG+VLDSG   +  +P+++GY L   I++  LAG  ++    ++  E        YM    A +E VR+        KEKL  V+             D++  +     S   E+        +YE+P+G     GAER  + +    PS ++
Sbjct:   84 PLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNTRAKREKLTELMFEQYNIPAFFLCKTAVLTAFANGRSTGLVLDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFISMQCRELFQEMAIDIIPPYMI---AAKEPVREGAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQMPTVHYEMPNGYNTDYGAERLRIPEGLFDPSNVK 312          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ACL6B_BOVIN (Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.150e-25
Identity = 72/232 (31.03%), Postives = 122/232 (52.59%), Query Frame = 3
Query:   45 PIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERG------YMFTTTAEREIVRD-------MKEKLAYVA------------LDYEQELETAKSSSSVEK--------NYELPDGQIITIGAERF-VAQSSVQPSLIE 638
            P+++G++ +W+    I  HT+   ++  P  HPVL++EAP N +A REK+T++MFE +N+PA ++   AVL+ +A+GR+TG+VLDSG   +  +P+++GY L   I++  LAG  ++    ++  E        YM    A +E VR+        KEKL  V+             D++  +     S   E+        +YE+P+G     GAER  + +    PS ++
Sbjct:   84 PLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNTRAKREKLTELMFEQYNIPAFFLCKTAVLTAFANGRSTGLVLDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFISMQCRELFQEMAIDIIPPYMI---AAKEPVREGAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQMPTVHYEMPNGYNTDYGAERLRIPEGLFDPSNVK 312          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ACL6A_MOUSE (Actin-like protein 6A OS=Mus musculus GN=Actl6a PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.150e-25
Identity = 72/232 (31.03%), Postives = 121/232 (52.16%), Query Frame = 3
Query:   45 PIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERG------YMFTTTAEREIVRD-------MKEKLAYVA------------LDYEQELETAKSSSSVEK--------NYELPDGQIITIGAERF-VAQSSVQPSLIE 638
            P+++G+V +WD  + I  HT+   ++     HPVL++EAP N +A REK+T++MFE +++PA ++   AVL+ +A+GR+TG++LDSG   +  +P+++GY L   I++  LAG  +T    ++  E        YM    A +E VR+        KEKL  V              D++  +     S+  E+        +YE P+G     GAER  + +    PS ++
Sbjct:   87 PLKNGMVEDWDSFQAILDHTYKMHVKSEASLHPVLMSEAPWNTRAKREKLTELMFEHYSIPAFFLCKTAVLTAFANGRSTGLILDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFITMQCRELFQEMNIELIPPYMI---ASKEAVREGSPANWKRKEKLPQVTRSWHNYMCNCVIQDFQASVLQVSDSTYDEQVAAQMPTVHYEFPNGYNCDFGAERLKIPEGLFDPSNVK 315          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP7_ORYSJ (Actin-related protein 7 OS=Oryza sativa subsp. japonica GN=ARP7 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.548e-24
Identity = 73/199 (36.68%), Postives = 105/199 (52.76%), Query Frame = 3
Query:   45 PIEHGIVSNWDDMEKIWHHTFYNELR-VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERF-VAQSSVQPSLI 635
            P+  G V +WD ME + ++  Y+ +     +E  +L TE    PKA RE++ Q+MFE FNV   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R D+ G DLT+   + L +     +   +   V  +KE+ A  A D  Q    A  SS   + + LPDGQ+ITI  ER+ V ++  QP ++
Sbjct:   53 PVVRGFVKDWDAMEDLLNYVLYSNIGWEIGDEGQILFTEPLFTPKALREQLAQLMFEKFNVSGFYDSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVCEGAVQHIASKRFDIGGTDLTNLFAEELKKSN--SSVNIDISDVERLKEQYACCAED--QMAFEAIGSSCRPERHTLPDGQVITIEKERYIVGEALFQPHIL 247          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP7_ORYSI (Actin-related protein 7 OS=Oryza sativa subsp. indica GN=ARP7 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.548e-24
Identity = 73/199 (36.68%), Postives = 105/199 (52.76%), Query Frame = 3
Query:   45 PIEHGIVSNWDDMEKIWHHTFYNELR-VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERF-VAQSSVQPSLI 635
            P+  G V +WD ME + ++  Y+ +     +E  +L TE    PKA RE++ Q+MFE FNV   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R D+ G DLT+   + L +     +   +   V  +KE+ A  A D  Q    A  SS   + + LPDGQ+ITI  ER+ V ++  QP ++
Sbjct:   53 PVVRGFVKDWDAMEDLLNYVLYSNIGWEIGDEGQILFTEPLFTPKALREQLAQLMFEKFNVSGFYDSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVCEGAVQHIASKRFDIGGTDLTNLFAEELKKSN--SSVNIDISDVERLKEQYACCAED--QMAFEAIGSSCRPERHTLPDGQVITIEKERYIVGEALFQPHIL 247          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP6_ARATH (Actin-related protein 6 OS=Arabidopsis thaliana GN=ARP6 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.728e-23
Identity = 68/218 (31.19%), Postives = 118/218 (54.13%), Query Frame = 3
Query:   36 LKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVA-IQAVLSLYASGR---------TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSS-VEKNYELPDGQIITIG-------AERFVAQSSVQPSLI 635
