CX294892

Overview
NameCX294892
Unique NameCX294892
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294892_ssr151 microsatellite CX294892_ssr151:151..162. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig591 contig Ccv1_Contig591:1..623. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294892 vs. ExPASy Swiss-Prot
Match: DERL2_DICDI (Probable derlin-2 homolog OS=Dictyostelium discoideum GN=derl2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.225e-22
Identity = 54/140 (38.57%), Postives = 80/140 (57.14%), Query Frame = 1
Query:  193 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKSFSLAFIDLMMVYV 612
            MAQ  EDWYK +PI+T+ Y+T  +VT+V   L ++ P  L L+  LV   Y+FWRL TNF F+ +             R+ +LLEE+SFRGR+AD+L+M +FG+  L   +++   + Y        F    I  M++YV
Sbjct:    1 MAQPFEDWYKNLPIVTKIYMTGCVVTSVSVYLGLVGPLRLYLNFPLVFGKYEFWRLFTNFFFYDEIGMNFFFHMYFLVRHSRLLEESSFRGRSADYLFMWIFGSFLL---LIMDAFLFYTKIVTKVLFLAPSIAFMVIYV 137          
BLAST of CX294892 vs. ExPASy Swiss-Prot
Match: DERL3_MOUSE (Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.221e-20
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 1
Query:  217 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGM 540
            + Q+P +TR Y  A ++TT    L+++SPF L  +P LV + +Q WRLIT FLFF               RYC++LEE SFRGR ADF++M LFG   +T    +G +
Sbjct:   10 FLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITTFLFFGPLGFGFFFNMLFVFRYCRMLEEGSFRGRKADFVFMFLFGGVLMTLLGFLGSL 117          
BLAST of CX294892 vs. ExPASy Swiss-Prot
Match: DERL2_CAEEL (Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.129e-19
Identity = 49/124 (39.52%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  220 KQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKSFSLAFI 591
            ++MP +TR Y  A ++ T    L+ ++PF+L  +  L+++ YQFWRLIT+F FF               RYC +LEE SFRGR ADF+YM LFGA  +   +L G  +  L    A +  L +I
Sbjct:    9 EEMPPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFLFNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAVLM---ILSGIFVQILFLGQAFTIMLVYI 129          
BLAST of CX294892 vs. ExPASy Swiss-Prot
Match: DERL1_ARATH (Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.183e-15
Identity = 48/131 (36.64%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  211 DWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKSFSLAFIDLMM 603
            ++Y  +P IT+ Y T    TTV   L +++P ++ L P LV+K +Q WRLITN  F               ARY   LE+  F  RTADFL+M++FG+     T+L+  +IP+    F    SL F+ L +
Sbjct:    6 EFYNSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPELVLKQFQIWRLITNLFFLGGFSINFGIRLLMIARYGVQLEKGPFERRTADFLWMMIFGSF----TLLVLSVIPFFWTPFL-GVSLVFMLLYL 131          
BLAST of CX294892 vs. ExPASy Swiss-Prot
Match: DERL1_ORYSJ (Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.489e-14
Identity = 44/118 (37.29%), Postives = 62/118 (52.54%), Query Frame = 1
Query:  211 DWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESF 564
            ++Y  +P I++ Y T     TV C L I++P  L L+   V K +Q WRL T+F F  K            ARY   LE+ +F  RTADFL+M++FGA     ++L    IP+L   F
Sbjct:    6 EYYNSLPPISKAYGTLCFFATVLCQLQILNPPFLALYYPFVFKKFQIWRLFTSFFFLGKFSINFGIRLLMIARYGVQLEKGAFEKRTADFLWMMIFGAI----SLLALSAIPFLDIYF 119          
BLAST of CX294892 vs. ExPASy Swiss-Prot
Match: DER11_MAIZE (Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.474e-14
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 1
Query:  211 DWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESF 564
            ++YK +P I++ Y T    TTV   L I+ P  L L   LV K ++ WRL+T+F F               ARY  +LE+ +F  RTADFL+M++FGA     ++L+  +IP  +  F
Sbjct:    6 EYYKSLPPISKAYGTLCFFTTVLVQLQILHPLFLYLDYPLVFKKFEIWRLLTSFFFLAPFSMKFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAI----SLLVLSIIPLFNSFF 119          
BLAST of CX294892 vs. ExPASy Swiss-Prot
Match: DER12_MAIZE (Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.370e-13
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = 1
Query:  211 DWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLS 555
            ++YK +P I++ Y T    TTV   L I++P  L L+   V K ++ WR+ T+F F               ARY  +LE+ +F  RTADFL+M++FGA     ++L+  +IP L+
Sbjct:    6 EYYKSLPPISKAYGTLCFFTTVLVRLHILNPLFLYLYYPRVFKKFEVWRIFTSFFFLGPFSINFGIRLLMIARYGVMLEKGAFDKRTADFLWMMIFGAI----SLLVLSVIPQLN 116          
The following BLAST results are available for this feature:
BLAST of CX294892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
DERL2_DICDI2.225e-2238.57Probable derlin-2 homolog OS=Dictyostelium discoid... [more]
DERL3_MOUSE1.221e-2042.59Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1[more]
DERL2_CAEEL5.129e-1939.52Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 S... [more]
DERL1_ARATH1.183e-1536.64Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1[more]
DERL1_ORYSJ6.489e-1437.29Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 P... [more]
DER11_MAIZE8.474e-1436.44Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2[more]
DER12_MAIZE9.370e-1335.65Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05057B09SK PhIFruit1 Citrus clementina cDNA clone C05057B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294892 ID=CX294892; Name=CX294892; organism=Citrus clementina; type=EST; length=623bp
CTCGTGCCGAATTCGGCACGAGGAATTGAAAGCTCTCTCCCGATCTATCT
CCACAATCAAAACCCCCCCTTTTTTTTTTTCACCACTTCACTCAGAAATC
TTTAAATTTTCAAAAAGAAAAAAAAAATCAGCACACTTTCAGGGCTCTAG
AGATAGATAGATAAACCATATAGTCAAAAAAATTAAAAGAAAATGGCTCA
AGCTGTTGAAGATTGGTACAAACAGATGCCTATCATCACCCGCACGTATC
TCACAGCCGCTATCGTCACCACCGTCGGCTGCTCTCTCGATATAATATCT
CCTTTTAATCTGTGCTTGCACCCAACGTTAGTGGTTAAGCATTATCAGTT
TTGGCGCCTTATCACCAATTTTCTCTTCTTCCGGAAAATGGATTTAGATT
TTTTGTTCCATATGTTTTTTCTCGCACGATACTGCAAGCTTCTTGAAGAG
AATTCCTTCAGGGGAAGGACTGCAGATTTCTTGTACATGCTTTTATTTGG
AGCCACTTTTCTAACCGGCACTGTTCTTATTGGGGGGATGATACCTTACT
TGTCAGAATCATTTGCAAAATCATTTTCCTTAGCATTCATTGACCTCATG
ATGGTTTATGTTGAGCAACAAAT
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