CX294898

Overview
NameCX294898
Unique NameCX294898
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_EHRCR (Tyrosyl-tRNA synthetase OS=Ehrlichia chaffeensis (strain Arkansas) GN=tyrS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 30/75 (40.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:  313 NEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGI 537
            +++ +  Y GFD TA+SLH+G+L+ +++L    + GH+ + L+G  T ++GDPSGK   R  L    +E+N LGI
Sbjct:   31 SQQCVHAYIGFDCTAKSLHVGSLIQVMILRHLQKFGHKPIILLGDGTTKIGDPSGKDKSRAMLSASEIEENALGI 105          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY1_STRT2 (Tyrosyl-tRNA synthetase 1 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=tyrS1 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 42/121 (34.71%), Postives = 65/121 (53.72%), Query Frame = 1
Query:  238 VVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILN 588
            + + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     +T+E  +  I+   S       G +  V++N
Sbjct:    3 IFEELKARGLIFQ-TTDEEALVKAFEEGPVSFYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKETVEGWVEKIQGQLSRFLDFENGDNKAVMVN 122          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY1_STRT1 (Tyrosyl-tRNA synthetase 1 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=tyrS1 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.122e-11
Identity = 42/121 (34.71%), Postives = 65/121 (53.72%), Query Frame = 1
Query:  238 VVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILN 588
            + + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS K  ER     +T+E  +  I+   S       G +  V++N
Sbjct:    3 IFEELKARGLIFQ-TTDEEALVKAFEEGPVSFYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDAERSLQTKETVEGWVEKIQGQLSRFLDFENGDNKAVMVN 122          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_NOCFA (Tyrosyl-tRNA synthetase OS=Nocardia farcinica GN=tyrS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 1
Query:  235 NVVDTLERRGLLESITS-DNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDP 471
            +++D L  RGL+   T  D LR+  ++   TL  Y GFDPTA SLH G+L+ ++ L  F R GH+ + L GGAT  +GDP
Sbjct:    4 DIIDELTWRGLIAQSTDLDALRAALAAGPLTL--YAGFDPTAASLHAGHLVPLLALKRFQRAGHRPIVLAGGATGLIGDP 81          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_CHLPN (Tyrosyl-tRNA synthetase OS=Chlamydia pneumoniae GN=tyrS PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 38/95 (40.00%), Postives = 52/95 (54.74%), Query Frame = 1
Query:  241 VDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKN 525
            + +L+ R +LE+ T+        S E  +  Y GFDPTA +LH+G+ +GI  L      G   +AL+GGAT  VGDPSGK  ER  L    +  N
Sbjct:    5 LQSLQERNILENFTAG-----LESVEGPIAAYLGFDPTAPALHIGHWIGICFLKRLAALGITPIALVGGATGMVGDPSGKQSERSLLQTSEVFDN 94          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_BORGA (Tyrosyl-tRNA synthetase OS=Borrelia garinii GN=tyrS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 40/112 (35.71%), Postives = 60/112 (53.57%), Query Frame = 1
Query:  241 VDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTI--FGSS 570
            ++ L +RG L+  TS  + S     EK +  Y G D T+ SLH+G+L+  + +    + GH  + LIG +T ++GDPSGKS  R  L  + +  N L I+     I  F SS
Sbjct:    5 LNLLYKRGFLKQCTSLKVLSDLMDREKIV-FYAGVDTTSSSLHIGHLIPFLAMMHLRQHGHMPIVLIGDSTTKIGDPSGKSEMRKILSSEVINNNALSIKNQLQKITRFSSS 115          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_ACIAD (Tyrosyl-tRNA synthetase OS=Acinetobacter sp. (strain ADP1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 39/92 (42.39%), Postives = 53/92 (57.61%), Query Frame = 1
Query:  250 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKN 525
            L +RG  E I+ ++L      N + L++  GFDPTA  LHLG+ + I  L  F   GH+   LIG  TA +GDP+GKS  RP L  + +E N
