CX294833
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_CYAP4 (50S ribosomal protein L6 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplF PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.537e-31 Identity = 73/157 (46.50%), Postives = 96/157 (61.15%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENT------------RITVSGYDKSAIGQFAA 619 SRIGK+PI +P V +T+ G +KVKGP GELS V P EV V +E+S L V + ++R A Q HGL RTL NMV GV++GF K +Q+VGVGYR + G L ++ G+SHPV + +P GI V V++ V G DK A+G AA Sbjct: 2 SRIGKRPIPIPDKVAVTIDGSTVKVKGPKGELSQVLPPEVVVVQENSSLLVNRRDDSRPARQRHGLSRTLVANMVKGVTEGFRKNMQIVGVGYRLQVTGNKLAITAGYSHPVEIDLPKGISVEVDQKAVPIANSKSQQGFNFGVIGIDKQAVGDVAA 158
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_CLOD6 (50S ribosomal protein L6 OS=Clostridium difficile (strain 630) GN=rplF PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.537e-31 Identity = 67/146 (45.89%), Postives = 96/146 (65.75%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLG-GQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIG +PI +P+ V +T+ G + VKGP G L+ E+ + +E++ + V + + ++ +HGL RTL DNMVVGV+ GFEKKL++ GVGYRA +G+ LV++LGFSHPV M P+GI V T + V G DK +G +AA Sbjct: 2 SRIGVKPIIIPAGVEVTIAEGNLVTVKGPKGTLTKQLSAELNIKKEENTIMVERPTDNKKHRSLHGLTRTLLDNMVVGVNTGFEKKLELKGVGYRAQKQGKKLVMNLGFSHPVEMEDPEGITVEAPNQTELIVKGIDKQLVGNYAA 147
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_CAUSK (50S ribosomal protein L6 OS=Caulobacter sp. (strain K31) GN=rplF PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.537e-31 Identity = 69/145 (47.59%), Postives = 95/145 (65.52%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+ + +PS V ITL GQ + VKGP G+LS E+ + +E S L + +++RA M GL RTL NMV GV+ GFE+ L++VGVGYRAA++G L + LGFSH V + P G+ V + T I ++G DK A+G+ AA Sbjct: 2 SRIGKKAVAIPSGVNITLDGQTVTVKGPKGQLSWTIAEEITISQEGSDLLLVARDDSKRAKSMWGLSRTLVANMVQGVTTGFEETLELVGVGYRAAMKGDALSIQLGFSHDVNVEAPAGVTFAVPKQTEIKIAGADKQAVGEIAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RK6_CYAPA (50S ribosomal protein L6, cyanelle OS=Cyanophora paradoxa GN=rpl6 PE=3 SV=2) HSP 1 Score: 135.961 bits (341), Expect = 1.537e-31 Identity = 68/145 (46.90%), Postives = 98/145 (67.59%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+ I +PS VT+++ Q VKGP GELS P ++V +++ L V + E+ A ++HGL RTL N+V GV +GFE++L++ GVGYRA ++G+ LVL++GFSHPV + P I + VE NT I + G DK +G+ AA Sbjct: 2 SRIGKRLINIPSQVTVSIKDQVFSVKGPKGELSKQIPYGIQVVQQNDHLVVERVAESLLARKLHGLCRTLVSNLVQGVFQGFERRLEIQGVGYRAQMDGKKLVLNIGFSHPVVIEPPTEIQLQVENNTNIIIKGIDKELVGKLAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_XANP2 (50S ribosomal protein L6 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplF PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.008e-31 Identity = 69/145 (47.59%), Postives = 95/145 (65.52%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 S+IGK P+ +P+ VT +L GQ +KVKGP G L + E+ E S L+V ET R M G+ RTL N+V GV+KGFEKKL++ GVGY+AA++G+ L LSLG+SH V IP+GI + + T + +SG D+ +GQ AA Sbjct: 2 SKIGKLPVAIPAGVTASLDGQTVKVKGPKGALEVTLVEEIAAKIEGSELKVSMNGETTRHKAMWGMSRTLVANLVEGVTKGFEKKLEITGVGYKAAVQGKNLNLSLGYSHDVIYAIPEGIQIVTPKPTEVVISGIDRQKVGQVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_GEOLS (50S ribosomal protein L6 