CX294833

Overview
NameCX294833
Unique NameCX294833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_PROMT (50S ribosomal protein L6 OS=Prochlorococcus marinus (strain NATL2A) GN=rplF PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.097e-32
Identity = 68/145 (46.90%), Postives = 95/145 (65.52%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SR GK+PI +P  V +   G  + VKGP GEL    P  V + ++++F+ V+   E R++ +MHGL R+L  NMV GVS GF KKL++VGVG RA ++G+ LV+S G+SHPV +  P+GI   VE NT + V+G DK  +G  AA
Sbjct:    2 SRTGKKPISLPEKVDVKFEGLSITVKGPKGELKRTLPNGVSLSKDENFIFVKPINEKRQSREMHGLCRSLVANMVEGVSNGFTKKLEIVGVGSRAQVKGKTLVVSAGYSHPVEVVPPEGITFKVENNTNVIVTGPDKELVGNEAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_PROM1 (50S ribosomal protein L6 OS=Prochlorococcus marinus (strain NATL1A) GN=rplF PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.097e-32
Identity = 68/145 (46.90%), Postives = 95/145 (65.52%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SR GK+PI +P  V +   G  + VKGP GEL    P  V + ++++F+ V+   E R++ +MHGL R+L  NMV GVS GF KKL++VGVG RA ++G+ LV+S G+SHPV +  P+GI   VE NT + V+G DK  +G  AA
Sbjct:    2 SRTGKKPISLPEKVDVKFEGLSITVKGPKGELQRTLPNGVSLSKDENFIFVKPINEKRQSREMHGLCRSLVANMVEGVSNGFTKKLEIVGVGSRAQVKGKTLVVSAGYSHPVEVVPPEGITFKVENNTNVIVTGPDKELVGNEAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_MAGSM (50S ribosomal protein L6 OS=Magnetococcus sp. (strain MC-1) GN=rplF PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.097e-32
Identity = 69/145 (47.59%), Postives = 97/145 (66.90%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+P+ VP  V + + G  +  KG LGEL+  +   +   +E   + V  +   ++++ + GL RTL DNMVVGVS+GF K+L++ GVGYRAA++G+ L LSLGFSHPV   +P+G+   VE+NT ITV GYDK  +GQ  A
Sbjct:    2 SRIGKKPVVVPDGVDLKINGTVVTAKGKLGELTRQFHEAITFAQEGKEVNVAVSGTDKKSSSLWGLSRTLLDNMVVGVSQGFSKQLEIQGVGYRAAVKGRTLELSLGFSHPVNYELPNGLEATVEKNTLITVKGYDKEVLGQACA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_LISMO (50S ribosomal protein L6 OS=Listeria monocytogenes GN=rplF PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.097e-32
Identity = 64/146 (43.84%), Postives = 96/146 (65.75%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622
            SRIGK+ I +P+ VT+TL G    VKGP GEL   +  E+ +  E + + V +  + +    +HG  R + +NMVVGVS+G+EKKL+++GVGYRA  +G  LVL++G+SHPV    P G+ + V  NT++ V GY+K  +G+ AA+
Sbjct:    2 SRIGKKTIVIPAGVTVTLNGSTATVKGPKGELVKEFNPEITIKIEGNEINVSRPTDNKNHRALHGTTRAILNNMVVGVSEGYEKKLELIGVGYRAQKQGDKLVLNVGYSHPVEFVAPKGVDIEVPANTQVIVKGYNKEHVGELAAN 147          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_LISMH (50S ribosomal protein L6 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rplF PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.097e-32
Identity = 64/146 (43.84%), Postives = 96/146 (65.75%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622
            SRIGK+ I +P+ VT+TL G    VKGP GEL   +  E+ +  E + + V +  + +    +HG  R + +NMVVGVS+G+EKKL+++GVGYRA  +G  LVL++G+SHPV    P G+ + V  NT++ V GY+K  +G+ AA+
Sbjct:    2 SRIGKKTIVIPAGVTVTLNGSTATVKGPKGELVKEFNPEITIKIEGNEINVSRPTDNKNHRALHGTTRAILNNMVVGVSEGYEKKLELIGVGYRAQKQGDKLVLNVGYSHPVEFVAPKGVDIEVPANTQVIVKGYNKEHVGELAAN 147          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_CORDI (50S ribosomal protein L6 OS=Corynebacterium diphtheriae GN=rplF PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.097e-32
Identity = 67/145 (46.21%), Postives = 97/145 (66.90%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SR+GK PI +PS V + + GQ ++VKGP G L L  P  +    ED  + V +  + R+   +HGL R+L +NMVVGV++G+  K+++ GVGYR AL+G+ L  SLG+SHPV +  P+GI   V+ NT+++VSG DK  +GQ AA
Sbjct:    2 SRVGKAPIAIPSGVDVKIDGQHVEVKGPKGTLDLTIPEPIVASIEDGQISVVRPDDHRKNRSLHGLSRSLVNNMVVGVTEGYTIKMEIFGVGYRVALKGKNLEFSLGYSHPVLIEAPEGITFAVDGNTKLSVSGIDKQKVGQIAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_METEP (50S ribosomal protein L6 OS=Methylobacterium extorquens (strain PA1) GN=rplF PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.045e-32
Identity = 70/145 (48.28%), Postives = 96/145 (66.21%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SR+GK+P+ VPS VT T+ GQ +KVKG  GEL  V P +V V+ +D  + V+   ++++A  + G  R    N+V GVSKGFEKKL++ GVGYRAA+ G+ L LSLG+SH +   IP GI +   + T I VSG D+  +GQ AA
