CX294898

Overview
NameCX294898
Unique NameCX294898
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_MAGSA (Tyrosyl-tRNA synthetase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=tyrS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.616e-13
Identity = 32/73 (43.84%), Postives = 48/73 (65.75%), Query Frame = 1
Query:  334 YCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFS 552
            Y GFD TA SLH+G L+ I++L W+ + GH+ + L+GG T R+GDP+GK   R  L  + +  N+ GI+  F+
Sbjct:   39 YIGFDCTATSLHVGGLMQIMLLRWWQKTGHKPIVLMGGGTTRIGDPTGKDESRKMLTDEVIATNMAGIKTVFT 111          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_STRCO (Tyrosyl-tRNA synthetase OS=Streptomyces coelicolor GN=tyrS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.125e-12
Identity = 43/122 (35.25%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  235 NVVDTLERRGLL-ESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDP---SGKSIERPELDIDTLEKNILGIRKTFSTIFGSSNVVILN 588
            ++VD L+ RGL  +S   D LR   +    T   YCGFDPTA SLH+G+L+ ++ +    + GH+ +AL+GGAT ++GDP   + +++  PE     +E+ + G  + F +  G +  V++N
Sbjct:    3 DIVDELKWRGLFAQSTDEDALRKALADGPVTF--YCGFDPTAPSLHVGHLVQVLTVRRLQQAGHRPLALVGGATGQIGDPRPTAERTLNSPETVAGWVER-LRGQIEPFLSFEGENAAVMVN 121          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_COREF (Tyrosyl-tRNA synthetase OS=Corynebacterium efficiens GN=tyrS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.125e-12
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDP 471
            N++D L  RGL+   T  +L +L  + ++ + +YCGFDPT  SLH G+L+ +++L  F + GH  + L GGAT  +GDP
Sbjct:    4 NIIDELSWRGLINQST--DLDALREATQEPITLYCGFDPTGPSLHAGHLVPLLMLRRFQQAGHNPIVLAGGATGMIGDP 80          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_ANAMM (Tyrosyl-tRNA synthetase OS=Anaplasma marginale (strain St. Maries) GN=tyrS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.125e-12
Identity = 42/119 (35.29%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  241 VDTLERRGLLESITSD----NLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFGSSNVVIL 585
            ++TL+ RG L   T D     L +L     + +  Y GFD TA SLH+G+L+ I+V+ +  + GH+ V L+GG T ++GDPSGK   R  L    +  N  GI  T +      + V++
Sbjct:    8 LNTLQVRGYLHQCTDDVALDELMAL-----QPITAYIGFDCTARSLHIGSLMQIMVMRYLQKFGHKIVVLLGGGTTKIGDPSGKDKARAMLSEAEIAANKAGILATINKFLNQGDGVVI 121          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_STRA5 (Tyrosyl-tRNA synthetase OS=Streptococcus agalactiae serotype V GN=tyrS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 1
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER 492
            N+ D L+ RGL+   T ++    A   E ++  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K +ER
Sbjct:    2 NIFDELKERGLVFQTTDEDALRKALE-EGSVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDVER 86          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_STRA3 (Tyrosyl-tRNA synthetase OS=Streptococcus agalactiae serotype III GN=tyrS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 1
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER 492
            N+ D L+ RGL+   T ++    A   E ++  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K +ER
Sbjct:    2 NIFDELKERGLVFQTTDEDALRKALE-EGSVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDVER 86          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_MYCHJ (Tyrosyl-tRNA synthetase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=tyrS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 43/104 (41.35%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  250 LERRGLLESITSDNLRSLASSNEKTLK------VYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRK 543
            +E++  L  + + N+    SS EK         +Y GFDPTA SLHLGN + I +L    + G + +A+IGGAT  +GDPS  S ER  LD  TL  N   I+K
