CX294898

Overview
NameCX294898
Unique NameCX294898
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig593 contig Ccv1_Contig593:1..596. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_ANAD2 (Tyrosyl-tRNA synthetase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=tyrS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.531e-17
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 1
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIR 540
            N+++ L  R L+   T      LA      +  Y GFDPTA+SLH+G+LL ++ L+W  RCG   + ++GG T  VGDPSGK  ERP L ++ +++N+  IR
Sbjct:    3 NLLEALVSRSLVHDQTPGLQARLAQG---PITGYVGFDPTADSLHVGHLLAVMSLAWLQRCGGTPIIVVGGGTGMVGDPSGKRSERPVLSVEEIDRNVAAIR 101          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_SYNAS (Tyrosyl-tRNA synthetase OS=Syntrophus aciditrophicus (strain SB) GN=tyrS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.836e-17
Identity = 45/106 (42.45%), Postives = 65/106 (61.32%), Query Frame = 1
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFS 552
            NV D    RG +E +T +N  ++  + E  L  Y GFDPTA SLH+G+L+ I+ L    R GH ++AL+GG TA +GDPSGK+  R  L  + +E N   +R+ F+
Sbjct:    5 NVYDVFMERGFIEQVTDEN--AVRKALEAPLACYIGFDPTARSLHIGSLVPIMALIHLQRHGHTSIALVGGGTALIGDPSGKTEMRQILTREKIELNATCMRRQFA 108          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_RHOS4 (Tyrosyl-tRNA synthetase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=tyrS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.836e-17
Identity = 48/127 (37.80%), Postives = 79/127 (62.20%), Query Frame = 1
Query:  229 HP--NVVDTLERRGLLESITSDNLRSLASSNEK-TLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILN 588
            HP  + +  ++ RG L   T  ++++L  +  K  +  Y G+D TA SLH+G+LL I++L W  + GH+ + L+GG T +VGDPS +S ERP L  D +++NI G+RK F+       G+++ ++LN
Sbjct:    4 HPKSDFLRVMQERGYLADCT--DMQALDEALSKGVVPAYIGYDATAASLHVGHLLNIMMLRWLQKTGHKPITLMGGGTTKVGDPSFRSEERPLLTPDRIDENIEGMRKVFARYLSYGEGATDALMLN 128          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_LISIN (Tyrosyl-tRNA synthetase OS=Listeria innocua GN=tyrS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.836e-17
Identity = 42/110 (38.18%), Postives = 65/110 (59.09%), Query Frame = 1
Query:  235 NVVDTLERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF 561
            N++D LE RG +   T +  LR      EK + +YCG DP+ +S+H+G+L+  ++L  F   GH+ + L+GGAT  +GDPSGK  ER    ++ + KN+  +R     IF
Sbjct:    2 NIIDELEWRGAIYQQTDEEGLRKWVE--EKQISLYCGIDPSGDSMHIGHLIPFMILRRFQNAGHRPIILVGGATGTIGDPSGKKEERKLQSMEQISKNVESLRVQLGKIF 109          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_ANADE (Tyrosyl-tRNA synthetase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=tyrS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.836e-17
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 1
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIR 540
            N+++ L  R L+   T      LA      +  Y GFDPTA+SLH+G+LL ++ L+W  RCG   + ++GG T  VGDPSGK  ERP L ++ +++N+  IR
Sbjct:    3 NLLEALVPRSLVHDQTPGLQARLAQG---PITGYVGFDPTADSLHVGHLLAVMSLAWLQRCGGTPIIVVGGGTGMVGDPSGKRSERPVLSVEEIDRNVAAIR 101          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY2_BACC1 (Tyrosyl-tRNA synthetase 2 OS=Bacillus cereus (strain ATCC 10987) GN=tyrS2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.836e-17
Identity = 45/122 (36.89%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  235 NVVDTLERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF---GSSNVVILN 588
            N++D LE RG +   T +  LR L    EK + +YCG DPT +S+H+G+L+  +++  F   GH  V LIGGAT  +GDPSG+  ER    ++ ++ N+  +      +F   G+S V ++N
Sbjct:    2 NIIDELEWRGAINQQTDEEGLRKLVE--EKKISLYCGVDPTGDSMHIGHLIPFMMMKRFQLAGHHPVILIGGATGTIGDPSGRQSERQLQTLEVVQHNVDALTAQMKKLFDFGGNSEVKMVN 121          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY1_BACHK (Tyrosyl-tRNA synthetase 1 OS=Bacillus thuringiensis subsp. konkukian GN=tyrS1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.836e-17
Identity = 46/114 (40.35%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  238 VVDTLERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFGSSNV 576
