CX294831

Overview
NameCX294831
Unique NameCX294831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP5_YEAST (Actin-related protein 5 OS=Saccharomyces cerevisiae GN=ARP5 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.501e-14
Identity = 48/176 (27.27%), Postives = 89/176 (50.57%), Query Frame = 3
Query:   45 PIEHGIVSNWDDMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLY---ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKN 554
            P +   V+NW+  E+I  +TF++ L V P+    +P+LLTE     ++ R    QI+FET+NVP +   I ++ S Y    SG  TG+V+  G   ++ +P+ +G  +     R++  G    D L  ++  +   F T         M +   YV+ +Y++++E   +  +++ N
Sbjct:   99 PFDGPFVTNWNLTEEILDYTFHH-LGVVPDNGIPNPILLTERLATVQSQRTNWYQILFETYNVPGVTFGIDSLFSFYNYNPSGNKTGLVISCGHEDTNVIPVVDGAGILTDAKRINWGGHQAVDYLNDLMALKYPYFPTKMSYLQYETMYKDYCYVSRNYDEDIEKILTLENLDTN 273          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP42_SCHPO (SWI/SNF and RSC complexes subunit arp42 OS=Schizosaccharomyces pombe GN=arp42 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.267e-14
Identity = 53/226 (23.45%), Postives = 98/226 (43.36%), Query Frame = 3
Query:   54 HGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKI--------------------LTERGYMFTTTAE-----------------------REIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERF 602
            +GI+ +W+     W      +L+V P E+ +++TE   NP++ R+++ +  FE  +VPA Y+  QAV   +A+ ++T +++D G   +   P+ +G  +   I +  LAG  L   + ++                    + + G M   +A+                       R ++ + KE +  V    +   + AK+SS   K +E PDG     G ERF
Sbjct:   74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSLAGDFLNANIEQLFNTMNIEFPPHYRIARKSVAIQQSGNMANGSADAVKPAVLYPPIQDLTSSYEIFQKRRVIEEWKESVLDV---LDTPFDEAKASSRNPKPFEFPDGVTHKFGQERF 296          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP6_CRYNE (Actin-like protein ARP6 OS=Cryptococcus neoformans GN=ARP6 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.267e-14
Identity = 55/192 (28.65%), Postives = 94/192 (48.96%), Query Frame = 3
Query:   30 LTLKYPIEHGIVSNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVL----SLYASGR----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKS---SSSVEKNYELPD 569
            +  + P E G++ NWD    IW   F  + L + P E  +L+TE   N     E   Q++FE F   + +    A L     LY S +       IV+D G   +H VPI +G  +   + R+D+ G+ LT+ L  +++ R   +    +  +V  ++E   YV+L+++ +LET K+    + + + Y LPD
Sbjct:   58 IVYRRPFEKGMLVNWDAERIIWDRLFSPSVLNINPTETSLLVTEPYFNLPNIAETYDQMIFEEFEFQSYFRCAPAALIPYGGLYESDQGIPPQCTIVIDMGYSYTHVVPIRDGQIVWEHVKRIDVGGKLLTNHLKHLISFR--QWNMIDQTHVVNSVREACGYVSLNWKGDLETCKAKPRKNPIIQEYVLPD 247          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP4_USTMA (Actin-related protein 4 OS=Ustilago maydis GN=ARP4 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.267e-14
Identity = 45/144 (31.25%), Postives = 76/144 (52.78%), Query Frame = 3
Query:  135 EHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTE-RGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYEL 563
            EHP+LLTE   N + +REK+T++ FET   PA Y+A ++VLS +A+G+ + +V+D G     T+PI +G+ L   I R +  G  +  AL+  L   RG  F     + +++           +     E  + +SS  ++Y +
Sbjct:  181 EHPLLLTEPAWNSRESREKLTELAFETLGSPAFYLANRSVLSSFAAGKPSSLVIDVGSTNVSTIPIVDGFILRKGIYRHNNGGEAINRALLYSLHHGRGATFAGVTPQYVIKSRSSVDPGTPANVVLRQERVQGASSSFRSYHI 324          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP6_MOUSE (Actin-related protein 6 OS=Mus musculus GN=Actr6 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 52/191 (27.23%), Postives = 95/191 (49.74%), Query Frame = 3