            ++ PI+ G + N D   +IW H F + L +AP    +LLTEAPL+  + +    +++FE F   ++Y+A  Q+++ LY + R            +V+D G   +H VP+   + L HAI R+DL G+  T+ L ++++ R        E  +V D KEKL +V+LD  ++L  A++ ++ ++  Y LPDG   T G       A+RF++ S  +  ++
Sbjct:   61 VRRPIDRGYLINSDLQREIWSHLFTSLLHIAPSSSSLLLTEAPLSIPSVQRTTDELVFEDFGFSSLYIAHPQSLVHLYEASRQPDSILSKTQCSLVVDCGFSFTHAVPVLHNFTLNHAIKRIDLGGKAFTNYLKELVSYRS--INVMDETFLVDDAKEKLCFVSLDLLRDLRLARNGNTLIKSTYVLPDGVTHTKGYVKDPQAAKRFLSLSEKESVVV 276          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ACT1_PSEMZ (Actin-1 (Fragment) OS=Pseudotsuga menziesii PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.483e-22
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 3
Query:   42 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 176
            YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK
Sbjct:    1 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 45          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP6_YARLI (Actin-like protein ARP6 OS=Yarrowia lipolytica GN=ARP6 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.674e-18
Identity = 53/189 (28.04%), Postives = 97/189 (51.32%), Query Frame = 3
Query:   30 LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTG--IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIG 590
            L  K P E G + NWD  + +W + FYN       +  +LLT+ PL        + Q++FE +     +    A L  ++SG+     +V+D+G   +H  P+  G      I R+++ G+ +T+ L + ++ R Y      E  I+  +KEK+ +V+ D++++L+ AK + S++  Y LPD +   +G
Sbjct:   47 LVFKRPSEKGQLINWDIQKAVWDNLFYNPQTGVDTDSSLLLTQYPLTLPQVSANIDQVVFEEYGFEQYHRTEAANLVAWSSGQCLDACLVVDAGFNATHVTPVLFGQVHEPGIRRVNVGGKTMTNLLKETVSFRHY--NMMDETYIINRVKEKVCFVSQDFDKDLDLAKKTKSLQVEYALPDYKTTKLG 233          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP6_ORYSJ (Actin-related protein 6 OS=Oryza sativa subsp. japonica GN=ARP6 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.674e-18
Identity = 57/192 (29.69%), Postives = 99/192 (51.56%), Query Frame = 3
Query:   30 LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVA-IQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSS---VEKNYELPDG 572
            +TL+ PI+ G + N +   ++W     N L+V P    +LL E   NP A +    +++FE     ++ VA   +++ LY + R          +V+D G   +H  P+ + + L +A+ R+DL G+ LT+ L ++++ R        E  ++ D KEKL +V+LD   +L  A+ SS+      +Y LPDG
Sbjct:   60 MTLRRPIDRGYLINQEVQREVWERVIRNLLQVDPNNSSLLLVEPQFNPPALQHATDELVFEELGFKSLCVADAPSLVHLYEASRQPSLFRAQCSLVVDCGFSFTHASPVLQNFTLNYAVRRMDLGGKALTNYLKELISYRS--LNVMDETLLIDDAKEKLCFVSLDVPGDLRLARLSSNDNPFRCSYILPDG 249          
The following BLAST results are available for this feature:
BLAST of CX294831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 471
Match NameE-valueIdentityDescription
ACL6B_MOUSE3.150e-2531.03Actin-like protein 6B OS=Mus musculus GN=Actl6b PE... [more]
ACL6B_HUMAN3.150e-2531.03Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE... [more]
ACL6B_BOVIN3.150e-2531.03Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2... [more]
ACL6A_MOUSE3.150e-2531.03Actin-like protein 6A OS=Mus musculus GN=Actl6a PE... [more]
ARP7_ORYSJ4.548e-2436.68Actin-related protein 7 OS=Oryza sativa subsp. jap... [more]
ARP7_ORYSI4.548e-2436.68Actin-related protein 7 OS=Oryza sativa subsp. ind... [more]
ARP6_ARATH1.728e-2331.19Actin-related protein 6 OS=Arabidopsis thaliana GN... [more]
ACT1_PSEMZ9.483e-22100.00Actin-1 (Fragment) OS=Pseudotsuga menziesii PE=1 S... [more]
ARP6_YARLI1.674e-1828.04Actin-like protein ARP6 OS=Yarrowia lipolytica GN=... [more]
ARP6_ORYSJ1.674e-1829.69Actin-related protein 6 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionC05056E02SK PhIFruit1 Citrus clementina cDNA clone C05056E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294831 ID=CX294831; Name=CX294831; organism=Citrus clementina; type=EST; length=662bp
CTCGTGCCGAATTCGGCACGAGGGGTATTCTTACTTTGAAATACCCAATT
GAGCACGGTATTGTAAGCAACTGGGATGATATGGAAAAGATCTGGCATCA
TACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCAGTGCTTC
TCACTGAGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAGATGACCCAA
ATTATGTTTGAAACTTTCAATGTGCCAGCCATGTACGTTGCCATCCAGGC
TGTTCTATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTGGATT
CTGGTGATGGTGTGTCTCATACTGTACCAATTTATGAGGGATATGCCCTT
CCTCATGCCATTCTTCGTTTGGACTTGGCTGGTCGTGATCTCACTGATGC
ATTGATGAAGATTCTTACTGAGAGAGGTTACATGTTTACCACCACAGCCG
AACGGGAAATTGTCCGTGACATGAAGGAGAAGCTTGCTTATGTTGCCCTA
GACTATGAGCAAGAACTTGAGACTGCCAAGAGCAGCTCATCTGTTGAGAA
GAACTATGAGCTGCCTGATGGCCAGATCATCACCATTGGAGCTGAAAGAT
TCGTTGCCCAGAGTTCTGTTCAGCCATCTCTCATCGAATGGAGCTGCTGT
ATCATGAACTAC
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