CX294904

Overview
NameCX294904
Unique NameCX294904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: Y2641_ORYSJ (B3 domain-containing protein Os02g0764100 OS=Oryza sativa subsp. japonica GN=Os02g0764100 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.306e-32
Identity = 66/96 (68.75%), Postives = 79/96 (82.29%), Query Frame = 1
Query:  289 SLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLD-SSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFIG 573
            S  +E +F+K VTPSDVGKLNRL++PKQHAEK+FPL  +SS+  G+LLNFED  GK WRFRYS WNSSQSYV+TKGWSRFV++K L AGD + F G
Sbjct:   10 SWAREPLFEKAVTPSDVGKLNRLLVPKQHAEKHFPLRRTSSDASGVLLNFEDGEGKVWRFRYSCWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSG 105          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: Y1407_ORYSJ (Putative AP2/ERF and B3 domain-containing protein Os01g0140700 OS=Oryza sativa subsp. japonica GN=Os01g0140700 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.330e-31
Identity = 64/102 (62.75%), Postives = 77/102 (75.49%), Query Frame = 1
Query:  298 KEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPL-----DSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFIGVLVIW 588
            +E +F+K VTPSDVGKLNRLV+PKQ AE++FP       S +  KG+LLNFED +GK WRFRYSYWNSSQSYV+TKGWSRFV++K L  GD V+F      W
Sbjct:  174 REPLFEKAVTPSDVGKLNRLVVPKQQAERHFPFPLRRHSSDAAGKGVLLNFEDGDGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRPGDTVAFSRSAAAW 275          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: Y6078_ORYSJ (B3 domain-containing protein Os06g0107800 OS=Oryza sativa subsp. japonica GN=Os06g0107800 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 6.281e-30
Identity = 63/94 (67.02%), Postives = 76/94 (80.85%), Query Frame = 1
Query:  298 KEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEK--GLLLNFEDRNG--KPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            +E+MF+KVVTPSDVGKLNRLV+PK +AEKYFPL  ++     G +L FED  G    WRFRYSYW+SSQSYV+TKGWSR+V+DK+L AGD VSF
Sbjct:   33 REYMFEKVVTPSDVGKLNRLVVPKHYAEKYFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSRYVRDKRLAAGDTVSF 126          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: RAVL2_ARATH (AP2/ERF and B3 domain-containing transcription factor At1g50680 OS=Arabidopsis thaliana GN=At1g50680 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.832e-21
Identity = 55/120 (45.83%), Postives = 72/120 (60.00%), Query Frame = 1
Query:  241 KDIIGEGEAEEDRVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPL---DSSSNEKGLLLN--------FEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            K   GE   E D+     +   +F K +TPSDVGKLNRLVIPK++A KY P    D S  E+G ++         F DR  + W+FRY YW SSQS+V T+GW+ FVK+K L   DV++F
Sbjct:  137 KQARGEVNQESDKCFSCTQ---LFQKELTPSDVGKLNRLVIPKKYAVKYMPFISADQSEKEEGEIVGSVEDVEVVFYDRAMRQWKFRYCYWKSSQSFVFTRGWNSFVKEKNLKEKDVIAF 253          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: RAVL3_ARATH (AP2/ERF and B3 domain-containing transcription factor At1g51120 OS=Arabidopsis thaliana GN=At1g51120 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.551e-20
Identity = 52/119 (43.70%), Postives = 74/119 (62.18%), Query Frame = 1
Query:  238 TKDIIGEGEA-EEDRVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPL--------DSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            +K ++G GE  +E     S  +  +F K +TPSDVGKLNRLVIPK++A KY P         ++S   + + + F DR  + W+FRY YW SSQS+V T+GW+ FVK+K L   D++ F
Sbjct:  155 SKQVLGGGEGGQESNKCFSCTQ--LFQKELTPSDVGKLNRLVIPKKYAVKYMPFISDDQSEKETSEGVEDVEVVFYDRAMRQWKFRYCYWRSSQSFVFTRGWNGFVKEKNLKEKDIIVF 271          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: Y7633_ORYSJ (B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica GN=Os07g0563300 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.522e-12
Identity = 36/89 (40.45%), Postives = 60/89 (67.42%), Query Frame = 1
Query:  307 MFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYW--NSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            +F+K+++ SD G++ RLV+PK+ AE YFP  + S  +GL L  +D  GK W F++ +W  N+S+ YV+ +G +  ++  +L AGD V+F
