CX294851

Overview
NameCX294851
Unique NameCX294851
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length643
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294851 vs. ExPASy Swiss-Prot
Match: AMPD3_HUMAN (AMP deaminase 3 OS=Homo sapiens GN=AMPD3 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.013e-37
Identity = 75/171 (43.86%), Postives = 106/171 (61.99%), Query Frame = 2
Query:   26 FLTHAFY---FEFNLQLPRLYNVYKQMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVFLLMVVGFDLVDDESK-PERRPTKHMPKPAEWTNEFNPXXXXXXXXXXXXXXXXXKLRESKGMPTIKLRPHCGEAGEIDHLAAAFLLCNNISHGINLRKSPVLQYLYYLAQV 526
            F+ H  Y     + +Q+PR+Y++++   ++ +F  +++N+F+PLF+ TI+P  H +LH+FL  V GFD VDDESK  +   +   P P  WT+E NP                  LR  +G+ T   RPHCGEAG I HL +AFL  +NISHG+ L+KSPVLQYLYYLAQ+
Sbjct:  457 FIQHKVYSPNMRWIIQVPRIYDIFRSKKLLPNFGKMLENIFLPLFKATINPQDHRELHLFLKYVTGFDSVDDESKHSDHMFSDKSPNPDVWTSEQNPPYSYYLYYMYANIMVLNNLRRERGLSTFLFRPHCGEAGSITHLVSAFLTADNISHGLLLKKSPVLQYLYYLAQI 627          
BLAST of CX294851 vs. ExPASy Swiss-Prot
Match: AMPD3_MOUSE (AMP deaminase 3 OS=Mus musculus GN=Ampd3 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.629e-37
Identity = 75/171 (43.86%), Postives = 106/171 (61.99%), Query Frame = 2
Query:   26 FLTHAFY---FEFNLQLPRLYNVYKQMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVFLLMVVGFDLVDDESK-PERRPTKHMPKPAEWTNEFNPXXXXXXXXXXXXXXXXXKLRESKGMPTIKLRPHCGEAGEIDHLAAAFLLCNNISHGINLRKSPVLQYLYYLAQV 526
            F+ H  Y     + +Q+PR+Y++++   ++ +F  +++N+F+PLF+ TI+P  H +LH+FL  V GFD VDDESK  +   +   P P  WT+E NP                  LR  +G+ T   RPHCGEAG I HL +AFL  +NISHG+ L+KSPVLQYLYYLAQ+
Sbjct:  456 FIQHKVYSPNMRWIIQVPRIYDIFRSKKLLPNFGKMLENIFLPLFKATINPQDHRELHLFLKYVTGFDSVDDESKHSDHMFSDKSPSPDLWTSEQNPPYSYYLYYMYANIMVLNNLRRERGLSTFLFRPHCGEAGSITHLVSAFLTADNISHGLLLKKSPVLQYLYYLAQI 626          
BLAST of CX294851 vs. ExPASy Swiss-Prot
Match: AMPD1_MOUSE (AMP deaminase 1 OS=Mus musculus GN=Ampd1 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.434e-37
Identity = 72/157 (45.86%), Postives = 100/157 (63.69%), Query Frame = 2
Query:   59 LQLPRLYNVYKQMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVFLLMVVGFDLVDDESKPERRP-TKHMPKPAEWTNEFNPXXXXXXXXXXXXXXXXXKLRESKGMPTIKLRPHCGEAGEIDHLAAAFLLCNNISHGINLRKSPVLQYLYYLAQV 526
            +Q+PR+Y+V++    +  F  +++N+F+P+FE TI+P +HP L VFL  + GFD VDDESK      +   PKP EWT   NP                  LR+ +GM T   RPHCGEAG + HL  AF++ +NISHG+NL+KSPVLQYL++LAQ+
