CX294904

Overview
NameCX294904
Unique NameCX294904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: ARFO_ORYSJ (Auxin response factor 15 OS=Oryza sativa subsp. japonica GN=ARF15 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 39/107 (36.45%), Postives = 53/107 (49.53%), Query Frame = 1 
Query:  253 GEGEAEEDRVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFP-LDSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFI 570
            GEGE  +          HMF K +T SD        +P++ AE  FP LD S       L  +D +   WRFR+ Y    + +++T GWS FV  KKL +GD V F+
Sbjct:  123 GEGEDGDGMKQRFARMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHSTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL 229
[Close]
BLAST of CX294904 vs. ExPASy Swiss-Prot
Match: ARFB_ORYSJ (Auxin response factor 2 OS=Oryza sativa subsp. japonica GN=ARF2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.528e-11
Identity = 41/107 (38.32%), Postives = 55/107 (51.40%), Query Frame = 1 
Query:  253 GEGEAEEDRVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFP-LDSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFI 570
            GEGE   D V       HMF K +T SD        +P++ AE  FP LD S       L  +D +G  WRFR+ Y    + +++T GWS F+  KKL +GD V F+
Sbjct:  131 GEGE---DAVKRPARIPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSLQRPFQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSGFINKKKLVSGDAVLFL 234
The following BLAST results are available for this feature:
BLAST of CX294904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ARFO_ORYSJ6.530e-1136.45Auxin response factor 15 OS=Oryza sativa subsp. ja... [more]
ARFB_ORYSJ8.528e-1138.32Auxin response factor 2 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionC05057C10SK PhIFruit1 Citrus clementina cDNA clone C05057C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294904 ID=CX294904; Name=CX294904; organism=Citrus clementina; type=EST; length=609bp
GGGCCATTCCCTTCAAGTCCAGGGCTTAAGAGAGTTCACTGATGACTATC
TGGTGGTACACAGCTGCTTCCTCTTACCACTCATCATCAAAATTACAACA
AACAACAACAACCACAAATGGGTTCTTGGCTATTAGGCAAAACAACCACA
ACAACGACAGCCGCCGAATTAGAAGATGTCTCAAACGAAGAAGAAGCTGC
AGCACCAACAGAAGAGCAGGCCATCATCATGCAGGAGACGAAGGATATTA
TTGGAGAAGGAGAAGCAGAAGAAGATCGTGTTCTTATTAGCTTGGAGAAG
GAACACATGTTTGACAAAGTTGTAACACCAAGCGATGTGGGTAAGCTGAA
TCGTTTAGTCATTCCAAAGCAACACGCAGAAAAGTACTTCCCATTAGACT
CTTCCTCGAACGAGAAAGGCCTTCTCTTGAATTTCGAGGATCGAAATGGA
AAGCCATGGAGGTTCCGCTACTCTTACTGGAACAGCAGCCAAAGCTACGT
CATGACCAAAGGCTGGAGCCGCTTTGTCAAGGACAAGAAACTTGATGCCG
GTGACGTTGTTTCCTTTATAGGGGTGTTGGTGATTTGGCTAAAGGTCGTC
TTTTCATTG
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