Sbjct:  452 LFEKMLSASDAGRIGRLVLPKKCAEAYFP--AISQAEGLPLKVQDATGKEWVFQFRFWPNNNSRMYVL-EGVTPCIQSMQLQAGDTVTF 537          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: Y7797_ORYSJ (B3 domain-containing protein Os07g0679700 OS=Oryza sativa subsp. japonica GN=Os07g0679700 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.316e-11
Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 1
Query:  307 MFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYW--NSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            +F+KV++ SD G++ RLV+PK  AE YFP    S  +G  L  +D  GK W F++ +W  N+S+ YV+ +G +  ++  +L AGD V+F
Sbjct:  362 LFEKVLSASDAGRIGRLVLPKACAEAYFP--PISQPEGRPLTIQDAKGKEWHFQFRFWPNNNSRMYVL-EGVTPCIQSLQLQAGDTVTF 447          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: VAL2_ARATH (B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.718e-11
Identity = 37/89 (41.57%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  307 MFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYW--NSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            +F+KV++ SD G++ RLV+PK  AE YFP    S  +GL L  +D  GK W F++ +W  N+S+ YV+ +G +  ++  +L AGD V+F
Sbjct:  285 LFEKVLSASDAGRIGRLVLPKACAEAYFP--PISLPEGLPLKIQDIKGKEWVFQFRFWPNNNSRMYVL-EGVTPCIQSMQLQAGDTVTF 370          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: VAL1_ARATH (B3 domain-containing transcription repressor VAL1 OS=Arabidopsis thaliana GN=VAL1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.718e-11
Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 1
Query:  307 MFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYW--NSSQSYVMTKGWSRFVKDKKLDAGDVVSF 567
            +F+K ++ SD G++ RLV+PK  AE YFP  S S  +G+ L  +D  G+ W F++ YW  N+S+ YV+ +G +  ++   L AGD V+F
Sbjct:  294 LFEKTLSASDAGRIGRLVLPKACAEAYFPPISQS--EGIPLKIQDVRGREWTFQFRYWPNNNSRMYVL-EGVTPCIQSMMLQAGDTVTF 379          
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: ARFC_ARATH (Auxin response factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.718e-11
Identity = 40/106 (37.74%), Postives = 54/106 (50.94%), Query Frame = 1
Query:  256 EGEAEEDRVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFP-LDSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFI 570
            +G  E+  VL      HMF K +T SD        +P++ AE  FP LD S       L   D +G  WRFR+ Y    + +++T GWS FV  KKL +GD V F+
Sbjct:  141 DGGEEDYEVLKRSNTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL 246          
The following BLAST results are available for this feature:
BLAST of CX294904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
Y2641_ORYSJ2.306e-3268.75B3 domain-containing protein Os02g0764100 OS=Oryza... [more]
Y1407_ORYSJ3.330e-3162.75Putative AP2/ERF and B3 domain-containing protein ... [more]
Y6078_ORYSJ6.281e-3067.02B3 domain-containing protein Os06g0107800 OS=Oryza... [more]
RAVL2_ARATH1.832e-2145.83AP2/ERF and B3 domain-containing transcription fac... [more]
RAVL3_ARATH1.551e-2043.70AP2/ERF and B3 domain-containing transcription fac... [more]
Y7633_ORYSJ4.522e-1240.45B3 domain-containing protein Os07g0563300 OS=Oryza... [more]
Y7797_ORYSJ1.316e-1140.45B3 domain-containing protein Os07g0679700 OS=Oryza... [more]
VAL2_ARATH1.718e-1141.57B3 domain-containing transcription repressor VAL2 ... [more]
VAL1_ARATH1.718e-1140.45B3 domain-containing transcription repressor VAL1 ... [more]
ARFC_ARATH1.718e-1137.74Auxin response factor 3 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionC05057C10SK PhIFruit1 Citrus clementina cDNA clone C05057C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294904 ID=CX294904; Name=CX294904; organism=Citrus clementina; type=EST; length=609bp
GGGCCATTCCCTTCAAGTCCAGGGCTTAAGAGAGTTCACTGATGACTATC
TGGTGGTACACAGCTGCTTCCTCTTACCACTCATCATCAAAATTACAACA
AACAACAACAACCACAAATGGGTTCTTGGCTATTAGGCAAAACAACCACA
ACAACGACAGCCGCCGAATTAGAAGATGTCTCAAACGAAGAAGAAGCTGC
AGCACCAACAGAAGAGCAGGCCATCATCATGCAGGAGACGAAGGATATTA
TTGGAGAAGGAGAAGCAGAAGAAGATCGTGTTCTTATTAGCTTGGAGAAG
GAACACATGTTTGACAAAGTTGTAACACCAAGCGATGTGGGTAAGCTGAA
TCGTTTAGTCATTCCAAAGCAACACGCAGAAAAGTACTTCCCATTAGACT
CTTCCTCGAACGAGAAAGGCCTTCTCTTGAATTTCGAGGATCGAAATGGA
AAGCCATGGAGGTTCCGCTACTCTTACTGGAACAGCAGCCAAAGCTACGT
CATGACCAAAGGCTGGAGCCGCTTTGTCAAGGACAAGAAACTTGATGCCG
GTGACGTTGTTTCCTTTATAGGGGTGTTGGTGATTTGGCTAAAGGTCGTC
TTTTCATTG
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