CX294898

Overview
NameCX294898
Unique NameCX294898
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_BORHD (Tyrosyl-tRNA synthetase OS=Borrelia hermsii (strain DAH) GN=tyrS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.736e-13
Identity = 40/113 (35.40%), Postives = 65/113 (57.52%), Query Frame = 1
Query:  250 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFGSSNVVILN 588
            LE+RG L+  T+    S+    EK +  Y G D T+ SLH+G+L+  + ++   R GH  +AL+GG T ++GDPSGK + R  L  + +E N+  I++    I   S+  I++
Sbjct:    8 LEKRGFLKQCTNLEALSVLMDREKMV-FYVGVDATSTSLHIGHLIPFMAMAHLQRQGHIPIALVGGGTTKIGDPSGKDVMRKILPKEDIEANVKAIKEQLLRIIDFSHGYIID 119          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_LACJO (Tyrosyl-tRNA synthetase OS=Lactobacillus johnsonii GN=tyrS PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.267e-13
Identity = 38/118 (32.20%), Postives = 62/118 (52.54%), Query Frame = 1
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFGSSNVVILN 588
            ++++ L+ RG +   T +       +    L +YCG DPT +SLH+G+L+  ++L  F   G+  V LIGG T  +GDPSG+  ER     + ++ N   +      +FG+ N  I N
Sbjct:    5 DILEDLKWRGAINQETDEEGLRKYLAEHDDLALYCGTDPTGDSLHIGHLIPFMILKRFQMAGYHPVILIGGGTGAIGDPSGRKTERTLQTAEQVKHNEEKLTAQMKKLFGTENFEIRN 122          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_CAUSK (Tyrosyl-tRNA synthetase OS=Caulobacter sp. (strain K31) GN=tyrS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.267e-13
Identity = 42/105 (40.00%), Postives = 62/105 (59.05%), Query Frame = 1
Query:  241 VDTLERRGLLESITS-DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFS 552
            + TL+ RG +  IT  D L + A+    T   Y GFD TA SLH+G+L+ I++L    + GH+ + L+GG T +VGDP+GK   R  L    +  NI GI++ F+
Sbjct:   12 LQTLQARGYIHQITHPDELDAAAAGGIVT--AYIGFDATAPSLHVGSLIQIMMLRRLQQAGHKPIVLMGGGTTKVGDPTGKDESRKLLSDADIAANIAGIKQVFA 114          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_GLUOX (Tyrosyl-tRNA synthetase OS=Gluconobacter oxydans GN=tyrS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 1
Query:  325 LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRK------TFSTIFGSSNVVILN 588
            +  Y GFDPTA+SLH+GN L I+ L    + GH+ +AL+GG TA++GDPS +   R  +  +T+  NI GI K      TFS    SS  ++ N
Sbjct:   34 ITAYVGFDPTADSLHVGNALTIMALRLLQKHGHRPIALMGGGTAKIGDPSFRDEARSLITNETIAHNIAGIEKSLRQFITFSDEDPSSGAILAN 127          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_BRAJA (Tyrosyl-tRNA synthetase OS=Bradyrhizobium japonicum GN=tyrS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.961e-13
Identity = 43/121 (35.54%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  241 VDTLERRGLLESITS-DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILN 588
            ++ L+ RG +   +  + L +LA+  E T   Y G+D TA SLH+GN L +++L W  + G++ + L+GG T  VGDPSGK   R    +  +E N   IR  F+ +     G S+ V+L+
Sbjct:    9 LNILQERGFIHQCSDFEGLDALAAKGEAT--AYVGYDCTARSLHIGNYLTMMMLHWLQQSGNKPITLMGGGTTMVGDPSGKDETRAMRTVAEIEANKESIRGVFAKVLRYGDGKSDAVMLD 127          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_BEII9 (Tyrosyl-tRNA synthetase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=tyrS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.868e-13
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  325 LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFS 552
            L  Y GFD TA SLH+G+L+ I++L W  + G + + L+GG T RVGDPSGK   R  L ++ +E N  GI++ FS
Sbjct:   39 LIAYIGFDCTAPSLHVGSLVQIMMLRWLQKTGGKPIVLMGGGTTRVGDPSGKDESRKILTLEEIEANKQGIKQVFS 114          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_WOLTR (Tyrosyl-tRNA synthetase OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=tyrS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.051e-13
Identity = 42/118 (35.59%), Postives = 68/118 (57.63%), Query Frame = 1
Query:  250 LERRGLLESITS-DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILN 588
            ++ RG L   T+ + L  L   N   +  Y GFD TA SLH+G+L+ I++L    + G++ + L+GG+T ++GDPSGK   R  L I+ + +NI GI+K    +     G +  +I+N
