CX294850

Overview
NameCX294850
Unique NameCX294850
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294850 vs. ExPASy Swiss-Prot
Match: PAL4A_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4A OS=Homo sapiens GN=PPIAL4A PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.840e-46
Identity = 94/167 (56.29%), Postives = 109/167 (65.27%), Query Frame = 3
Query:   45 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMENVGSESGRTSHTVVIED 545
            M N  +FFDI +     GR+ ++ FAD  PKTAENFRAL TGEKG         YKGS FHRIIP FMCQ            +SIYG KF DEN   KHTG GILSMANAGPNTNGSQFFICT KT WLDGKHV FGKV +  ++++ ME+ G  + +TS  + I D
Sbjct:    1 MVNSVIFFDITVDGKPLGRISIKQFADKIPKTAENFRALSTGEKGF-------RYKGSCFHRIIPGFMCQGGDFTHPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIAD 160          
BLAST of CX294850 vs. ExPASy Swiss-Prot
Match: PPIA2_RHIOR (Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus oryzae GN=cyp1 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.327e-46
Identity = 93/162 (57.41%), Postives = 108/162 (66.67%), Query Frame = 3
Query:   60 VFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMENVGSESGRTSHTVVIED 545
            V+FDI I     GR+  +LF DV PKTA+NFRALCTGE+G G       YKGS FHR+IP FM Q            +SIYG KFADENFK+KH+ PG+LSMANAGPNTNGSQFFI T    WLDG HVVFGKV     ++  +E++GS SG     VVIED
Sbjct:    3 VYFDISIDGKPAGRIEFQLFEDVVPKTAKNFRALCTGEQGFG-------YKGSKFHRVIPQFMLQGGDFTRGDGTGGKSIYGEKFADENFKLKHSEPGLLSMANAGPNTNGSQFFITTVPCSWLDGAHVVFGKVTKNMELVSKIESLGSASGAVKAKVVIED 157          
BLAST of CX294850 vs. ExPASy Swiss-Prot
Match: CP20C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 8.264e-46
Identity = 92/152 (60.53%), Postives = 109/152 (71.71%), Query Frame = 3
Query:   42 KMTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMEN 497
            K+TN +V+FD+ IG    GR+VM LF +V PKT ENFRALCTGEK  G       YKGS+FHRII +FM Q             SIYG KF DENF +KHTGPGILSMANAGPNTNGSQFFICT KT WLD KHVVFG+V++G  +++ +E+
Sbjct:   92 KVTN-KVYFDVEIGGEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYG-------YKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGAKFEDENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGMKLVRTLES 235          
BLAST of CX294850 vs. ExPASy Swiss-Prot
Match: PAL4B_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4B OS=Homo sapiens GN=PPIAL4B PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.404e-45
Identity = 94/167 (56.29%), Postives = 108/167 (64.67%), Query Frame = 3
Query:   45 MTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMENVGSESGRTSHTVVIED 545
            M N  VFFDI +     GR+ ++LFAD   KTAENFRAL TGEKG         YKGS FHRIIP FMCQ            +SIYG KF DEN   KHTG GILSMANAGPNTNGSQFFIC  KT WLDGKHV FGKV +  ++++ ME+ G  + +TS  + I D
Sbjct:    1 MVNSVVFFDITVDGKPLGRISIKLFADKILKTAENFRALSTGEKGF-------RYKGSCFHRIIPGFMCQGGDFTRHNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIAD 160          
BLAST of CX294850 vs. ExPASy Swiss-Prot