Sbjct:    2 SRVGKKPVPVPSGVTATVTGQTVKVKGSKGELQFVVPSQVVVEFKDGAVSVQPKDQSKQARSLWGTSRAQVANLVEGVSKGFEKKLEITGVGYRAAMAGKALKLSLGYSHDIEYEIPAGITIVTPKPTEIVVSGIDRQRVGQVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_METC4 (50S ribosomal protein L6 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rplF PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.045e-32
Identity = 70/145 (48.28%), Postives = 96/145 (66.21%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SR+GK+P+ VPS VT T+ GQ +KVKG  GEL  V P +V V+ +D  + V+   ++++A  + G  R    N+V GVSKGFEKKL++ GVGYRAA+ G+ L LSLG+SH +   IP GI +   + T I VSG D+  +GQ AA
Sbjct:    2 SRVGKKPVPVPSGVTATVTGQTVKVKGSKGELQFVVPSQVVVEFKDGAVSVQPKDQSKQARSLWGTSRAQVANLVEGVSKGFEKKLEITGVGYRAAMAGKALKLSLGYSHDIEYEIPAGITIVTPKPTEIVVSGIDRQRVGQVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_DICT6 (50S ribosomal protein L6 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplF PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.045e-32
Identity = 65/146 (44.52%), Postives = 100/146 (68.49%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITL-GGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+P+ +P NV + +  G  + VKGPLG+L   +   + + + D+ + V +  + +    +HGL R L +NMV+GV++GFEK+L++ G GYRA ++G  L+L +GFSHPV + IP G+ V V++NT+I+V G DK  +GQFAA
Sbjct:    2 SRIGKKPVPIPQNVQVEIKDGNCVLVKGPLGQLEKTFSPLLTIKKVDNQIVVERPNDEKFVKALHGLTRALINNMVLGVTQGFEKRLELQGTGYRARVQGNKLILEVGFSHPVELEIPTGLTVTVQDNTKISVKGIDKELVGQFAA 147          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_MOOTA (50S ribosomal protein L6 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplF PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.284e-32
Identity = 65/145 (44.83%), Postives = 96/145 (66.21%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+P+++P+ V + + G  + VKGP G+L+  +P E+ + RE   L+V +  + +    +HGL R L  NMV GV++GFEK L++VGVGYRAA +G  LVLS+G+SHPV M   +G+ + V    ++ V G DK A+G  AA
Sbjct:    2 SRIGKKPVKIPAGVEVNIEGNTVTVKGPKGKLTRQFPAEITISREGEELQVSRPSDAKPHRALHGLSRALLQNMVDGVTRGFEKGLELVGVGYRAAKQGNKLVLSVGYSHPVEMVPGEGLEIEVPAPNKVIVKGIDKEAVGALAA 146          
The following BLAST results are available for this feature:
BLAST of CX294833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_PROMT3.097e-3246.9050S ribosomal protein L6 OS=Prochlorococcus marinu... [more]
RL6_PROM13.097e-3246.9050S ribosomal protein L6 OS=Prochlorococcus marinu... [more]
RL6_MAGSM3.097e-3247.5950S ribosomal protein L6 OS=Magnetococcus sp. (str... [more]
RL6_LISMO3.097e-3243.8450S ribosomal protein L6 OS=Listeria monocytogenes... [more]
RL6_LISMH3.097e-3243.8450S ribosomal protein L6 OS=Listeria monocytogenes... [more]
RL6_CORDI3.097e-3246.2150S ribosomal protein L6 OS=Corynebacterium diphth... [more]
RL6_METEP4.045e-3248.2850S ribosomal protein L6 OS=Methylobacterium extor... [more]
RL6_METC44.045e-3248.2850S ribosomal protein L6 OS=Methylobacterium chlor... [more]
RL6_DICT64.045e-3244.5250S ribosomal protein L6 OS=Dictyoglomus thermophi... [more]
RL6_MOOTA5.284e-3244.8350S ribosomal protein L6 OS=Moorella thermoacetica... [more]

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Properties
Property NameValue
Genbank descriptionC05056E04SK PhIFruit1 Citrus clementina cDNA clone C05056E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294833 ID=CX294833; Name=CX294833; organism=Citrus clementina; type=EST; length=623bp
AGGCAGGTGTTAAAAGTTGATTGATGCTCAAAGCCGCTTAAGCGAAATGG
CTTCTTCTATCGCCTCTTCTTTCCATACCAGCAATTTGAAGTCCATATTT
TTTGGTGAGAGAAATGGATTCAGCATGTCTAATGTTCCTGTAAATCGTGT
TGGCTTTTCAAGGAAGACTATAGAATGTAAGGAATCAAGAATAGGAAAAC
AGCCTATAGAAGTGCCATCCAATGTGACAATCACATTAGGAGGTCAAGAT
CTAAAAGTAAAGGGTCCACTGGGAGAACTTTCACTTGTTTATCCACGAGA
AGTGAAGGTTGATAGGGAGGACTCATTCCTGAGGGTCAGAAAGACTGTAG
AGACAAGAAGGGCCAATCAAATGCACGGGCTTTTCAGGACACTGACTGAC
AACATGGTGGTTGGAGTATCGAAAGGGTTTGAGAAGAAGCTTCAAATGGT
TGGTGTTGGATATCGTGCTGCATTAGAAGGACAAGTCTTGGTATTGAGTC
TTGGGTTCTCGCATCCAGTTAGGATGACAATCCCAGATGGCATANAAGTG
AATGTGGAGGAAAACACCAGGATCACTGTTAGTGGATACGATAAAAGCGC
AATTGGTCAGTTTGCTGCTTCCA
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