Sbjct:    4 IEKQEFLTELKTRNILKDISSPEKFFNLKPDQGIYIGFDPTATSLHLGNYISISLLKRLQKIGIKVLAVIGGATGMIGDPSFSSKERKLLDFKTLNANKEKIKK 107          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_MYCH7 (Tyrosyl-tRNA synthetase OS=Mycoplasma hyopneumoniae (strain 7448) GN=tyrS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 43/104 (41.35%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  250 LERRGLLESITSDNLRSLASSNEKTLK------VYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRK 543
            +E++  L  + + N+    SS EK         +Y GFDPTA SLHLGN + I +L    + G + +A+IGGAT  +GDPS  S ER  LD  TL  N   I+K
Sbjct:    4 IEKQEFLAELKTRNILKDISSPEKFFNLKPDQGIYIGFDPTATSLHLGNYISISLLKRLQKIGIKVLAVIGGATGMIGDPSFSSKERKLLDFKTLNANKEKIKK 107          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_MYCH2 (Tyrosyl-tRNA synthetase OS=Mycoplasma hyopneumoniae (strain 232) GN=tyrS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 43/104 (41.35%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  250 LERRGLLESITSDNLRSLASSNEKTLK------VYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRK 543
            +E++  L  + + N+    SS EK         +Y GFDPTA SLHLGN + I +L    + G + +A+IGGAT  +GDPS  S ER  LD  TL  N   I+K
Sbjct:    4 IEKQEFLTELKTRNILKDISSPEKFFNLKPDQGIYIGFDPTATSLHLGNYISISLLKRLQKIGIKVLAVIGGATGMIGDPSFSSKERKLLDFKTLNANKEKIKK 107          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_AMOA5 (Tyrosyl-tRNA synthetase OS=Amoebophilus asiaticus (strain 5a2) GN=tyrS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 1
Query:  241 VDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKN---ILGIRKTFSTIFGSSNVVIL 585
            +  L  RG++  IT      L    ++ +  Y GFDPTA SLH+GNL  I++L  F   GH+ +A++GGAT  +GDPS KS ER  L  + L  N   I+   K F     S+N   L
Sbjct:    5 IANLRWRGMIHDITPGLEAQL---QKEMITGYIGFDPTAPSLHVGNLATIMLLKHFQLAGHKPIAVVGGATGMIGDPSFKSTERKFLSEEELLHNQSCIMKQLKCFLDFSSSANTAEL 119          
The following BLAST results are available for this feature:
BLAST of CX294898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
SYY_MAGSA8.616e-1343.84Tyrosyl-tRNA synthetase OS=Magnetospirillum magnet... [more]
SYY_STRCO1.125e-1235.25Tyrosyl-tRNA synthetase OS=Streptomyces coelicolor... [more]
SYY_COREF1.125e-1241.77Tyrosyl-tRNA synthetase OS=Corynebacterium efficie... [more]
SYY_ANAMM1.125e-1235.29Tyrosyl-tRNA synthetase OS=Anaplasma marginale (st... [more]
SYY_STRA51.470e-1243.02Tyrosyl-tRNA synthetase OS=Streptococcus agalactia... [more]
SYY_STRA31.470e-1243.02Tyrosyl-tRNA synthetase OS=Streptococcus agalactia... [more]
SYY_MYCHJ1.470e-1241.35Tyrosyl-tRNA synthetase OS=Mycoplasma hyopneumonia... [more]
SYY_MYCH71.470e-1241.35Tyrosyl-tRNA synthetase OS=Mycoplasma hyopneumonia... [more]
SYY_MYCH21.470e-1241.35Tyrosyl-tRNA synthetase OS=Mycoplasma hyopneumonia... [more]
SYY_AMOA51.470e-1238.98Tyrosyl-tRNA synthetase OS=Amoebophilus asiaticus ... [more]

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Properties
Property NameValue
Genbank descriptionC05057C04SK PhIFruit1 Citrus clementina cDNA clone C05057C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294898 ID=CX294898; Name=CX294898; organism=Citrus clementina; type=EST; length=596bp
AGCAAGTGCTGCTGACATCAAACGCAAATGGCAGCCGCAGCCGCTGCCGC
TGCGTCGAGAACTCTCCTCTGCTCCCACCAAAAACTCATAACCTCATCCA
TTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCACCGCATT
AAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCAACAACTCCAATC
CGACCCACAGACACAAACCCACGGCCGTCACCCGAATGTCGTCGACACTC
TCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCTCA
CTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGACCC
AACTGCCGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCTGT
CTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCGCC
ACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAACT
CGACATTGATACGTTAGAAAAGAACATTCTTGGAATTCGTAAGACTTTTT
CAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATATTATGAT
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