CX294869
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX294869 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2) HSP 1 Score: 169.474 bits (428), Expect = 1.180e-41 Identity = 90/136 (66.18%), Postives = 104/136 (76.47%), Query Frame = 1 Query: 187 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSAS---FKITA-EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLP 582 GA S P++ F G LKK + S++ FK+ A E+DE KQT +DRWKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLRTY+ DNTM G YIAPAFMDKLVVHI+KNFM+LP Sbjct: 10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLP 144
BLAST of CX294869 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3) HSP 1 Score: 168.703 bits (426), Expect = 2.013e-41 Identity = 91/140 (65.00%), Postives = 104/140 (74.29%), Query Frame = 1 Query: 187 GAATSVPS-SSFFGTSLKK--VSSRIP---PSKVPSASFKITA--EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLP 582 GA S P+ SSF G L K VS+ + S ++ FK A EVDE KQT +DRWKGLAYD SDDQQDITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN MDG YIA FMDKLVVH++KNFM+LP Sbjct: 10 GAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLP 149
BLAST of CX294869 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 1.305e-40 Identity = 86/135 (63.70%), Postives = 101/135 (74.81%), Query Frame = 1 Query: 187 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITA---EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLP 582 GA S P+ F G +K +K+ S ++ A E+D+ KQT DRWKGLAYD SDDQQDITRGKG VDSLFQAPMG GTH A++SSY+YISQGLR Y+ DNTMDGLYIAPAFMDKL+VH+ KNFM+LP Sbjct: 10 GAPASTPTI-FLGKKVKNYYHG--GNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLP 141
BLAST of CX294869 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 3.554e-38 Identity = 84/135 (62.22%), Postives = 99/135 (73.33%), Query Frame = 1 Query: 187 GAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITAEVDENKQTKK--DRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLP 582 GA S P++ F G LKK V+S + S + + T EN K+ D+WKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLR Y+ DNTM G YIAPAFMDKLVVH++KNFM+LP Sbjct: 10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLP 143
BLAST of CX294869 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 1.034e-37 Identity = 81/144 (56.25%), Postives = 100/144 (69.44%), Query Frame = 1 Query: 154 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSS-RIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLP 582 A PL+ NGS A SVP+S F G+SLKK ++ R P S S + +T + EN++ D+W LA D SDDQ DI RGKG VDSLFQAP GTH + SS++Y SQGLR Y++DN + YIAPAFMDKLVVHITKNF++LP Sbjct: 11 ATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSS---SRTTSMTVKAAENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLP 151
BLAST of CX294869 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.166e-19 Identity = 52/115 (45.22%), Postives = 70/115 (60.87%), Query Frame = 1 Query: 247 SRIPPSKVPSASFKITAEVDENKQTKKDRWKGL--AYDESDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLP 582 +R+ V A ++ A + + RW+ + D SDDQQDITRG+ VD LFQ G G TH AV+SS +Y+SQ ++N N DG YI+PAF+DK+ +HI KNFM LP Sbjct: 18 ARVATRSVRRAQLQVVAP----SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLP 126
BLAST of CX294869 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 7.211e-15 Identity = 41/48 (85.42%), Postives = 42/48 (87.50%), Query Frame = 1 Query: 340 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLR 483 GLAYD SDDQQDITRG VDSLFQAPM GTHYAVMSSY+YISQGLR Sbjct: 1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR 46 The following BLAST results are available for this feature:
BLAST of CX294869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294869 ID=CX294869; Name=CX294869; organism=Citrus clementina; type=EST; length=600bpback to top |