CX294859

Overview
NameCX294859
Unique NameCX294859
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length641
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9463 contig Ccv1_Contig9463:38..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294859 vs. ExPASy Swiss-Prot
Match: RPE_BUCBP (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpe PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.413e-20
Identity = 53/130 (40.77%), Postives = 79/130 (60.77%), Query Frame = 2
Query:  260 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV---TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLKPATSLSAIECVL 640
            ++S S+LSANF++LGE +  V  +G D IH DVMD  +V N+T GP+V+++LR V     + +DVHLM    +  +  F K   +I+S H E  ST ++ +T+  IK  G K G+ L P T L  ++ VL
Sbjct:    5 LLSSSVLSANFSRLGEDIFDVLKSGSDMIHYDVMDNHYVKNLTFGPIVLESLRSVEKIKSMVIDVHLMTCPVDDLIIKFAKLDVNIISFHPE--STNNVEKTIKLIKSYGCKVGLALNPLTPLCVLDNVL 132          
BLAST of CX294859 vs. ExPASy Swiss-Prot
Match: RPE1_ORYSJ (Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa subsp. japonica GN=Os09g0505700 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.122e-19
Identity = 48/122 (39.34%), Postives = 69/122 (56.56%), Query Frame = 2
Query:  263 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLKPATSLSAI 628
            ++PS+LS++FA L  +   +   G DW+H+D+MDG FVPN+TIG  V+ +LR  T   LD HLM+  P   V    KAGA   + H E S   +    +  IK  G + GV L+P T +  +
Sbjct:    9 IAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRD-NWQELIQSIKAKGMRPGVSLRPGTPVEEV 129          
BLAST of CX294859 vs. ExPASy Swiss-Prot
Match: RPE_CANGA (Ribulose-phosphate 3-epimerase OS=Candida glabrata GN=RPE1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.535e-18
Identity = 53/139 (38.13%), Postives = 76/139 (54.68%), Query Frame = 2
Query:  260 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP----------------LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLKPATSLSAI 628
            I++PSIL+++FA LG +   V  +G +W+H+DVMDG FVPNIT+G  +V +LR                       D H+M+ EPE+ V DF KAGAD  + H E  +T      +  IK+ G KA   +KP T +  +
Sbjct:    5 IIAPSILASDFANLGCECHRVINSGAEWLHIDVMDGHFVPNITLGQPIVTSLRRAVPRSQEEEKASGEVARPTAFFDCHMMVEEPEKWVADFAKAGADQFTFHYE--ATKDPLSLVKLIKENGIKAACAIKPGTPVDVL 141          
BLAST of CX294859 vs. ExPASy Swiss-Prot
Match: RPE_SCHPO (Ribulose-phosphate 3-epimerase OS=Schizosaccharomyces pombe GN=SPAC31G5.05c PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.029e-18
Identity = 48/125 (38.40%), Postives = 73/125 (58.40%), Query Frame = 2
Query:  263 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALR---PVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLKPATSLSAI 628
            ++PS+L+ +FA L ++V  +   G DW+HVDVMD +FVPN+TIGP+VV A+R      +   D HLM++EPE+ +     AGA +   H E  +T      +++  + G   G  LKP T +  I
Sbjct:    6 IAPSLLAGDFANLEKEVGRMLKYGSDWLHVDVMDAQFVPNLTIGPIVVKAMRNHYTKEEAFFDCHLMVIEPERYIDQLADAGASLFCFHYE--ATEKHEEIISRAHEKGMLVGCALKPKTPVEVI 128          
BLAST of CX294859 vs. ExPASy Swiss-Prot
Match: RPE_ASHGO (Ribulose-phosphate 3-epimerase OS=Ashbya gossypii GN=RPE1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.754e-17
Identity = 52/134 (38.81%), Postives = 77/134 (57.46%), Query Frame = 2
Query:  260 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--------TDLP---LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLKPATSLSAI 628
            I++PSIL+++FA L      V  AG +W+H+DVMDG FVPNIT+GP +V +LR          +D P    D H+M+ EPE+ V  F++ GAD  + H E  +T +    +  IK  G +A   +KP T +  +
Sbjct:    5 IIAPSILASDFANLECGCHRVINAGAEWLHIDVMDGHFVPNITLGPPIVKSLRKAVPRVGDKESDKPKAFFDCHMMVAEPEKWVDVFVENGADQFTFHYE--ATKNPLELVKLIKSRGIRAACAIKPDTPVDVL 136          
BLAST of CX294859 vs. ExPASy Swiss-Prot
Match: ALSE_ECOLI (D-allulose-6-phosphate 3-epimerase OS=Escherichia coli (strain K12) GN=alsE PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.754e-17
Identity = 40/123 (32.52%), Postives = 74/123 (60.16%), Query Frame = 2