Query:   45 PIEHGIVSNWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTG-----IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAK---SSSSVEKNYELPDGQIITIG 590
            P + G + NWD   ++W + F  E+ +V   +  +++TE   N  + +E M +I+FE +   A+       LS +   R        I++DSG   +H VP         AI+R+++ G+ LT+ L +I++ R        E  ++  +KE + YV+ D+ ++++ AK     ++V  +Y LPD   I  G
Sbjct:   59 PFQKGYLVNWDVQRQVWDYLFGKEMYQVDFLDTNIIITEPYFNFTSIQESMNEILFEEYQFQAVLRVNAGALSAHRYFRDNPSELCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYR--QLHVMDETHVINQVKEDVCYVSQDFYRDMDIAKLKGEDNTVMIDYVLPDFSTIKKG 247          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP6_HUMAN (Actin-related protein 6 OS=Homo sapiens GN=ACTR6 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 52/191 (27.23%), Postives = 95/191 (49.74%), Query Frame = 3
Query:   45 PIEHGIVSNWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTG-----IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAK---SSSSVEKNYELPDGQIITIG 590
            P + G + NWD   ++W + F  E+ +V   +  +++TE   N  + +E M +I+FE +   A+       LS +   R        I++DSG   +H VP         AI+R+++ G+ LT+ L +I++ R        E  ++  +KE + YV+ D+ ++++ AK     ++V  +Y LPD   I  G
Sbjct:   59 PFQKGYLVNWDVQRQVWDYLFGKEMYQVDFLDTNIIITEPYFNFTSIQESMNEILFEEYQFQAVLRVNAGALSAHRYFRDNPSELCCIIVDSGYSFTHIVPYCRSKKKKEAIIRINVGGKLLTNHLKEIISYR--QLHVMDETHVINQVKEDVCYVSQDFYRDMDIAKLKGEENTVMIDYVLPDFSTIKKG 247          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP5_CHICK (Actin-related protein 5 OS=Gallus gallus GN=ACTR5 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.118e-13
Identity = 50/182 (27.47%), Postives = 93/182 (51.10%), Query Frame = 3
Query:   36 LKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER--GYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKN 554
            L+ P +  +    +  E ++ H F   L VA +   +HP++LTEA  NP  +R+ M++++FE + VP +   + ++ S Y + R     +G+V+ SG   +H +P+ EG        R++L G      L ++L  +  G+    T  R  + ++  + +Y+A DY +EL+  +S    E N
Sbjct:   96 LRSPFDRNVPVQLELQELLFDHVF-QRLGVASQGCVDHPIVLTEAVCNPLYSRQMMSELLFECYQVPKVSYGVDSLYSFYHNRRQNWPCSGLVISSGYQCTHILPVLEGRLDAKNCKRINLGGCQAAVYLQRLLQLKYPGHFAAITLSR--MEEILHEHSYIAEDYTEELQKWRSPEYYENN 274          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP8_ORYSJ (Actin-related protein 8 OS=Oryza sativa subsp. japonica GN=ARP8 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.161e-13
Identity = 56/189 (29.63%), Postives = 92/189 (48.68%), Query Frame = 3
Query:  102 TFYNELRVAPEEHPVLLT----------EAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERF-VAQSSVQPSL 632
            T Y  ++V P   P+++            A  + K  R+ +  ++F+  NVPA+    QAVL+LYA+ RT+GIV++ G   +  VPI++G  +    +  +      LT  L +++ +R   F +      VR +KEKL YVA DYE     A+     + + E+      T+  ERF  A+   QP +
Sbjct:  188 TIYTRMQVKPSTQPIIVVLPLCHSDDTESARASRKQYRDTLYSVLFD-MNVPAVCSVDQAVLALYAAKRTSGIVVNIGFNATSIVPIFQGRVMHEIGVETVGQGALKLTGFLKELMQQRNITFESL---YTVRTIKEKLCYVAADYE-----AEKRKDTQASCEVDGEGWFTLSEERFKTAEILFQPQI 367          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP8_ORYSI (Actin-related protein 8 OS=Oryza sativa subsp. indica GN=ARP8 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.161e-13
Identity = 56/189 (29.63%), Postives = 92/189 (48.68%), Query Frame = 3
Query:  102 TFYNELRVAPEEHPVLLT----------EAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERF-VAQSSVQPSL 632
