CX294833

Overview
NameCX294833
Unique NameCX294833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_CYAP4 (50S ribosomal protein L6 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.537e-31
Identity = 73/157 (46.50%), Postives = 96/157 (61.15%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENT------------RITVSGYDKSAIGQFAA 619
            SRIGK+PI +P  V +T+ G  +KVKGP GELS V P EV V +E+S L V +  ++R A Q HGL RTL  NMV GV++GF K +Q+VGVGYR  + G  L ++ G+SHPV + +P GI V V++                 V G DK A+G  AA
Sbjct:    2 SRIGKRPIPIPDKVAVTIDGSTVKVKGPKGELSQVLPPEVVVVQENSSLLVNRRDDSRPARQRHGLSRTLVANMVKGVTEGFRKNMQIVGVGYRLQVTGNKLAITAGYSHPVEIDLPKGISVEVDQKAVPIANSKSQQGFNFGVIGIDKQAVGDVAA 158          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_CLOD6 (50S ribosomal protein L6 OS=Clostridium difficile (strain 630) GN=rplF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.537e-31
Identity = 67/146 (45.89%), Postives = 96/146 (65.75%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLG-GQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIG +PI +P+ V +T+  G  + VKGP G L+     E+ + +E++ + V +  + ++   +HGL RTL DNMVVGV+ GFEKKL++ GVGYRA  +G+ LV++LGFSHPV M  P+GI V     T + V G DK  +G +AA
Sbjct:    2 SRIGVKPIIIPAGVEVTIAEGNLVTVKGPKGTLTKQLSAELNIKKEENTIMVERPTDNKKHRSLHGLTRTLLDNMVVGVNTGFEKKLELKGVGYRAQKQGKKLVMNLGFSHPVEMEDPEGITVEAPNQTELIVKGIDKQLVGNYAA 147          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_CAUSK (50S ribosomal protein L6 OS=Caulobacter sp. (strain K31) GN=rplF PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.537e-31
Identity = 69/145 (47.59%), Postives = 95/145 (65.52%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+ + +PS V ITL GQ + VKGP G+LS     E+ + +E S L +    +++RA  M GL RTL  NMV GV+ GFE+ L++VGVGYRAA++G  L + LGFSH V +  P G+   V + T I ++G DK A+G+ AA
Sbjct:    2 SRIGKKAVAIPSGVNITLDGQTVTVKGPKGQLSWTIAEEITISQEGSDLLLVARDDSKRAKSMWGLSRTLVANMVQGVTTGFEETLELVGVGYRAAMKGDALSIQLGFSHDVNVEAPAGVTFAVPKQTEIKIAGADKQAVGEIAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RK6_CYAPA (50S ribosomal protein L6, cyanelle OS=Cyanophora paradoxa GN=rpl6 PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.537e-31
Identity = 68/145 (46.90%), Postives = 98/145 (67.59%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+ I +PS VT+++  Q   VKGP GELS   P  ++V +++  L V +  E+  A ++HGL RTL  N+V GV +GFE++L++ GVGYRA ++G+ LVL++GFSHPV +  P  I + VE NT I + G DK  +G+ AA
Sbjct:    2 SRIGKRLINIPSQVTVSIKDQVFSVKGPKGELSKQIPYGIQVVQQNDHLVVERVAESLLARKLHGLCRTLVSNLVQGVFQGFERRLEIQGVGYRAQMDGKKLVLNIGFSHPVVIEPPTEIQLQVENNTNIIIKGIDKELVGKLAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_XANP2 (50S ribosomal protein L6 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplF PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.008e-31
Identity = 69/145 (47.59%), Postives = 95/145 (65.52%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            S+IGK P+ +P+ VT +L GQ +KVKGP G L +    E+    E S L+V    ET R   M G+ RTL  N+V GV+KGFEKKL++ GVGY+AA++G+ L LSLG+SH V   IP+GI +   + T + +SG D+  +GQ AA
Sbjct:    2 SKIGKLPVAIPAGVTASLDGQTVKVKGPKGALEVTLVEEIAAKIEGSELKVSMNGETTRHKAMWGMSRTLVANLVEGVTKGFEKKLEITGVGYKAAVQGKNLNLSLGYSHDVIYAIPEGIQIVTPKPTEVVISGIDRQKVGQVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_GEOLS (50S ribosomal protein L6 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplF PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.008e-31
Identity = 72/145 (49.66%), Postives = 93/145 (64.14%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK PIEVP  VT+T     L VKGP GEL      EV V  ED  + V +  +  ++   HGL RTL +NMVVGV+ G++  L++ GVGYRA ++G  LVLSLG+SHPV   +P GI V V++ T++ V G DK  +GQ AA
Sbjct:    2 SRIGKLPIEVPKGVTVTFVDSVLTVKGPKGELCRTIMPEVSVAVEDGKISVTRPDDAIKSRSAHGLTRTLVNNMVVGVTAGYQTDLEINGVGYRAEVKGAELVLSLGYSHPVVFPLPSGITVEVDKMTKLAVKGIDKELVGQTAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_STAHJ (50S ribosomal protein L6 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rplF PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.622e-31
Identity = 65/146 (44.52%), Postives = 97/146 (66.44%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622