Sbjct:   13 LIQRGTHEIISEEDLLKKLKEN-RPLRIKAGFDPTAPDLHLGHTVLINKLKAFQDLGHEVTFLIGDYTAMIGDPTGKSATRPPLTREQVEAN 103          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_STRGG (Tyrosyl-tRNA synthetase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=tyrS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.620e-11
Identity = 43/122 (35.25%), Postives = 69/122 (56.56%), Query Frame = 1
Query:  235 NVVDTLERRGLL-ESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLE---KNILGIRKTFSTIFGSSNVVILN 588
            ++VD L+ RGL  +S   D LR   +    T   YCGFDPTA SLH+G+L+ ++ +    + G + +AL+GGAT ++GDP   + ER   D +T+    + + G  + F T  G +   ++N
Sbjct:    3 DIVDELKWRGLFAQSTDEDALRKALADGPVTF--YCGFDPTAASLHVGHLVQVLTMRRLQQAGLKPLALVGGATGQIGDPR-PTAERTLNDPETIAAWVQRLRGQIEPFLTFEGPNAATMVN 121          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_STRAW (Tyrosyl-tRNA synthetase OS=Streptomyces avermitilis GN=tyrS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.620e-11
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  235 NVVDTLERRGLLE-SITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKS 483
            ++VD L+ RGL+  S   D LR   +    T   YCGFDPTA SLHLGNL+ I+ +    + G++ + L+GGAT  +GDP   S
Sbjct:    3 DIVDELKWRGLVALSTDEDALRKAFADGPVTF--YCGFDPTAPSLHLGNLVQILTMRRIQQAGNRPLGLVGGATGLIGDPKPNS 84          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_MYCS5 (Tyrosyl-tRNA synthetase OS=Mycoplasma synoviae (strain 53) GN=tyrS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.620e-11
Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  238 VVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKN 525
            V+  L  R +L+ I+++       S  K   VY GFDPTA+SLHLGN + I+ L  F +    A+A++GGAT  +GDPS +S ER  L  + L KN
Sbjct:    4 VLTELRDREILKDISNEEK---FLSLPKNSGVYVGFDPTADSLHLGNYVQIVNLIRFKKHNWNALAVLGGATGMIGDPSFRSTERVLLSTEELLKN 96          
The following BLAST results are available for this feature:
BLAST of CX294898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
SYY_EHRCR2.122e-1140.00Tyrosyl-tRNA synthetase OS=Ehrlichia chaffeensis (... [more]
SYY1_STRT22.122e-1134.71Tyrosyl-tRNA synthetase 1 OS=Streptococcus thermop... [more]
SYY1_STRT12.122e-1134.71Tyrosyl-tRNA synthetase 1 OS=Streptococcus thermop... [more]
SYY_NOCFA2.772e-1145.00Tyrosyl-tRNA synthetase OS=Nocardia farcinica GN=t... [more]
SYY_CHLPN2.772e-1140.00Tyrosyl-tRNA synthetase OS=Chlamydia pneumoniae GN... [more]
SYY_BORGA2.772e-1135.71Tyrosyl-tRNA synthetase OS=Borrelia garinii GN=tyr... [more]
SYY_ACIAD2.772e-1142.39Tyrosyl-tRNA synthetase OS=Acinetobacter sp. (stra... [more]
SYY_STRGG3.620e-1135.25Tyrosyl-tRNA synthetase OS=Streptomyces griseus su... [more]
SYY_STRAW3.620e-1144.05Tyrosyl-tRNA synthetase OS=Streptomyces avermitili... [more]
SYY_MYCS53.620e-1142.71Tyrosyl-tRNA synthetase OS=Mycoplasma synoviae (st... [more]

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Properties
Property NameValue
Genbank descriptionC05057C04SK PhIFruit1 Citrus clementina cDNA clone C05057C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294898 ID=CX294898; Name=CX294898; organism=Citrus clementina; type=EST; length=596bp
AGCAAGTGCTGCTGACATCAAACGCAAATGGCAGCCGCAGCCGCTGCCGC
TGCGTCGAGAACTCTCCTCTGCTCCCACCAAAAACTCATAACCTCATCCA
TTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCACCGCATT
AAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCAACAACTCCAATC
CGACCCACAGACACAAACCCACGGCCGTCACCCGAATGTCGTCGACACTC
TCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCTCA
CTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGACCC
AACTGCCGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCTGT
CTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCGCC
ACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAACT
CGACATTGATACGTTAGAAAAGAACATTCTTGGAATTCGTAAGACTTTTT
CAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATATTATGAT
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