CX294831

Overview
NameCX294831
Unique NameCX294831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX294831 vs. ExPASy Swiss-Prot
Match: ARP6_CAEEL (Actin-like protein C08B11.6 OS=Caenorhabditis elegans GN=C08B11.6 PE=2 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 43/182 (23.63%), Postives = 87/182 (47.80%), Query Frame = 3 
Query:   45 PIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTT----GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKS---SSSVEKNYELPD 569
            PIE G V NWD  ++IW  TF   + V      + LT+      A  +  ++I+F+ F    ++    + L    S +       +V+DSG   +       G  +  +++R+D+ G+ LT+ L   ++ R      + E  ++ + KE L +V+ ++++ ++ A++    ++  K Y +PD
Sbjct:   62 PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGFTEVHKTSASTLVAKHSNKINNEKCAVVVDSGFSWTTVASFVNGMLIQDSVIRIDVGGKALTNKLKDWVSYR--QLNVSEETYVINECKEDLCFVSQNFDESMKEARNRFQENTTMKRYIMPD 240
The following BLAST results are available for this feature:
BLAST of CX294831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 471
Match NameE-valueIdentityDescription
ARP6_CAEEL9.836e-1123.63Actin-like protein C08B11.6 OS=Caenorhabditis eleg... [more]

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Properties
Property NameValue
Genbank descriptionC05056E02SK PhIFruit1 Citrus clementina cDNA clone C05056E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294831 ID=CX294831; Name=CX294831; organism=Citrus clementina; type=EST; length=662bp
CTCGTGCCGAATTCGGCACGAGGGGTATTCTTACTTTGAAATACCCAATT
GAGCACGGTATTGTAAGCAACTGGGATGATATGGAAAAGATCTGGCATCA
TACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCAGTGCTTC
TCACTGAGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAGATGACCCAA
ATTATGTTTGAAACTTTCAATGTGCCAGCCATGTACGTTGCCATCCAGGC
TGTTCTATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTGGATT
CTGGTGATGGTGTGTCTCATACTGTACCAATTTATGAGGGATATGCCCTT
CCTCATGCCATTCTTCGTTTGGACTTGGCTGGTCGTGATCTCACTGATGC
ATTGATGAAGATTCTTACTGAGAGAGGTTACATGTTTACCACCACAGCCG
AACGGGAAATTGTCCGTGACATGAAGGAGAAGCTTGCTTATGTTGCCCTA
GACTATGAGCAAGAACTTGAGACTGCCAAGAGCAGCTCATCTGTTGAGAA
GAACTATGAGCTGCCTGATGGCCAGATCATCACCATTGGAGCTGAAAGAT
TCGTTGCCCAGAGTTCTGTTCAGCCATCTCTCATCGAATGGAGCTGCTGT
ATCATGAACTAC
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