            SR+GK+ I++PS+VT+T  G    VKGP GEL+  +   +   +E++ + V +  E++    +HG  R L +NMV GVS+GFEK L++VGVGYRA ++G  LVL++G+SHPV +   DGI   VE+NT + VSG  K  +G  A++
Sbjct:    2 SRVGKKIIDIPSDVTVTFDGHTATVKGPKGELTRTFNERMTFKQEENTIEVVRPTESKEDRTVHGTTRALLNNMVQGVSQGFEKTLELVGVGYRAQMQGSDLVLNVGYSHPVEIKAEDGITFAVEKNTTVRVSGVSKEQVGAIASN 147          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_NITOC (50S ribosomal protein L6 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rplF PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.622e-31
Identity = 69/147 (46.94%), Postives = 93/147 (63.27%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQ-DLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622
            SRI   P+ +P  V +TL G  D+KVKG  G L+      ++V ++   LR       +R N + G  R L +NMV GVS+GFE++LQ+VGVGYRA L+G+ LVLSLG+SHPV  T P+G+ + V   T I V GYDK  +GQ AA+
Sbjct:    2 SRIADNPVSIPKGVEVTLSGDNDIKVKGAKGSLAFAIHPLIQVVQDGETLRFSAKSTDKRVNALRGTTRALINNMVQGVSQGFERRLQLVGVGYRAQLQGRKLVLSLGYSHPVEFTAPEGLTIEVPSPTEIIVKGYDKQQVGQAAAN 148          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_METNO (50S ribosomal protein L6 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplF PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.622e-31
Identity = 69/145 (47.59%), Postives = 93/145 (64.14%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SR+GK+P+ VP+ VT T+ GQ +KVKG  GEL    P +V V  E+  + V+   +T+ A  + GL R    N+V GV+KGFEKKL++ GVGYRAA+ G+VL LSLG+SH +   IP GI +       I V+G DK  +GQ AA
Sbjct:    2 SRVGKKPVPVPAGVTATVDGQTVKVKGSKGELQFRVPDQVAVTHENGAISVQPRSQTKEARALWGLSRAQVANLVEGVTKGFEKKLEINGVGYRAAVAGKVLKLSLGYSHDIEYEIPAGITITTPRPVEIIVAGIDKQRVGQIAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_IDILO (50S ribosomal protein L6 OS=Idiomarina loihiensis GN=rplF PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.622e-31
Identity = 67/146 (45.89%), Postives = 93/146 (63.70%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622
            SR+ K PIE+P+ V +TL GQ++ +KG  G LS V    V++ +++S LR         +    G  R L  NMVVGV+KGFE+KLQ++GVGYRA  +G+ L L+LGFSHPV   IP+GI ++    T + V G DK  +GQ AA+
Sbjct:    2 SRVAKAPIEIPAGVEVTLNGQEVTIKGAQGSLSRVVNDAVELVKDESELRTNAREGVANSTAQAGTARALLQNMVVGVTKGFERKLQLIGVGYRAQAQGKKLNLTLGFSHPVEFEIPEGITIDTPTQTEVVVKGADKQLVGQVAAN 147          
The following BLAST results are available for this feature:
BLAST of CX294833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_CYAP41.537e-3146.5050S ribosomal protein L6 OS=Cyanothece sp. (strain... [more]
RL6_CLOD61.537e-3145.8950S ribosomal protein L6 OS=Clostridium difficile ... [more]
RL6_CAUSK1.537e-3147.5950S ribosomal protein L6 OS=Caulobacter sp. (strai... [more]
RK6_CYAPA1.537e-3146.9050S ribosomal protein L6, cyanelle OS=Cyanophora p... [more]
RL6_XANP22.008e-3147.5950S ribosomal protein L6 OS=Xanthobacter autotroph... [more]
RL6_GEOLS2.008e-3149.6650S ribosomal protein L6 OS=Geobacter lovleyi (str... [more]
RL6_STAHJ2.622e-3144.5250S ribosomal protein L6 OS=Staphylococcus haemoly... [more]
RL6_NITOC2.622e-3146.9450S ribosomal protein L6 OS=Nitrosococcus oceani (... [more]
RL6_METNO2.622e-3147.5950S ribosomal protein L6 OS=Methylobacterium nodul... [more]
RL6_IDILO2.622e-3145.8950S ribosomal protein L6 OS=Idiomarina loihiensis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05056E04SK PhIFruit1 Citrus clementina cDNA clone C05056E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294833 ID=CX294833; Name=CX294833; organism=Citrus clementina; type=EST; length=623bp
AGGCAGGTGTTAAAAGTTGATTGATGCTCAAAGCCGCTTAAGCGAAATGG
CTTCTTCTATCGCCTCTTCTTTCCATACCAGCAATTTGAAGTCCATATTT
TTTGGTGAGAGAAATGGATTCAGCATGTCTAATGTTCCTGTAAATCGTGT
TGGCTTTTCAAGGAAGACTATAGAATGTAAGGAATCAAGAATAGGAAAAC
AGCCTATAGAAGTGCCATCCAATGTGACAATCACATTAGGAGGTCAAGAT
CTAAAAGTAAAGGGTCCACTGGGAGAACTTTCACTTGTTTATCCACGAGA
AGTGAAGGTTGATAGGGAGGACTCATTCCTGAGGGTCAGAAAGACTGTAG
AGACAAGAAGGGCCAATCAAATGCACGGGCTTTTCAGGACACTGACTGAC
AACATGGTGGTTGGAGTATCGAAAGGGTTTGAGAAGAAGCTTCAAATGGT
TGGTGTTGGATATCGTGCTGCATTAGAAGGACAAGTCTTGGTATTGAGTC
TTGGGTTCTCGCATCCAGTTAGGATGACAATCCCAGATGGCATANAAGTG
AATGTGGAGGAAAACACCAGGATCACTGTTAGTGGATACGATAAAAGCGC
AATTGGTCAGTTTGCTGCTTCCA
back to top