CX294863

Overview
NameCX294863
Unique NameCX294863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig886 contig Ccv1_Contig886:17..641. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX294863 vs. ExPASy Swiss-Prot
Match: API2_SOLTU (Aspartic protease inhibitor 2 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.014e-11
Identity = 58/194 (29.90%), Postives = 95/194 (48.97%), Query Frame = 3 
Query:   81 QPLLGISSNS---EPVLDIIGNKVKSTLEYKLIPVLDGAGGFSTHLG----TNGQCPLDVIQLSSP-SERGDNLRLLPYDNYKIVKVSTDVNLRFPVKVSVKPCNEEPLWKVDS----YDDPLIVTGGSEGHPGAETLLNWFKIEKAGNFSYGGVYNIVHCPSVCLSC--PRRCNKIGVSTKDGVRRLLLVGDH 620
            Q L+ + S S   +PVLD  G ++     Y++I +  GA G   +LG    ++G CP  V + +S     G  +R +P      +     +N++F +  +VK C    +WKV +    +   L+ TGG+ G   +    ++FKI K  NF Y  +Y  +  P +C  C     C K+GV  ++G RRL LV ++
Sbjct:   25 QNLIDLPSESPLPKPVLDTNGKELNPNSSYRIISIGRGALGGDVYLGKSPNSDGPCPDGVFRYNSDVGPSGTFVRFIPLSGG--IFEDQLLNIQFNI-ATVKLCVSYTIWKVGNLNAYFRTMLLETGGTIGQADS----SYFKIVKLSNFGYNLLYCPITPPFLCPFCRDDNFCAKVGVVIQNGKRRLALVNEN 211
The following BLAST results are available for this feature:
BLAST of CX294863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
API2_SOLTU3.014e-1129.90Aspartic protease inhibitor 2 OS=Solanum tuberosum... [more]

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Properties
Property NameValue
Genbank descriptionC05056G12SK PhIFruit1 Citrus clementina cDNA clone C05056G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294863 ID=CX294863; Name=CX294863; organism=Citrus clementina; type=EST; length=625bp
GCAGCCAGCCTTCCAGTGGCAAAAAAATGAAGACTTCATTGATAACAACA
CTCTCCTTCCTTATCCTTACCTTGGCCACGCAGCCTCTATTGGGCATCTC
ATCAAACTCTGAACCTGTCTTAGATATCATTGGCAACAAGGTCAAATCCA
CCCTCGAGTATAAACTTATCCCAGTCCTAGATGGCGCCGGTGGATTCAGC
ACACACCTAGGCACAAATGGACAGTGTCCCTTGGACGTTATCCAATTAAG
TTCTCCTAGCGAAAGGGGAGATAATTTAAGATTACTTCCGTACGACAATT
ACAAAATTGTCAAGGTATCCACTGATGTCAACCTGAGATTCCCCGTAAAA
GTTTCTGTTAAGCCCTGTAATGAAGAACCATTGTGGAAAGTTGATAGCTA
TGACGATCCATTAATTGTAACCGGCGGAAGTGAGGGCCACCCAGGAGCTG
AAACGTTGCTAAATTGGTTTAAGATTGAGAAAGCTGGAAATTTTTCATAT
GGTGGTGTATACAATATTGTCCATTGTCCGAGTGTCTGTCTATCTTGTCC
TAGACGCTGCAACAAAATTGGCGTTTCAACTAAGGATGGCGTTCGACGTC
TGCTTCTAGTTGGTGATCATGAACC
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