CX294904

Overview
NameCX294904
Unique NameCX294904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294904_ssr101 microsatellite CX294904_ssr101:101..112. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: Y2608_ARATH (B3 domain-containing protein At2g36080 OS=Arabidopsis thaliana GN=ARF31 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.491e-36
Identity = 72/94 (76.60%), Postives = 82/94 (87.23%), Query Frame = 1
Query:  295 EKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSN---EKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            EKE +F+K +TPSDVGKLNRLVIPKQHAE+YFPL +++    EKGLLL FED  GKPWRFRYSYWNSSQSYV+TKGWSR+VK+K LDAGDVV F
Sbjct:   33 EKEALFEKPLTPSDVGKLNRLVIPKQHAERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDAGDVVLF 126          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: RAV2_ARATH (AP2/ERF and B3 domain-containing transcription repressor RAV2 OS=Arabidopsis thaliana GN=RAV2 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.865e-36
Identity = 75/107 (70.09%), Postives = 87/107 (81.31%), Query Frame = 1
Query:  253 GEGEAEEDRVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNE--KGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            G    + D+VL +  +E +F+K VTPSDVGKLNRLVIPKQHAEK+FPL S S    KG+L+NFED NGK WRFRYSYWNSSQSYV+TKGWSRFVK+K L AGDVV+F
Sbjct:  171 GSSTTQNDKVLKT--REVLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLPSPSPAVTKGVLINFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVTF 275          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: Y3158_ARATH (B3 domain-containing protein At3g11580 OS=Arabidopsis thaliana GN=ARF32 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.706e-35
Identity = 70/102 (68.63%), Postives = 85/102 (83.33%), Query Frame = 1
Query:  295 EKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSN-----------EKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            ++E +F+K +TPSDVGKLNRLVIPKQHAEKYFPL++++N           EKG+LL+FED +GK W+FRYSYWNSSQSYV+TKGWSR+VKDK LDAGDVV F
Sbjct:   24 QRESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNNNNNNGGSGDDVATTEKGMLLSFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFF 125          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: RAV1_ARATH (AP2/ERF and B3 domain-containing transcription factor RAV1 OS=Arabidopsis thaliana GN=RAV1 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.706e-35
Identity = 72/90 (80.00%), Postives = 80/90 (88.89%), Query Frame = 1
Query:  301 EHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSS-NEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            E +F+K VTPSDVGKLNRLVIPK HAEK+FPL SS+ + KG+LLNFED NGK WRFRYSYWNSSQSYV+TKGWSRFVK+K L AGDVVSF
Sbjct:  185 EALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSF 274          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: Y1934_ORYSJ (AP2/ERF and B3 domain-containing protein Os01g0693400 OS=Oryza sativa subsp. japonica GN=Os01g0693400 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.229e-35
Identity = 71/93 (76.34%), Postives = 78/93 (83.87%), Query Frame = 1
Query:  298 KEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSS---NEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            ++H+FDK VTPSDVGKLNRLVIPKQHAEK+FPL   S     KG+LLNFED  GK WRFRYSYWNSSQSYV+TKGWSRFVK+K L AGDVV F
Sbjct:  212 RDHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPSAGGESKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGF 304          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: Y8577_ORYSJ (Putative B3 domain-containing protein Os08g0157700 OS=Oryza sativa subsp. japonica GN=Os08g0157700 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.203e-34
Identity = 68/96 (70.83%), Postives = 79/96 (82.29%), Query Frame = 1
Query:  280 VLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            V+++ E+EHMFDKVVTPSDVGKLNRLV+PKQHAE++FP  ++    G  L FEDR G PWRFRYSYW SSQSYVMTKGWSRFV+  +L AGD VSF
Sbjct:   61 VVVAAEREHMFDKVVTPSDVGKLNRLVVPKQHAERFFPAAAA----GTQLCFEDRAGTPWRFRYSYWGSSQSYVMTKGWSRFVRAARLSAGDTVSF 152          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: RAVL4_ARATH (AP2/ERF and B3 domain-containing transcription factor ARF14 OS=Arabidopsis thaliana GN=ARF14 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.223e-33
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = 1