            ++  LE RGL+   T ++ L  L    ++++K+YCGFDPTA+SLH+G++L +++L  F   GHQ +AL+GG T  +GDPSGK  ER     DT+      I+   S      NV
Sbjct:    3 ILQDLEFRGLINQQTDAEGLEQLLE--KESVKLYCGFDPTADSLHIGHMLPVLMLRRFQLAGHQPIALVGGGTGMIGDPSGKKAERTLNTKDTVAYYTESIKNQLSNFLEFENV 114          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY1_BACCZ (Tyrosyl-tRNA synthetase 1 OS=Bacillus cereus (strain ZK / E33L) GN=tyrS1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.836e-17
Identity = 46/114 (40.35%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  238 VVDTLERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFGSSNV 576
            ++  LE RGL+   T ++ L  L    ++++K+YCGFDPTA+SLH+G++L +++L  F   GHQ +AL+GG T  +GDPSGK  ER     DT+      I+   S      NV
Sbjct:    3 ILQDLEFRGLINQQTDAEGLEQLLE--KESVKLYCGFDPTADSLHIGHMLPVLMLRRFQLAGHQPIALVGGGTGMIGDPSGKKAERTLNTKDTVAYYTESIKNQLSNFLEFENV 114          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY1_BACC1 (Tyrosyl-tRNA synthetase 1 OS=Bacillus cereus (strain ATCC 10987) GN=tyrS1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.836e-17
Identity = 46/114 (40.35%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  238 VVDTLERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFGSSNV 576
            ++  LE RGL+   T ++ L  L    ++++K+YCGFDPTA+SLH+G++L +++L  F   GHQ +AL+GG T  +GDPSGK  ER     DT+      I+   S      NV
Sbjct:    3 ILQDLEFRGLINQQTDAEGLEQLLE--KESVKLYCGFDPTADSLHIGHMLPVLMLRRFQLAGHQPIALVGGGTGMIGDPSGKKAERTLNTKDTVAYYTESIKNQLSNFLEFENV 114          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY1_BACAN (Tyrosyl-tRNA synthetase 1 OS=Bacillus anthracis GN=tyrS1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.836e-17
Identity = 46/114 (40.35%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  238 VVDTLERRGLLESIT-SDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFGSSNV 576
            ++  LE RGL+   T ++ L  L    ++++K+YCGFDPTA+SLH+G++L +++L  F   GHQ +AL+GG T  +GDPSGK  ER     DT+      I+   S      NV
Sbjct:    3 ILQDLEFRGLINQQTDAEGLEQLLE--KESVKLYCGFDPTADSLHIGHMLPVLMLRRFQLAGHQPIALVGGGTGMIGDPSGKKAERTLNTKDTVAYYTESIKNQLSNFLEFENV 114          
The following BLAST results are available for this feature:
BLAST of CX294898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
SYY_ANAD27.531e-1741.18Tyrosyl-tRNA synthetase OS=Anaeromyxobacter dehalo... [more]
SYY_SYNAS9.836e-1742.45Tyrosyl-tRNA synthetase OS=Syntrophus aciditrophic... [more]
SYY_RHOS49.836e-1737.80Tyrosyl-tRNA synthetase OS=Rhodobacter sphaeroides... [more]
SYY_LISIN9.836e-1738.18Tyrosyl-tRNA synthetase OS=Listeria innocua GN=tyr... [more]
SYY_ANADE9.836e-1741.18Tyrosyl-tRNA synthetase OS=Anaeromyxobacter dehalo... [more]
SYY2_BACC19.836e-1736.89Tyrosyl-tRNA synthetase 2 OS=Bacillus cereus (stra... [more]
SYY1_BACHK9.836e-1740.35Tyrosyl-tRNA synthetase 1 OS=Bacillus thuringiensi... [more]
SYY1_BACCZ9.836e-1740.35Tyrosyl-tRNA synthetase 1 OS=Bacillus cereus (stra... [more]
SYY1_BACC19.836e-1740.35Tyrosyl-tRNA synthetase 1 OS=Bacillus cereus (stra... [more]
SYY1_BACAN9.836e-1740.35Tyrosyl-tRNA synthetase 1 OS=Bacillus anthracis GN... [more]

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Properties
Property NameValue
Genbank descriptionC05057C04SK PhIFruit1 Citrus clementina cDNA clone C05057C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294898 ID=CX294898; Name=CX294898; organism=Citrus clementina; type=EST; length=596bp
AGCAAGTGCTGCTGACATCAAACGCAAATGGCAGCCGCAGCCGCTGCCGC
TGCGTCGAGAACTCTCCTCTGCTCCCACCAAAAACTCATAACCTCATCCA
TTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCACCGCATT
AAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCAACAACTCCAATC
CGACCCACAGACACAAACCCACGGCCGTCACCCGAATGTCGTCGACACTC
TCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCTCA
CTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGACCC
AACTGCCGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCTGT
CTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCGCC
ACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAACT
CGACATTGATACGTTAGAAAAGAACATTCTTGGAATTCGTAAGACTTTTT
CAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATATTATGAT
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