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplF PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.008e-31 Identity = 72/145 (49.66%), Postives = 93/145 (64.14%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK PIEVP VT+T L VKGP GEL EV V ED + V + + ++ HGL RTL +NMVVGV+ G++ L++ GVGYRA ++G LVLSLG+SHPV +P GI V V++ T++ V G DK +GQ AA Sbjct: 2 SRIGKLPIEVPKGVTVTFVDSVLTVKGPKGELCRTIMPEVSVAVEDGKISVTRPDDAIKSRSAHGLTRTLVNNMVVGVTAGYQTDLEINGVGYRAEVKGAELVLSLGYSHPVVFPLPSGITVEVDKMTKLAVKGIDKELVGQTAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_STAHJ (50S ribosomal protein L6 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rplF PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.622e-31 Identity = 65/146 (44.52%), Postives = 97/146 (66.44%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622 SR+GK+ I++PS+VT+T G VKGP GEL+ + + +E++ + V + E++ +HG R L +NMV GVS+GFEK L++VGVGYRA ++G LVL++G+SHPV + DGI VE+NT + VSG K +G A++ Sbjct: 2 SRVGKKIIDIPSDVTVTFDGHTATVKGPKGELTRTFNERMTFKQEENTIEVVRPTESKEDRTVHGTTRALLNNMVQGVSQGFEKTLELVGVGYRAQMQGSDLVLNVGYSHPVEIKAEDGITFAVEKNTTVRVSGVSKEQVGAIASN 147
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_NITOC (50S ribosomal protein L6 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rplF PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.622e-31 Identity = 69/147 (46.94%), Postives = 93/147 (63.27%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQ-DLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622 SRI P+ +P V +TL G D+KVKG G L+ ++V ++ LR +R N + G R L +NMV GVS+GFE++LQ+VGVGYRA L+G+ LVLSLG+SHPV T P+G+ + V T I V GYDK +GQ AA+ Sbjct: 2 SRIADNPVSIPKGVEVTLSGDNDIKVKGAKGSLAFAIHPLIQVVQDGETLRFSAKSTDKRVNALRGTTRALINNMVQGVSQGFERRLQLVGVGYRAQLQGRKLVLSLGYSHPVEFTAPEGLTIEVPSPTEIIVKGYDKQQVGQAAAN 148
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_METNO (50S ribosomal protein L6 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplF PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.622e-31 Identity = 69/145 (47.59%), Postives = 93/145 (64.14%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SR+GK+P+ VP+ VT T+ GQ +KVKG GEL P +V V E+ + V+ +T+ A + GL R N+V GV+KGFEKKL++ GVGYRAA+ G+VL LSLG+SH + IP GI + I V+G DK +GQ AA Sbjct: 2 SRVGKKPVPVPAGVTATVDGQTVKVKGSKGELQFRVPDQVAVTHENGAISVQPRSQTKEARALWGLSRAQVANLVEGVTKGFEKKLEINGVGYRAAVAGKVLKLSLGYSHDIEYEIPAGITITTPRPVEIIVAGIDKQRVGQIAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_IDILO (50S ribosomal protein L6 OS=Idiomarina loihiensis GN=rplF PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.622e-31 Identity = 67/146 (45.89%), Postives = 93/146 (63.70%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622 SR+ K PIE+P+ V +TL GQ++ +KG G LS V V++ +++S LR + G R L NMVVGV+KGFE+KLQ++GVGYRA +G+ L L+LGFSHPV IP+GI ++ T + V G DK +GQ AA+ Sbjct: 2 SRVAKAPIEIPAGVEVTLNGQEVTIKGAQGSLSRVVNDAVELVKDESELRTNAREGVANSTAQAGTARALLQNMVVGVTKGFERKLQLIGVGYRAQAQGKKLNLTLGFSHPVEFEIPEGITIDTPTQTEVVVKGADKQLVGQVAAN 147 The following BLAST results are available for this feature:
BLAST of CX294833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294833 ID=CX294833; Name=CX294833; organism=Citrus clementina; type=EST; length=623bpback to top |