Match: CYPC_YEAST (Peptidyl-prolyl cis-trans isomerase C, mitochondrial OS=Saccharomyces cerevisiae GN=CPR3 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 9.137e-45
Identity = 93/177 (52.54%), Postives = 111/177 (62.71%), Query Frame = 3
Query:   15 QQKAFDWIEKMTNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMENVGSESGRTSHTVVIED 545
            Q + F         +VFFD  +     GR+  EL+ +V PKTAENFRALCTGEKG G       YKG  FHRIIP+FM Q            +SIYG KFADENF  KH   G+LSMANAGPNTNGSQFFI T   PWLDGKHVVFG+V  G  ++K +E+ G+ SG+    +VIE+
Sbjct:    9 QSRLFSNSASRLGKKVFFDPAVNGTKIGRIEFELYDNVVPKTAENFRALCTGEKGWG-------YKGVPFHRIIPDFMIQGGDTDLTNGFGGKSIYGSKFADENFVKKHDKAGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTKGMDIVKAIESYGTASGKPRAEIVIEE 178          
BLAST of CX294850 vs. ExPASy Swiss-Prot
Match: PPIH_CRYNE (Peptidyl-prolyl cis-trans isomerase H OS=Cryptococcus neoformans GN=CYP3 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.658e-44
Identity = 89/151 (58.94%), Postives = 104/151 (68.87%), Query Frame = 3
Query:   48 TNPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMENV 500
            T P VFFDI IG    GR+ MELF D+TPKTAENFR LCTGE  I +   P  YK +TFHR+IP FM Q             SIYG +F DENFK+KHTGPG+LSMAN+GPNTNG QFFI T    +LDGKH VFG+V+DG   ++ +ENV
Sbjct:   11 TRPIVFFDISIGDTPAGRIKMELFDDITPKTAENFRQLCTGEHRINSV--PQGYKKATFHRVIPQFMVQGGDFVRGDGTGSFSIYGAQFEDENFKVKHTGPGLLSMANSGPNTNGCQFFITTAPAEFLDGKHCVFGRVIDGLLTVRKIENV 159          
BLAST of CX294850 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.658e-44
Identity = 91/167 (54.49%), Postives = 112/167 (67.07%), Query Frame = 3
Query:   57 RVFFDILIGK---MNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMENVGSESG-RTSHTVVIED 545
            +V+FDI +G       GR+V+ L+ D  P+T ENFRALCTGEKG G       YKGSTFHR+I +FM Q            +S+YG  F DENFK+ H GPG+LSMANAGPNTNGSQFFICT KT WLDG+HVVFG+V++G  V+K +E   ++ G R    VVI D
Sbjct:   91 KVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFG-------YKGSTFHRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVIAD 250          
BLAST of CX294850 vs. ExPASy Swiss-Prot
Match: PPIH_HUMAN (Peptidyl-prolyl cis-trans isomerase H OS=Homo sapiens GN=PPIH PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 3.472e-44
Identity = 87/150 (58.00%), Postives = 104/150 (69.33%), Query Frame = 3
Query:   51 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMENV 500
            NP VFFD+ IG    GR+ +ELFADV PKTAENFR  CTGE      G P+ YKGSTFHR+I +FM Q             SIY   FADENFK++H+ PG+LSMAN+GP+TNG QFFI   K  WLDGKHVVFGK++DG  V++ +ENV
Sbjct:   10 NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENV 157          
BLAST of CX294850 vs. ExPASy Swiss-Prot
Match: PPIH_GIBZE (Peptidyl-prolyl cis-trans isomerase H OS=Gibberella zeae GN=CYP3 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 3.472e-44
Identity = 92/149 (61.74%), Postives = 100/149 (67.11%), Query Frame = 3
Query:   51 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXXESIYGMK-FADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDME 494
