CX294906

Overview
NameCX294906
Unique NameCX294906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX294906 vs. ExPASy Swiss-Prot
Match: HIBCH_YEAST (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Saccharomyces cerevisiae GN=EHD3 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.615e-12
Identity = 42/108 (38.89%), Postives = 55/108 (50.93%), Query Frame = 1 
Query:  283 IHAYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRL------PGHLGEFLALTGARLNGKELVAAGLATHFVPSEKLPELEKRL 588
            I  Y K  V    GITMGGG  L +   F + TE T ++ PE  IGF  D G +F   R+         +  +L LTG  + G +    GLA+H+V SE L  L+KRL
Sbjct:  131 IATYLKPIVTFMDGITMGGGVGLSIHTPFRIATENTKWAMPEMDIGFFPDVGSTFALPRIVTLANSNSQMALYLCLTGEVVTGADAYMLGLASHYVSSENLDALQKRL 238
The following BLAST results are available for this feature:
BLAST of CX294906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
HIBCH_YEAST1.615e-1238.893-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionC05057D01SK PhIFruit1 Citrus clementina cDNA clone C05057D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294906 ID=CX294906; Name=CX294906; organism=Citrus clementina; type=EST; length=626bp
TATATTAGGATCAGACAGAGAAAGGATGTGCATTCATTGATAGAAGCTAG
TTTAGAAATACATTCTTCAACATATTTATCAGGTTACATTACCGTCAACA
TCTTCCATTCACTGTGTGAGACAGTCACAACAATCAACATGCCTCATATA
GCGAAGCACACCACTTCCACTCTTGTACTCTTCAGAATAAAGAATGAGAT
ATGGCGAATCTGTTGGACCCTTTGCCTGCAATATGTGCCAGCCTCGTGCC
GAATTCGGCACGAGGATTGGCTTTGCCATCACATTCATGCCTATAAGAAA
ACCCAGGTAGCTCTTGCTCATGGAATTACAATGGGAGGAGGCGCGTCTTT
GATGGTTCCTCTGAAATTCTCAGTTGTCACGGAAAAAACTGTTTTTTCCA
CTCCAGAAGCAAGTATTGGATTTCATACTGATTGCGGTTTCTCATTCATC
CATTCTCGTCTCCCTGGACATTTAGGGGAATTCCTGGCCTTAACTGGGGC
AAGGCTAAATGGCAAGGAACTGGTTGCAGCTGGGCTAGCTACCCATTTTG
TCCCTTCTGAGAAATTGCCCGAGCTAGAAAAGCGTCTGATAGGCTTAAAC
ACTGGTGATGAAATTGCAGTCAAATC
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