Sbjct:  455 IQVPRIYDVFRSKNFLPHFGKMLENIFLPVFEATINPQAHPDLSVFLKHITGFDSVDDESKHSGHMFSSKSPKPEEWTMGNNPSYTYYAYYMYANITVLNSLRKERGMNTFLFRPHCGEAGALTHLMTAFMIADNISHGLNLKKSPVLQYLFFLAQI 611          
BLAST of CX294851 vs. ExPASy Swiss-Prot
Match: AMPD1_HUMAN (AMP deaminase 1 OS=Homo sapiens GN=AMPD1 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.226e-36
Identity = 71/157 (45.22%), Postives = 101/157 (64.33%), Query Frame = 2
Query:   59 LQLPRLYNVYKQMGIVKSFQNIIDNVFIPLFEVTIDPSSHPQLHVFLLMVVGFDLVDDESKPERRP-TKHMPKPAEWTNEFNPXXXXXXXXXXXXXXXXXKLRESKGMPTIKLRPHCGEAGEIDHLAAAFLLCNNISHGINLRKSPVLQYLYYLAQV 526
            +Q+PR+Y+V++    +  F  +++N+F+P+FE TI+P + P+L VFL  + GFD VDDESK      +   PKP EWT E NP                  LR+ +GM T   RPHCGEAG + HL  AF++ ++ISHG+NL+KSPVLQYL++LAQ+
Sbjct:  457 IQVPRIYDVFRSKNFLPHFGKMLENIFMPVFEATINPQADPELSVFLKHITGFDSVDDESKHSGHMFSSKSPKPQEWTLEKNPSYTYYAYYMYANIMVLNSLRKERGMNTFLFRPHCGEAGALTHLMTAFMIADDISHGLNLKKSPVLQYLFFLAQI 613          
The following BLAST results are available for this feature:
BLAST of CX294851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
AMPD3_HUMAN2.013e-3743.86AMP deaminase 3 OS=Homo sapiens GN=AMPD3 PE=1 SV=1[more]
AMPD3_MOUSE2.629e-3743.86AMP deaminase 3 OS=Mus musculus GN=Ampd3 PE=2 SV=1[more]
AMPD1_MOUSE3.434e-3745.86AMP deaminase 1 OS=Mus musculus GN=Ampd1 PE=2 SV=1[more]
AMPD1_HUMAN2.226e-3645.22AMP deaminase 1 OS=Homo sapiens GN=AMPD1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05056F12SK PhIFruit1 Citrus clementina cDNA clone C05056F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294851 ID=CX294851; Name=CX294851; organism=Citrus clementina; type=EST; length=643bp
GAGACTACTACGTGTTAATGTTGTGTTTCTAACACATGCCTTTTATTTCG
AATTCAATTTGCAGCTACCACGACTATACAATGTATACAAGCAAATGGGC
ATTGTTAAATCTTTTCAAAATATTATTGATAATGTGTTCATTCCCCTATT
TGAAGTCACGATTGATCCAAGCTCCCATCCTCAACTTCATGTGTTCCTGT
TGATGGTTGTGGGTTTTGACCTTGTAGATGATGAAAGTAAACCAGAAAGA
CGTCCAACAAAGCACATGCCCAAACCGGCTGAATGGACCAATGAGTTCAA
TCCGGCTTACTCGTATTATACTTATTACTTCTATGCAAACTTGTATACTC
TCAACAAGCTTCGTGAATCAAAGGGAATGCCAACAATTAAACTGCGGCCT
CATTGTGGGGAGGCTGGTGAAATTGACCATTTGGCTGCTGCATTCCTTTT
ATGTAATAACATATCACATGGTATTAATTTGCGGAAATCCCCAGTTTTGC
AGTACTTGTATTACCTCGCTCAGGTTGGCTACACTTGCATTGGCTTGTTC
CTTTTTGAGGATTTGGCTTTGGTTCTGTAGGCTATATAACTCCTAGTGTA
TCATTCATGACATTGGAATTAGGCATGTACATAGAAATTGCAT
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