CX294869

Overview
NameCX294869
Unique NameCX294869
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length600
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig588 contig Ccv1_Contig588:1..600. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294869 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.180e-41
Identity = 90/136 (66.18%), Postives = 104/136 (76.47%), Query Frame = 1
Query:  187 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSAS---FKITA-EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLP 582
            GA  S P++ F G  LKK  +        S++   FK+ A E+DE KQT +DRWKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLRTY+ DNTM G YIAPAFMDKLVVHI+KNFM+LP
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLP 144          
BLAST of CX294869 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 2.013e-41
Identity = 91/140 (65.00%), Postives = 104/140 (74.29%), Query Frame = 1
Query:  187 GAATSVPS-SSFFGTSLKK--VSSRIP---PSKVPSASFKITA--EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLP 582
            GA  S P+ SSF G  L K  VS+ +     S   ++ FK  A  EVDE KQT +DRWKGLAYD SDDQQDITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN MDG YIA  FMDKLVVH++KNFM+LP
Sbjct:   10 GAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLP 149          
BLAST of CX294869 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.305e-40
Identity = 86/135 (63.70%), Postives = 101/135 (74.81%), Query Frame = 1
Query:  187 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITA---EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLP 582
            GA  S P+  F G  +K        +K+ S   ++ A   E+D+ KQT  DRWKGLAYD SDDQQDITRGKG VDSLFQAPMG GTH A++SSY+YISQGLR Y+ DNTMDGLYIAPAFMDKL+VH+ KNFM+LP
Sbjct:   10 GAPASTPTI-FLGKKVKNYYHG--GNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLP 141          
BLAST of CX294869 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.554e-38
Identity = 84/135 (62.22%), Postives = 99/135 (73.33%), Query Frame = 1
Query:  187 GAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITAEVDENKQTKK--DRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLP 582
            GA  S P++ F G  LKK V+S +      S + + T    EN   K+  D+WKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLR Y+ DNTM G YIAPAFMDKLVVH++KNFM+LP
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLP 143          
BLAST of CX294869 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.034e-37
Identity = 81/144 (56.25%), Postives = 100/144 (69.44%), Query Frame = 1
Query:  154 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSS-RIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLP 582
            A   PL+ NGS A  SVP+S F G+SLKK ++ R P S   S +  +T +  EN++   D+W  LA D SDDQ DI RGKG VDSLFQAP   GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKLVVHITKNF++LP
Sbjct:   11 ATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSS---SRTTSMTVKAAENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLP 151          
BLAST of CX294869 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.166e-19
Identity = 52/115 (45.22%), Postives = 70/115 (60.87%), Query Frame = 1
Query:  247 SRIPPSKVPSASFKITAEVDENKQTKKDRWKGL--AYDESDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLP 582
            +R+    V  A  ++ A      + +  RW+ +    D SDDQQDITRG+  VD LFQ   G G TH AV+SS +Y+SQ   ++N  N  DG YI+PAF+DK+ +HI KNFM LP
Sbjct:   18 ARVATRSVRRAQLQVVAP----SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLP 126          
BLAST of CX294869 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.211e-15
Identity = 41/48 (85.42%), Postives = 42/48 (87.50%), Query Frame = 1
Query:  340 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLR 483
            GLAYD SDDQQDITRG   VDSLFQAPM  GTHYAVMSSY+YISQGLR
Sbjct:    1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR 46          
The following BLAST results are available for this feature:
BLAST of CX294869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RCA_ORYSJ1.180e-4166.18Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE2.013e-4165.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU1.305e-4063.70Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU3.554e-3862.22Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.034e-3756.25Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE2.166e-1945.22Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY7.211e-1585.42Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionC05056H06SK PhIFruit1 Citrus clementina cDNA clone C05056H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294869 ID=CX294869; Name=CX294869; organism=Citrus clementina; type=EST; length=600bp
CTCGTGCCGAATTCGGCACGAGGCTGATCTTCAATTCTCTCCTCAAAGAG
CACAACACGCACCCAGCGCATTGCTTCGCTTTCCTTTGCCTGCATTGCAG
CGTGACCCTTTAGCTACTTCAATCACAGCCGTCCAATTCTCGCTAGCCTA
ATGGCTGCTGCTGTACCGTTGAGCTTCAATGGCTCTGGTGCTGCAACCTC
TGTCCCAAGCTCATCTTTCTTTGGCACCAGCTTGAAGAAGGTAAGCTCAA
GGATCCCCCCATCCAAGGTCCCTTCTGCGAGCTTCAAGATTACTGCTGAA
GTCGATGAGAACAAGCAGACCAAGAAGGACAGATGGAAGGGCCTTGCCTA
CGACGAATCTGATGACCAACAAGACATCACCAGAGGAAAAGGTGCTGTGG
ACTCTCTGTTCCAAGCCCCCATGGGAACCGGAACTCACTATGCTGTCATG
AGTTCTTATGACTACATCAGCCAAGGTCTCCGCACATACAACTTGGACAA
CACGATGGACGGTCTCTACATTGCCCCTGCTTTCATGGACAAGCTTGTTG
TTCACATCACCAAGAACTTCATGTCCCTGCCCACATCAAGGTTCCTCTCA
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