Query:  263 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLKPATSLSAIE 631
            +SPS++  +  K  EQ++ ++ +  D+ H+D+MDG FVPN+T+ P  V  ++ +   PLD HLM+  P+  +    +AGAD +++H E  +     R +++I+    K G++L P T + A++
Sbjct:    3 ISPSLMCMDLLKFKEQIEFID-SHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLHPETING-QAFRLIDEIRRHDMKVGLILNPETPVEAMK 123          
BLAST of CX294859 vs. ExPASy Swiss-Prot
Match: RPE_PONAB (Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=RPE PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.533e-16
Identity = 48/121 (39.67%), Postives = 74/121 (61.16%), Query Frame = 2
Query:  263 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLKPATSL 619
            + PSIL+++ A LG +   +  +G D++H+DVMDG FVPNIT G  VV++LR     D   D+H+M+ +PEQ V     AGA+  + H E  +T +    +  I++ G K G+ +KP TS+
Sbjct:    7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYAFHLE--ATENPGALIKDIRENGMKVGLAIKPGTSV 125          
BLAST of CX294859 vs. ExPASy Swiss-Prot
Match: RPE_HUMAN (Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=RPE PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.533e-16
Identity = 48/121 (39.67%), Postives = 74/121 (61.16%), Query Frame = 2
Query:  263 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLKPATSL 619
            + PSIL+++ A LG +   +  +G D++H+DVMDG FVPNIT G  VV++LR     D   D+H+M+ +PEQ V     AGA+  + H E  +T +    +  I++ G K G+ +KP TS+
Sbjct:    7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLE--ATENPGALIKDIRENGMKVGLAIKPGTSV 125          
BLAST of CX294859 vs. ExPASy Swiss-Prot
Match: RPE_MOUSE (Ribulose-phosphate 3-epimerase OS=Mus musculus GN=Rpe PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.370e-16
Identity = 47/121 (38.84%), Postives = 73/121 (60.33%), Query Frame = 2
Query:  263 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLKPATSL 619
            + PSIL+++ A LG +   +  +G D++H+DVMDG FVPNIT G  VV++LR     D   D+H+M+  PEQ V     AGA+  + H E  +T +    +  I++ G K G+ +KP T++
Sbjct:    7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSRPEQWVKPMAVAGANQYTFHLE--ATENPGALIKDIRENGMKVGLAIKPGTTV 125          
The following BLAST results are available for this feature:
BLAST of CX294859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RPE_BUCBP8.413e-2040.77Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
RPE1_ORYSJ7.122e-1939.34Ribulose-phosphate 3-epimerase, cytoplasmic isofor... [more]
RPE_CANGA3.535e-1838.13Ribulose-phosphate 3-epimerase OS=Candida glabrata... [more]
RPE_SCHPO6.029e-1838.40Ribulose-phosphate 3-epimerase OS=Schizosaccharomy... [more]
RPE_ASHGO1.754e-1738.81Ribulose-phosphate 3-epimerase OS=Ashbya gossypii ... [more]
ALSE_ECOLI1.754e-1732.52D-allulose-6-phosphate 3-epimerase OS=Escherichia ... [more]
RPE_PONAB2.533e-1639.67Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=... [more]
RPE_HUMAN2.533e-1639.67Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=... [more]
RPE_MOUSE7.370e-1638.84Ribulose-phosphate 3-epimerase OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05056G08SK PhIFruit1 Citrus clementina cDNA clone C05056G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294859 ID=CX294859; Name=CX294859; organism=Citrus clementina; type=EST; length=641bp
GAAAACAGATACCATATTTCCTCTCACTAGCCATAACCAAACCAACAGTT
ACGTTTTAGAGAGAGAAACAAAAAAAAGCGTCAAGATGTCTACAGGCTCG
CTGTGTTCATCAACGACTCAGATCAATGGCTTTACAGGTGGTTTCATGTT
GCAGAAAACCAATCTTAATCAGCCCAGTTCACTTAGTTTTACAAGGGGGA
GAATTCATACTATAGTGAAGGCATCAGCTCGTGTGGATAAGTTCTCGAAA
AGTGATATTATTGTTTCTCCATCTATTCTCTCTGCTAATTTCGCGAAGTT
AGGCGAGCAGGTAAAAGCAGTGGAATTGGCTGGTTGTGATTGGATTCATG
TTGATGTCATGGATGGTCGTTTTGTTCCAAACATTACAATTGGACCTCTT
GTGGTTGATGCCTTGCGCCCTGTGACAGACCTTCCTTTGGATGTTCATTT
GATGATTGTCGAACCTGAACAACGAGTGCCTGATTTTATCAAGGCTGGAG
CAGACATAGTCAGCGTCCACTGTGAGCAATCATCCACCATTCATTTGCAC
CGCACTCTTAACCAAATAAAAGATTTGGGAGCTAAAGCTGGAGTTGTCCT
TAAACCTGCTACCTCACTGAGTGCAATAGAATGTGTCCTTG
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