Sbjct:   11 IQERGYLCQCTNIEGLDQLLLQNNYVV-AYIGFDCTASSLHVGSLIQIMMLRHLQKFGYKPIVLLGGSTTKIGDPSGKDKARSVLPIEDINQNISGIKKALKKMVYFNDGKAGAIIVN 127          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_RICBR (Tyrosyl-tRNA synthetase OS=Rickettsia bellii (strain RML369-C) GN=tyrS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.051e-13
Identity = 37/106 (34.91%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  283 SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILN 588
            +D  R  + + E  +  Y GFD TA SLH+G+L+ I++L    + GH+ + +IGG T+++GDPSGK   R  +  + + +N  GI+K+ S       G S+ ++L+
Sbjct:   17 TDLERLTSITKESKIAAYIGFDCTATSLHIGSLMQIMILRLLQKHGHKPIVIIGGGTSKIGDPSGKDEARKTITKEDIARNAEGIKKSLSKFIKFGDGESDAIMLD 122          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_MYCPU (Tyrosyl-tRNA synthetase OS=Mycoplasma pulmonis GN=tyrS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.051e-13
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = 1
Query:  238 VVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRK 543
            +++ L++R +  +ITS+    L + +     +Y GFDPTA SLHLGN + ++ L  F   G + +A++GGAT+ +GDPS K  ER  L  +T+ +N   IRK
Sbjct:    9 LIEELKKRKVFNNITSEEKVDLITLDHG---IYVGFDPTAISLHLGNYIQMVNLKRFQNVGFKTIAILGGATSMIGDPSFKDSERKLLSNETILENKKHIRK 107          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_BLOPB (Tyrosyl-tRNA synthetase OS=Blochmannia pennsylvanicus (strain BPEN) GN=tyrS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.597e-13
Identity = 38/107 (35.51%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  220 HGRHPNVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIR 540
            + ++ +++  L  R L+  IT+     +     K++ +YCGFDPT++SLH+G+L+ ++ L  F   GH+ + L+GG T  +GDPS K  ER    I+T++K I  I+
Sbjct:    2 NNKNIDIIQLLYERDLIAQITNQEAL-IKILKSKSITLYCGFDPTSDSLHIGHLVPLLCLRQFQIFGHRPIILLGGGTGLIGDPSFKDSERKLNLIETVQKWIEKIK 107          
The following BLAST results are available for this feature:
BLAST of CX294898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
SYY_BORHD1.736e-1335.40Tyrosyl-tRNA synthetase OS=Borrelia hermsii (strai... [more]
SYY_LACJO2.267e-1332.20Tyrosyl-tRNA synthetase OS=Lactobacillus johnsonii... [more]
SYY_CAUSK2.267e-1340.00Tyrosyl-tRNA synthetase OS=Caulobacter sp. (strain... [more]
SYY_GLUOX2.961e-1342.55Tyrosyl-tRNA synthetase OS=Gluconobacter oxydans G... [more]
SYY_BRAJA2.961e-1335.54Tyrosyl-tRNA synthetase OS=Bradyrhizobium japonicu... [more]
SYY_BEII93.868e-1347.37Tyrosyl-tRNA synthetase OS=Beijerinckia indica sub... [more]
SYY_WOLTR5.051e-1335.59Tyrosyl-tRNA synthetase OS=Wolbachia sp. subsp. Br... [more]
SYY_RICBR5.051e-1334.91Tyrosyl-tRNA synthetase OS=Rickettsia bellii (stra... [more]
SYY_MYCPU5.051e-1339.22Tyrosyl-tRNA synthetase OS=Mycoplasma pulmonis GN=... [more]
SYY_BLOPB6.597e-1335.51Tyrosyl-tRNA synthetase OS=Blochmannia pennsylvani... [more]

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Properties
Property NameValue
Genbank descriptionC05057C04SK PhIFruit1 Citrus clementina cDNA clone C05057C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294898 ID=CX294898; Name=CX294898; organism=Citrus clementina; type=EST; length=596bp
AGCAAGTGCTGCTGACATCAAACGCAAATGGCAGCCGCAGCCGCTGCCGC
TGCGTCGAGAACTCTCCTCTGCTCCCACCAAAAACTCATAACCTCATCCA
TTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCACCGCATT
AAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCAACAACTCCAATC
CGACCCACAGACACAAACCCACGGCCGTCACCCGAATGTCGTCGACACTC
TCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCTCA
CTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGACCC
AACTGCCGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCTGT
CTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCGCC
ACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAACT
CGACATTGATACGTTAGAAAAGAACATTCTTGGAATTCGTAAGACTTTTT
CAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATATTATGAT
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