            T Y  ++V P   P+++            A  + K  R+ +  ++F+  NVPA+    QAVL+LYA+ RT+GIV++ G   +  VPI++G  +    +  +      LT  L +++ +R   F +      VR +KEKL YVA DYE     A+     + + E+      T+  ERF  A+   QP +
Sbjct:  188 TIYTRMQVKPSTQPIIVVLPLCHSDDTESARASRKQYRDTLYSVLFD-MNVPAVCSVDQAVLALYAAKRTSGIVVNIGFNATSIVPIFQGRVMHEIGVETVGQGALKLTGFLKELMQQRNITFESL---YTVRTIKEKLCYVAADYE-----AEKRKDTQASCEVDGEGWFTLSEERFKTAEILFQPQI 367          
BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP6_DROME (Actin-like protein 13E OS=Drosophila melanogaster GN=Actr13E PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.161e-13
Identity = 51/197 (25.89%), Postives = 95/197 (48.22%), Query Frame = 3
Query:   51 EHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLY-----ASGRTTG-----IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSS---SVEKNYELPDGQIITIGAER 599
            + G + NW   + +W + F  + +  + E   +++TE  +N ++ +E   +I+FE + V  +Y    A L+ +     +  RTT      I++D G   +H VP   G  +   I R+D+ G+ LT+ L ++++ R        E  +V  +KE + +VA D++Q ++   S      V  +Y LPD   +  G  R
Sbjct:   64 QRGYLLNWHTQKTVWDYIFSKDGIGCSLENRNIVITEPQMNFQSIQEATLEILFEEYKVDGVYKTTAADLAAFNYVADSEERTTMESLNCIIIDVGYSFTHVVPFVLGRRVLQGIRRIDMGGKALTNQLKELISYR--HLNVMDESHVVNQIKEDVCFVAEDFKQAMQVHYSEEKRREVTVDYVLPDFTTVKRGYVR 258          
The following BLAST results are available for this feature:
BLAST of CX294831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 471
Match NameE-valueIdentityDescription
ARP5_YEAST2.501e-1427.27Actin-related protein 5 OS=Saccharomyces cerevisia... [more]
ARP42_SCHPO3.267e-1423.45SWI/SNF and RSC complexes subunit arp42 OS=Schizos... [more]
ARP6_CRYNE4.267e-1428.65Actin-like protein ARP6 OS=Cryptococcus neoformans... [more]
ARP4_USTMA4.267e-1431.25Actin-related protein 4 OS=Ustilago maydis GN=ARP4... [more]
ARP6_MOUSE7.278e-1427.23Actin-related protein 6 OS=Mus musculus GN=Actr6 P... [more]
ARP6_HUMAN7.278e-1427.23Actin-related protein 6 OS=Homo sapiens GN=ACTR6 P... [more]
ARP5_CHICK2.118e-1327.47Actin-related protein 5 OS=Gallus gallus GN=ACTR5 ... [more]
ARP8_ORYSJ6.161e-1329.63Actin-related protein 8 OS=Oryza sativa subsp. jap... [more]
ARP8_ORYSI6.161e-1329.63Actin-related protein 8 OS=Oryza sativa subsp. ind... [more]
ARP6_DROME6.161e-1325.89Actin-like protein 13E OS=Drosophila melanogaster ... [more]

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Properties
Property NameValue
Genbank descriptionC05056E02SK PhIFruit1 Citrus clementina cDNA clone C05056E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294831 ID=CX294831; Name=CX294831; organism=Citrus clementina; type=EST; length=662bp
CTCGTGCCGAATTCGGCACGAGGGGTATTCTTACTTTGAAATACCCAATT
GAGCACGGTATTGTAAGCAACTGGGATGATATGGAAAAGATCTGGCATCA
TACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCAGTGCTTC
TCACTGAGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAGATGACCCAA
ATTATGTTTGAAACTTTCAATGTGCCAGCCATGTACGTTGCCATCCAGGC
TGTTCTATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTGGATT
CTGGTGATGGTGTGTCTCATACTGTACCAATTTATGAGGGATATGCCCTT
CCTCATGCCATTCTTCGTTTGGACTTGGCTGGTCGTGATCTCACTGATGC
ATTGATGAAGATTCTTACTGAGAGAGGTTACATGTTTACCACCACAGCCG
AACGGGAAATTGTCCGTGACATGAAGGAGAAGCTTGCTTATGTTGCCCTA
GACTATGAGCAAGAACTTGAGACTGCCAAGAGCAGCTCATCTGTTGAGAA
GAACTATGAGCTGCCTGATGGCCAGATCATCACCATTGGAGCTGAAAGAT
TCGTTGCCCAGAGTTCTGTTCAGCCATCTCTCATCGAATGGAGCTGCTGT
ATCATGAACTAC
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