            NP VFFDI IG    GR+  ELF DV PKTAENFR  CTGE      G+P  YKGS FHRIIPNFMCQ              I+G K F DENF +KH  PG+LSMANAGPNTNGSQFFI T  TP+LD KHVVFGKV +G  V+K ME
Sbjct:   11 NPLVFFDITIGGEPLGRITFELFKDVVPKTAENFRQFCTGESKTPV-GRPQGYKGSKFHRIIPNFMCQGGDFLNGDGTGSTCIWGFKSFEDENFTLKHDQPGLLSMANAGPNTNGSQFFITTVPTPFLDNKHVVFGKVFEGMDVVKKME 158          
BLAST of CX294850 vs. ExPASy Swiss-Prot
Match: PPIH_BOVIN (Peptidyl-prolyl cis-trans isomerase H OS=Bos taurus GN=PPIH PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 3.472e-44
Identity = 87/150 (58.00%), Postives = 104/150 (69.33%), Query Frame = 3
Query:   51 NPRVFFDILIGKMNKGRVVMELFADVTPKTAENFRALCTGEKGIGTSGKPLHYKGSTFHRIIPNFMCQXXXXXXXXXXXXESIYGMKFADENFKMKHTGPGILSMANAGPNTNGSQFFICTQKTPWLDGKHVVFGKVVDGYSVIKDMENV 500
            NP VFFD+ IG    GR+ +ELFADV PKTAENFR  CTGE      G P+ YKGSTFHR+I +FM Q             SIY   FADENFK++H+ PG+LSMAN+GP+TNG QFFI   K  WLDGKHVVFGK++DG  V++ +ENV
Sbjct:   10 NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENV 157          
The following BLAST results are available for this feature:
BLAST of CX294850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237
Match NameE-valueIdentityDescription
PAL4A_HUMAN2.840e-4656.29Peptidylprolyl cis-trans isomerase A-like 4A OS=Ho... [more]
PPIA2_RHIOR6.327e-4657.41Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus... [more]
CP20C_ARATH8.264e-4660.53Peptidyl-prolyl cis-trans isomerase CYP20-3, chlor... [more]
PAL4B_HUMAN2.404e-4556.29Peptidylprolyl cis-trans isomerase A-like 4B OS=Ho... [more]
CYPC_YEAST9.137e-4552.54Peptidyl-prolyl cis-trans isomerase C, mitochondri... [more]
PPIH_CRYNE2.658e-4458.94Peptidyl-prolyl cis-trans isomerase H OS=Cryptococ... [more]
CP20B_ARATH2.658e-4454.49Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
PPIH_HUMAN3.472e-4458.00Peptidyl-prolyl cis-trans isomerase H OS=Homo sapi... [more]
PPIH_GIBZE3.472e-4461.74Peptidyl-prolyl cis-trans isomerase H OS=Gibberell... [more]
PPIH_BOVIN3.472e-4458.00Peptidyl-prolyl cis-trans isomerase H OS=Bos tauru... [more]

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Properties
Property NameValue
Genbank descriptionC05056F11SK PhIFruit1 Citrus clementina cDNA clone C05056F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294850 ID=CX294850; Name=CX294850; organism=Citrus clementina; type=EST; length=547bp
TCCAGGTCGAATTACAGCAAAAGGCTTTTGATTGGATAGAAAAAATGACG
AATCCAAGGGTTTTCTTTGACATTCTGATTGGAAAGATGAACAAGGGGCG
AGTTGTGATGGAGCTATTTGCTGACGTCACCCCAAAAACTGCTGAAAACT
TCCGTGCTCTCTGCACTGGTGAGAAAGGGATTGGAACGTCTGGGAAGCCA
CTACACTATAAGGGCTCGACATTTCACCGCATAATCCCTAACTTCATGTG
TCAGGGGGGAGATTTCACTCGGGGAAATGGAACTGGAGGAGAATCGATAT
ATGGGATGAAGTTTGCTGATGAGAACTTCAAGATGAAGCATACTGGGCCT
GGAATTCTGTCAATGGCTAATGCTGGACCTAACACTAATGGTTCACAGTT
TTTTATATGCACTCAGAAAACACCATGGCTTGATGGCAAACATGTTGTGT
TTGGGAAAGTGGTAGACGGTTACAGTGTCATCAAGGATATGGAGAACGTG
GGTTCTGAGAGTGGGAGGACTTCGCATACAGTTGTGATTGAAGACTG
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