Query:  301 EHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNE---KGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            E +F+K VTPSDVGKLNRLVIPK  AEK+FPL   +N    KG+LLNFED NGK WRFRYSYWNSSQSYV+TKGWSRFVK+K+L AGD++SF
Sbjct:  180 ELLFEKTVTPSDVGKLNRLVIPKHQAEKHFPLPLGNNNVSVKGMLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLISF 271          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: RAVL1_ARATH (AP2/ERF and B3 domain-containing transcription repressor TEM1 OS=Arabidopsis thaliana GN=TEM1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.724e-33
Identity = 69/98 (70.41%), Postives = 78/98 (79.59%), Query Frame = 1
Query:  298 KEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSS--------SNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            +E +F+K VTPSDVGKLNRLVIPKQHAEK+FPL +         S  KG+L+N EDR GK WRFRYSYWNSSQSYV+TKGWSRFVK+K L AGDVV F
Sbjct:  191 REVLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLPAMTTAMGMNPSPTKGVLINLEDRTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCF 288          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: Y5498_ORYSJ (AP2/ERF and B3 domain-containing protein Os05g0549800 OS=Oryza sativa subsp. japonica GN=Os05g0549800 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.069e-33
Identity = 70/111 (63.06%), Postives = 78/111 (70.27%), Query Frame = 1
Query:  289 SLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLD------------------SSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            S  +EH+FDK VTPSDVGKLNRLVIPKQHAEK+FPL                      + KG+LLNFED  GK W+FRYSYWNSSQSYV+TKGWSRFVK+K L AGD V F
Sbjct:  186 SAAREHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPPPTTTSSVAAAADAAAGGGDCKGVLLNFEDAAGKVWKFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGF 296          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: Y1410_ORYSJ (AP2/ERF and B3 domain-containing protein Os01g0141000 OS=Oryza sativa subsp. japonica GN=Os01g0141000 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.352e-32
Identity = 71/114 (62.28%), Postives = 83/114 (72.81%), Query Frame = 1
Query:  253 GEGEAEEDRVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPL------DSSS---NEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            G G     +   S  +E +F+K VTPSDVGKLNRLV+PKQHAEK+FPL      DS+S     KG+LLNFED  GK WRFRYSYWNSSQSYV+TKGWSRFV++K L AGD + F
Sbjct:  163 GRGMGARAQPTPSWAREPLFEKAVTPSDVGKLNRLVVPKQHAEKHFPLRRAASSDSASAAATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIVF 276          
The following BLAST results are available for this feature:
BLAST of CX294904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
Y2608_ARATH4.491e-3676.60B3 domain-containing protein At2g36080 OS=Arabidop... [more]
RAV2_ARATH5.865e-3670.09AP2/ERF and B3 domain-containing transcription rep... [more]
Y3158_ARATH1.706e-3568.63B3 domain-containing protein At3g11580 OS=Arabidop... [more]
RAV1_ARATH1.706e-3580.00AP2/ERF and B3 domain-containing transcription fac... [more]
Y1934_ORYSJ2.229e-3576.34AP2/ERF and B3 domain-containing protein Os01g0693... [more]
Y8577_ORYSJ4.203e-3470.83Putative B3 domain-containing protein Os08g0157700... [more]
RAVL4_ARATH1.223e-3373.91AP2/ERF and B3 domain-containing transcription fac... [more]
RAVL1_ARATH2.724e-3370.41AP2/ERF and B3 domain-containing transcription rep... [more]
Y5498_ORYSJ6.069e-3363.06AP2/ERF and B3 domain-containing protein Os05g0549... [more]
Y1410_ORYSJ1.352e-3262.28AP2/ERF and B3 domain-containing protein Os01g0141... [more]

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Properties
Property NameValue
Genbank descriptionC05057C10SK PhIFruit1 Citrus clementina cDNA clone C05057C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294904 ID=CX294904; Name=CX294904; organism=Citrus clementina; type=EST; length=609bp
GGGCCATTCCCTTCAAGTCCAGGGCTTAAGAGAGTTCACTGATGACTATC
TGGTGGTACACAGCTGCTTCCTCTTACCACTCATCATCAAAATTACAACA
AACAACAACAACCACAAATGGGTTCTTGGCTATTAGGCAAAACAACCACA
ACAACGACAGCCGCCGAATTAGAAGATGTCTCAAACGAAGAAGAAGCTGC
AGCACCAACAGAAGAGCAGGCCATCATCATGCAGGAGACGAAGGATATTA
TTGGAGAAGGAGAAGCAGAAGAAGATCGTGTTCTTATTAGCTTGGAGAAG
GAACACATGTTTGACAAAGTTGTAACACCAAGCGATGTGGGTAAGCTGAA
TCGTTTAGTCATTCCAAAGCAACACGCAGAAAAGTACTTCCCATTAGACT
CTTCCTCGAACGAGAAAGGCCTTCTCTTGAATTTCGAGGATCGAAATGGA
AAGCCATGGAGGTTCCGCTACTCTTACTGGAACAGCAGCCAAAGCTACGT
CATGACCAAAGGCTGGAGCCGCTTTGTCAAGGACAAGAAACTTGATGCCG
GTGACGTTGTTTCCTTTATAGGGGTGTTGGTGATTTGGCTAAAGGTCGTC
TTTTCATTG
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