CX294833
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_PROMT (50S ribosomal protein L6 OS=Prochlorococcus marinus (strain NATL2A) GN=rplF PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.097e-32 Identity = 68/145 (46.90%), Postives = 95/145 (65.52%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SR GK+PI +P V + G + VKGP GEL P V + ++++F+ V+ E R++ +MHGL R+L NMV GVS GF KKL++VGVG RA ++G+ LV+S G+SHPV + P+GI VE NT + V+G DK +G AA Sbjct: 2 SRTGKKPISLPEKVDVKFEGLSITVKGPKGELKRTLPNGVSLSKDENFIFVKPINEKRQSREMHGLCRSLVANMVEGVSNGFTKKLEIVGVGSRAQVKGKTLVVSAGYSHPVEVVPPEGITFKVENNTNVIVTGPDKELVGNEAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_PROM1 (50S ribosomal protein L6 OS=Prochlorococcus marinus (strain NATL1A) GN=rplF PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.097e-32 Identity = 68/145 (46.90%), Postives = 95/145 (65.52%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SR GK+PI +P V + G + VKGP GEL P V + ++++F+ V+ E R++ +MHGL R+L NMV GVS GF KKL++VGVG RA ++G+ LV+S G+SHPV + P+GI VE NT + V+G DK +G AA Sbjct: 2 SRTGKKPISLPEKVDVKFEGLSITVKGPKGELQRTLPNGVSLSKDENFIFVKPINEKRQSREMHGLCRSLVANMVEGVSNGFTKKLEIVGVGSRAQVKGKTLVVSAGYSHPVEVVPPEGITFKVENNTNVIVTGPDKELVGNEAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_MAGSM (50S ribosomal protein L6 OS=Magnetococcus sp. (strain MC-1) GN=rplF PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.097e-32 Identity = 69/145 (47.59%), Postives = 97/145 (66.90%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+P+ VP V + + G + KG LGEL+ + + +E + V + ++++ + GL RTL DNMVVGVS+GF K+L++ GVGYRAA++G+ L LSLGFSHPV +P+G+ VE+NT ITV GYDK +GQ A Sbjct: 2 SRIGKKPVVVPDGVDLKINGTVVTAKGKLGELTRQFHEAITFAQEGKEVNVAVSGTDKKSSSLWGLSRTLLDNMVVGVSQGFSKQLEIQGVGYRAAVKGRTLELSLGFSHPVNYELPNGLEATVEKNTLITVKGYDKEVLGQACA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_LISMO (50S ribosomal protein L6 OS=Listeria monocytogenes GN=rplF PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.097e-32 Identity = 64/146 (43.84%), Postives = 96/146 (65.75%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622 SRIGK+ I +P+ VT+TL G VKGP GEL + E+ + E + + V + + + +HG R + +NMVVGVS+G+EKKL+++GVGYRA +G LVL++G+SHPV P G+ + V NT++ V GY+K +G+ AA+ Sbjct: 2 SRIGKKTIVIPAGVTVTLNGSTATVKGPKGELVKEFNPEITIKIEGNEINVSRPTDNKNHRALHGTTRAILNNMVVGVSEGYEKKLELIGVGYRAQKQGDKLVLNVGYSHPVEFVAPKGVDIEVPANTQVIVKGYNKEHVGELAAN 147
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_LISMH (50S ribosomal protein L6 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rplF PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.097e-32 Identity = 64/146 (43.84%), Postives = 96/146 (65.75%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622 SRIGK+ I +P+ VT+TL G VKGP GEL + E+ + E + + V + + + +HG R + +NMVVGVS+G+EKKL+++GVGYRA +G LVL++G+SHPV P G+ + V NT++ V GY+K +G+ AA+ Sbjct: 2 SRIGKKTIVIPAGVTVTLNGSTATVKGPKGELVKEFNPEITIKIEGNEINVSRPTDNKNHRALHGTTRAILNNMVVGVSEGYEKKLELIGVGYRAQKQGDKLVLNVGYSHPVEFVAPKGVDIEVPANTQVIVKGYNKEHVGELAAN 147
