CX294898

Overview
NameCX294898
Unique NameCX294898
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig593 contig Ccv1_Contig593:1..596. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_MYCTU (Tyrosyl-tRNA synthetase OS=Mycobacterium tuberculosis GN=tyrS PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  238 VVDTLERRGLLESITSDNLRSLASSNEK-TLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDP 471
            ++D L  RGL+   T  +L +LA+  ++  + VY GFDPTA SLH G+L+ ++ L  F R GH+ + L GGAT  +GDP
Sbjct:    5 ILDELSWRGLIAQST--DLDTLAAEAQRGPMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRAGHRPIVLAGGATGMIGDP 81          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_MYCBO (Tyrosyl-tRNA synthetase OS=Mycobacterium bovis GN=tyrS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  238 VVDTLERRGLLESITSDNLRSLASSNEK-TLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDP 471
            ++D L  RGL+   T  +L +LA+  ++  + VY GFDPTA SLH G+L+ ++ L  F R GH+ + L GGAT  +GDP
Sbjct:    5 ILDELSWRGLIAQST--DLDTLAAEAQRGPMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRAGHRPIVLAGGATGMIGDP 81          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_DESPS (Tyrosyl-tRNA synthetase OS=Desulfotalea psychrophila GN=tyrS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  232 PNVVDTLE--RRGLLESITSDNLRSLASSNEKT---LKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKN 525
            P++ + +E   RG ++ I+ D L      + +T   LKV  GFDPTA  LHLG+ + +  L  F   GHQ + LIG  T  +GDP+GKS  R  L ++ + +N
Sbjct:    4 PSLEEQIELIERGCVDCISRDELVKKLKKSAETGIPLKVKAGFDPTAPDLHLGHTVLLQKLKQFQDLGHQVIFLIGDFTGMIGDPTGKSETRKALTVEQVAEN 106          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_BORBZ (Tyrosyl-tRNA synthetase OS=Borrelia burgdorferi (strain ZS7) GN=tyrS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  250 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTI 558
            L +RG L+  TS  + S     EK +  Y G D T+ SLH+G+L+  + +    + GH  + LIG +TA++GDPSGKS  R  L  + +  N L I+     I
Sbjct:    8 LHKRGFLKQCTSLKVLSDLMDREKIV-FYAGVDATSSSLHIGHLIPFLAMMHLRQHGHMPIVLIGDSTAKIGDPSGKSEMRKILSSEEIGNNALLIKNQLQRI 109          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_BORBU (Tyrosyl-tRNA synthetase OS=Borrelia burgdorferi GN=tyrS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  250 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTI 558
            L +RG L+  TS  + S     EK +  Y G D T+ SLH+G+L+  + +    + GH  + LIG +TA++GDPSGKS  R  L  + +  N L I+     I
Sbjct:    8 LHKRGFLKQCTSLKVLSDLMDREKIV-FYAGVDATSSSLHIGHLIPFLAMMHLRQHGHMPIVLIGDSTAKIGDPSGKSEMRKILSSEEIGNNALLIKNQLQRI 109          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_BORAP (Tyrosyl-tRNA synthetase OS=Borrelia afzelii (strain PKo) GN=tyrS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 36/106 (33.96%), Postives = 57/106 (53.77%), Query Frame = 1
Query:  241 VDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTI 558
            ++ L +RG L+  TS  + S     EK +  Y G D T+ SLH+G+L+  + +    + GH  + LIG +T ++GDPSGKS  R  L ++ +  N   I+     I
Sbjct:    5 LNLLHKRGFLKQCTSLKVLSDLMDREKIV-FYAGVDATSSSLHIGHLIPFLAMMHLRQHGHIPIVLIGDSTTKIGDPSGKSEMRKILSLEEISNNAFSIKNQLQRI 109          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_STRTD (Tyrosyl-tRNA synthetase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=tyrS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 1
Query:  238 VVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF----GSSNVVILN 588
            + + L+ RGL+   T+D    + +  E  +  Y G+DPTA+SLHLG+L+ I+        GH+  AL+GGAT  +GDPS    ER     +T+E  +  I+   S       G +  V++N
