CX294898

Overview
NameCX294898
Unique NameCX294898
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_STRPM (Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes serotype M28 GN=tyrS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER 492
            N+ + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER
Sbjct:    2 NIFEELKARGLVFQ-TTDEQALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAER 86
[Close]
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_STRPG (Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=tyrS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER 492
            N+ + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER
Sbjct:    2 NIFEELKARGLVFQ-TTDEQALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAER 86
[Close]
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_STRPF (Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=tyrS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER 492
            N+ + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER
Sbjct:    2 NIFEELKARGLVFQ-TTDEQALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAER 86
[Close]
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_STRPD (Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=tyrS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER 492
            N+ + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER
Sbjct:    2 NIFEELKARGLVFQ-TTDEQALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAER 86
[Close]
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_STRPC (Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=tyrS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER 492
            N+ + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER
Sbjct:    2 NIFEELKARGLVFQ-TTDEQALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAER 86
[Close]
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_STRPB (Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=tyrS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER 492
            N+ + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER
Sbjct:    2 NIFEELKARGLVFQ-TTDEQALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAER 86
[Close]
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_STRP8 (Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes serotype M18 GN=tyrS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER 492
            N+ + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER
Sbjct:    2 NIFEELKARGLVFQ-TTDEQALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAER 86
[Close]
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_STRP6 (Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes serotype M6 GN=tyrS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER 492
            N+ + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER
Sbjct:    2 NIFEELKARGLVFQ-TTDEQALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAER 86
[Close]
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_STRP3 (Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes serotype M3 GN=tyrS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER 492
            N+ + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER
Sbjct:    2 NIFEELKARGLVFQ-TTDEQALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAER 86
[Close]
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_STRP1 (Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes serotype M1 GN=tyrS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER 492
            N+ + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER
Sbjct:    2 NIFEELKARGLVFQ-TTDEQALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAER 86
The following BLAST results are available for this feature:
BLAST of CX294898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
SYY_STRPM1.244e-1141.86Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes ... [more]
SYY_STRPG1.244e-1141.86Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes ... [more]
SYY_STRPF1.244e-1141.86Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes ... [more]
SYY_STRPD1.244e-1141.86Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes ... [more]
SYY_STRPC1.244e-1141.86Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes ... [more]
SYY_STRPB1.244e-1141.86Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes ... [more]
SYY_STRP81.244e-1141.86Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes ... [more]
SYY_STRP61.244e-1141.86Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes ... [more]
SYY_STRP31.244e-1141.86Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes ... [more]
SYY_STRP11.244e-1141.86Tyrosyl-tRNA synthetase OS=Streptococcus pyogenes ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05057C04SK PhIFruit1 Citrus clementina cDNA clone C05057C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294898 ID=CX294898; Name=CX294898; organism=Citrus clementina; type=EST; length=596bp
AGCAAGTGCTGCTGACATCAAACGCAAATGGCAGCCGCAGCCGCTGCCGC
TGCGTCGAGAACTCTCCTCTGCTCCCACCAAAAACTCATAACCTCATCCA
TTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCACCGCATT
AAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCAACAACTCCAATC
CGACCCACAGACACAAACCCACGGCCGTCACCCGAATGTCGTCGACACTC
TCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCTCA
CTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGACCC
AACTGCCGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCTGT
CTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCGCC
ACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAACT
CGACATTGATACGTTAGAAAAGAACATTCTTGGAATTCGTAAGACTTTTT
CAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATATTATGAT
back to top