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_CORDI (50S ribosomal protein L6 OS=Corynebacterium diphtheriae GN=rplF PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.097e-32 Identity = 67/145 (46.21%), Postives = 97/145 (66.90%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SR+GK PI +PS V + + GQ ++VKGP G L L P + ED + V + + R+ +HGL R+L +NMVVGV++G+ K+++ GVGYR AL+G+ L SLG+SHPV + P+GI V+ NT+++VSG DK +GQ AA Sbjct: 2 SRVGKAPIAIPSGVDVKIDGQHVEVKGPKGTLDLTIPEPIVASIEDGQISVVRPDDHRKNRSLHGLSRSLVNNMVVGVTEGYTIKMEIFGVGYRVALKGKNLEFSLGYSHPVLIEAPEGITFAVDGNTKLSVSGIDKQKVGQIAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_METEP (50S ribosomal protein L6 OS=Methylobacterium extorquens (strain PA1) GN=rplF PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.045e-32 Identity = 70/145 (48.28%), Postives = 96/145 (66.21%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SR+GK+P+ VPS VT T+ GQ +KVKG GEL V P +V V+ +D + V+ ++++A + G R N+V GVSKGFEKKL++ GVGYRAA+ G+ L LSLG+SH + IP GI + + T I VSG D+ +GQ AA Sbjct: 2 SRVGKKPVPVPSGVTATVTGQTVKVKGSKGELQFVVPSQVVVEFKDGAVSVQPKDQSKQARSLWGTSRAQVANLVEGVSKGFEKKLEITGVGYRAAMAGKALKLSLGYSHDIEYEIPAGITIVTPKPTEIVVSGIDRQRVGQVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_METC4 (50S ribosomal protein L6 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rplF PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.045e-32 Identity = 70/145 (48.28%), Postives = 96/145 (66.21%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SR+GK+P+ VPS VT T+ GQ +KVKG GEL V P +V V+ +D + V+ ++++A + G R N+V GVSKGFEKKL++ GVGYRAA+ G+ L LSLG+SH + IP GI + + T I VSG D+ +GQ AA Sbjct: 2 SRVGKKPVPVPSGVTATVTGQTVKVKGSKGELQFVVPSQVVVEFKDGAVSVQPKDQSKQARSLWGTSRAQVANLVEGVSKGFEKKLEITGVGYRAAMAGKALKLSLGYSHDIEYEIPAGITIVTPKPTEIVVSGIDRQRVGQVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_DICT6 (50S ribosomal protein L6 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplF PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.045e-32 Identity = 65/146 (44.52%), Postives = 100/146 (68.49%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITL-GGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+P+ +P NV + + G + VKGPLG+L + + + + D+ + V + + + +HGL R L +NMV+GV++GFEK+L++ G GYRA ++G L+L +GFSHPV + IP G+ V V++NT+I+V G DK +GQFAA Sbjct: 2 SRIGKKPVPIPQNVQVEIKDGNCVLVKGPLGQLEKTFSPLLTIKKVDNQIVVERPNDEKFVKALHGLTRALINNMVLGVTQGFEKRLELQGTGYRARVQGNKLILEVGFSHPVELEIPTGLTVTVQDNTKISVKGIDKELVGQFAA 147
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_MOOTA (50S ribosomal protein L6 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplF PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 5.284e-32 Identity = 65/145 (44.83%), Postives = 96/145 (66.21%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+P+++P+ V + + G + VKGP G+L+ +P E+ + RE L+V + + + +HGL R L NMV GV++GFEK L++VGVGYRAA +G LVLS+G+SHPV M +G+ + V ++ V G DK A+G AA Sbjct: 2 SRIGKKPVKIPAGVEVNIEGNTVTVKGPKGKLTRQFPAEITISREGEELQVSRPSDAKPHRALHGLSRALLQNMVDGVTRGFEKGLELVGVGYRAAKQGNKLVLSVGYSHPVEMVPGEGLEIEVPAPNKVIVKGIDKEAVGALAA 146 The following BLAST results are available for this feature:
BLAST of CX294833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX294833 ID=CX294833; Name=CX294833; organism=Citrus clementina; type=EST; length=623bpback to top |