CX294898

Overview
NameCX294898
Unique NameCX294898
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_STRGC (Tyrosyl-tRNA synthetase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=tyrS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 40/113 (35.40%), Postives = 60/113 (53.10%), Query Frame = 1
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFGSSN 573
            ++ D L+ RGL+   T+D         E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     +T+E  +  I+   + +    N
Sbjct:    2 HIFDELKERGLIFQ-TTDEEALRQELEEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKETVEGWVKSIQGQLAGLLDFEN 113          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYYM_NEUCR (Tyrosyl-tRNA synthetase, mitochondrial OS=Neurospora crassa GN=cyt-18 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 36/105 (34.29%), Postives = 53/105 (50.48%), Query Frame = 1
Query:  223 GRHPNVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGI 537
            G+  N  D  E RG ++               + +  Y G DPTA SLH+G+LL ++ L W    G++A  LIGG+TA++GDP+G+   R  L       N+  I
Sbjct:   62 GKKQNTWDLFEERGYVKDTAGTKEHIAELMRTRRIGAYVGIDPTAPSLHVGHLLPLMPLFWMYLEGYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKI 166          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_TREPA (Tyrosyl-tRNA synthetase OS=Treponema pallidum GN=tyrS PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 38/90 (42.22%), Postives = 50/90 (55.56%), Query Frame = 1
Query:  250 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLE 519
            L+ RG +   T  +  S A  +   L  Y G DPT  SLH+G++L +  L      GH+   LIGG TAR+GDPSGK+  R  LD  TL+
Sbjct:    8 LQARGFIRQCTDLSALS-ARMDAGPLTFYVGVDPTGSSLHVGHMLPMFALKHLCDAGHRGCVLIGGGTARIGDPSGKTSMRKMLDYATLD 96          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_STRU0 (Tyrosyl-tRNA synthetase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=tyrS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER 492
            N+ + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER
Sbjct:    2 NIFEELKARGLVFQ-TTDEEALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAER 86          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_STRS7 (Tyrosyl-tRNA synthetase OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=tyrS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER 492
            N+ + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER
Sbjct:    2 NIFEELKARGLVFQ-TTDEEALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAER 86          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_STREM (Tyrosyl-tRNA synthetase OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=tyrS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER 492
            N+ + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER
Sbjct:    2 NIFEELKARGLVFQ-TTDEEALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAER 86          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_STRE4 (Tyrosyl-tRNA synthetase OS=Streptococcus equi subsp. equi (strain 4047) GN=tyrS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1
Query:  235 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIER 492
            N+ + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER
Sbjct:    2 NIFEELKARGLVFQ-TTDEEALVKALTEGQVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAER 86          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_LEPIN (Tyrosyl-tRNA synthetase OS=Leptospira interrogans GN=tyrS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 37/90 (41.11%), Postives = 54/90 (60.00%), Query Frame = 1
Query:  256 RRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKN 525
            RRG ++ I+ + L+S     +KTLK+  GFDPTA  LHLG+ + +  L  F   GH+   L+G  TA +GDP+GKS  R  L  + + +N
Sbjct:   11 RRGTVDLISEEELKSKLQK-KKTLKIKAGFDPTAPDLHLGHFVQLKKLKHFQDLGHEVSFLLGDFTAMIGDPTGKSETRKRLSREEVLEN 99          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_LEPIC (Tyrosyl-tRNA synthetase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=tyrS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 37/90 (41.11%), Postives = 54/90 (60.00%), Query Frame = 1
Query:  256 RRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKN 525
            RRG ++ I+ + L+S     +KTLK+  GFDPTA  LHLG+ + +  L  F   GH+   L+G  TA +GDP+GKS  R  L  + + +N
Sbjct:   11 RRGTVDLISEEELKSKLQK-KKTLKIKAGFDPTAPDLHLGHFVQLKKLKHFQDLGHEVSFLLGDFTAMIGDPTGKSETRKRLSREEVLEN 99          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_COXBU (Tyrosyl-tRNA synthetase OS=Coxiella burnetii GN=tyrS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:  256 RRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFST 555
            +RG +E I  D L S  +  EK L++  GFDPTA  +HLG+ + +  L  F   GH+ + LIG  TA +GDP+GK+I R  L  + + +N     KT+ T
Sbjct:   12 KRGAVEIIHEDELLSRLAE-EKPLRIKLGFDPTAPDIHLGHTVVLNKLRQFQTLGHEVIFLIGDFTAMIGDPTGKNITRQPLTREIVMEN----TKTYET 106          
The following BLAST results are available for this feature:
BLAST of CX294898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
SYY_STRGC1.244e-1135.40Tyrosyl-tRNA synthetase OS=Streptococcus gordonii ... [more]
SYYM_NEUCR1.244e-1134.29Tyrosyl-tRNA synthetase, mitochondrial OS=Neurospo... [more]
SYY_TREPA1.625e-1142.22Tyrosyl-tRNA synthetase OS=Treponema pallidum GN=t... [more]
SYY_STRU01.625e-1141.86Tyrosyl-tRNA synthetase OS=Streptococcus uberis (s... [more]
SYY_STRS71.625e-1141.86Tyrosyl-tRNA synthetase OS=Streptococcus equi subs... [more]
SYY_STREM1.625e-1141.86Tyrosyl-tRNA synthetase OS=Streptococcus equi subs... [more]
SYY_STRE41.625e-1141.86Tyrosyl-tRNA synthetase OS=Streptococcus equi subs... [more]
SYY_LEPIN1.625e-1141.11Tyrosyl-tRNA synthetase OS=Leptospira interrogans ... [more]
SYY_LEPIC1.625e-1141.11Tyrosyl-tRNA synthetase OS=Leptospira interrogans ... [more]
SYY_COXBU1.625e-1140.00Tyrosyl-tRNA synthetase OS=Coxiella burnetii GN=ty... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05057C04SK PhIFruit1 Citrus clementina cDNA clone C05057C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294898 ID=CX294898; Name=CX294898; organism=Citrus clementina; type=EST; length=596bp
AGCAAGTGCTGCTGACATCAAACGCAAATGGCAGCCGCAGCCGCTGCCGC
TGCGTCGAGAACTCTCCTCTGCTCCCACCAAAAACTCATAACCTCATCCA
TTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCACCGCATT
AAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCAACAACTCCAATC
CGACCCACAGACACAAACCCACGGCCGTCACCCGAATGTCGTCGACACTC
TCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCTCA
CTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGACCC
AACTGCCGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCTGT
CTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCGCC
ACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAACT
CGACATTGATACGTTAGAAAAGAACATTCTTGGAATTCGTAAGACTTTTT
CAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATATTATGAT
back to top