Sbjct:    3 IFEELKARGLIFQ-TTDEEALVKAFEEGPVSFYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFNDAERSLQTKETVEGWVEKIQGQLSRFLDFENGDNKAVMVN 122          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_BORRA (Tyrosyl-tRNA synthetase OS=Borrelia recurrentis (strain A1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  250 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFGSSN 573
            L++RG L+  T+    S     EK +  Y G D T+ SLH+G+L+  +V+    R GH  + LIGG T ++GDPSGK   R  L  + +++N+  I      I   SN
Sbjct:    8 LDKRGFLKQCTNLEELSTLMDREKIV-FYVGVDATSASLHIGHLIPFMVMLHLQRQGHIPIILIGGGTTKIGDPSGKDSMRKILLKEDIDENVKTISSQLLKIIDLSN 114          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_BORDL (Tyrosyl-tRNA synthetase OS=Borrelia duttonii (strain Ly) GN=tyrS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  250 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFGSSN 573
            L++RG L+  T+    S     EK +  Y G D T+ SLH+G+L+  +V+    R GH  + LIGG T ++GDPSGK   R  L  + +++N+  I      I   SN
Sbjct:    8 LDKRGFLKQCTNLEELSTLMDREKIV-FYVGVDATSASLHIGHLIPFMVMLHLQRQGHIPIILIGGGTTKIGDPSGKDSMRKILLKEDIDENVKTISSQLLKIIDLSN 114          
BLAST of CX294898 vs. ExPASy Swiss-Prot
Match: SYY_ACHLI (Tyrosyl-tRNA synthetase OS=Acholeplasma laidlawii (strain PG-8A) GN=tyrS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 43/115 (37.39%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  250 LERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFG--SSNVVILN 588
            LE RG+++ + SD   +    NE+ +K Y G+DPT ESL +G+L+ I+ + +  + GH  V LIGG T  +GDP     E  E  + TLEK++   +K  + I G    NV  +N
Sbjct:    7 LEYRGMVKDV-SDLELAKQLLNEQKIKFYVGYDPTGESLTVGHLVQIVRMLYLQKHGHTPVVLIGGGTGLIGDPR----ETSERSLLTLEKSLENAQKIENQIKGLIKGNVEFVN 116          
The following BLAST results are available for this feature:
BLAST of CX294898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
SYY_MYCTU6.175e-1144.30Tyrosyl-tRNA synthetase OS=Mycobacterium tuberculo... [more]
SYY_MYCBO6.175e-1144.30Tyrosyl-tRNA synthetase OS=Mycobacterium bovis GN=... [more]
SYY_DESPS6.175e-1137.86Tyrosyl-tRNA synthetase OS=Desulfotalea psychrophi... [more]
SYY_BORBZ6.175e-1136.89Tyrosyl-tRNA synthetase OS=Borrelia burgdorferi (s... [more]
SYY_BORBU6.175e-1136.89Tyrosyl-tRNA synthetase OS=Borrelia burgdorferi GN... [more]
SYY_BORAP6.175e-1133.96Tyrosyl-tRNA synthetase OS=Borrelia afzelii (strai... [more]
SYY_STRTD8.065e-1133.88Tyrosyl-tRNA synthetase OS=Streptococcus thermophi... [more]
SYY_BORRA8.065e-1136.11Tyrosyl-tRNA synthetase OS=Borrelia recurrentis (s... [more]
SYY_BORDL8.065e-1136.11Tyrosyl-tRNA synthetase OS=Borrelia duttonii (stra... [more]
SYY_ACHLI8.065e-1137.39Tyrosyl-tRNA synthetase OS=Acholeplasma laidlawii ... [more]

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Properties
Property NameValue
Genbank descriptionC05057C04SK PhIFruit1 Citrus clementina cDNA clone C05057C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294898 ID=CX294898; Name=CX294898; organism=Citrus clementina; type=EST; length=596bp
AGCAAGTGCTGCTGACATCAAACGCAAATGGCAGCCGCAGCCGCTGCCGC
TGCGTCGAGAACTCTCCTCTGCTCCCACCAAAAACTCATAACCTCATCCA
TTTACAGCACCACCACCTCAAAAATCACCCACCCATTTCTTCACCGCATT
AAAAACTCTGCTTTCTTCTCTTCGATCAGCTGCGTTCAACAACTCCAATC
CGACCCACAGACACAAACCCACGGCCGTCACCCGAATGTCGTCGACACTC
TCGAGAGAAGAGGCTTGCTTGAATCTATCACCAGTGACAATCTCCGCTCA
CTCGCTTCATCCAATGAGAAAACCCTCAAAGTCTACTGCGGGTTTGACCC
AACTGCCGAGTCCTTACACTTGGGTAACCTCTTGGGTATCATTGTTCTGT
CTTGGTTCCTCCGTTGCGGCCACCAAGCTGTCGCCTTGATCGGTGGCGCC
ACCGCTCGTGTTGGTGACCCATCTGGGAAATCAATAGAAAGGCCTGAACT
CGACATTGATACGTTAGAAAAGAACATTCTTGGAATTCGTAAGACTTTTT
CAACCATTTTTGGTTCTAGTAATGTTGTTATTTTGAATATTATGAT
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