CX294907

Overview
NameCX294907
Unique NameCX294907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294907 vs. ExPASy Swiss-Prot
Match: EF2_METM6 (Elongation factor 2 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=fusA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 68/186 (36.56%), Postives = 111/186 (59.68%), Query Frame = 2
Query:   20 EDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPK---ARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEE 565
            +DLPKL+E L+++A+ D  V   I EE+GEH+++G GELH+E+ + + +    GG E+   +P+V +RET+   S   +  KSPNKHN+LYM A P++E +  A  +G+I   D  K   A  +    E G +K+ AK++          NM+V+M +G+  L+E ++ ++ GF+   + G LA E
Sbjct:  404 KDLPKLIEILRQIAREDNTVRVEINEETGEHLISGMGELHIEV-ITNTKIGRDGGIEVDVGEPIVVYRETITGTSPE-IEGKSPNKHNKLYMIAEPMDESVYAAYVEGKIHDEDYKKKTTADGEARLVEAGLEKEQAKRVM----SIYNGNMIVNMTRGIVQLDEARELIIEGFKEGVRNGPLAAE 583          
BLAST of CX294907 vs. ExPASy Swiss-Prot
Match: EF2_HALSA (Elongation factor 2 OS=Halobacterium salinarium GN=fusA PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 7.567e-23
Identity = 62/183 (33.88%), Postives = 106/183 (57.92%), Query Frame = 2
Query:   20 EDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEE 565
            +DLPKL+E L++++K DP +   I E++GEH+++G GELHLE+  + ++ +   G  +   +P+V +RET    S + V   SPN+HN+ Y+    L + + E I  G +   D P+   + + +E G DK+ ++ +        G N+ +D  KG+Q+LNE  + VV G   + ++G LA E
Sbjct:  402 DDLPKLIETLRQVSKEDPTISIEINEDTGEHLISGQGELHLEVQTQRIERN--QGIPVTTGEPIVVYRETPTSDS-QEVEGVSPNRHNKFYITVEQLSDDVLEEIRLGEVS-MDMPEQERREVLQEAGMDKETSQDV----ENIIGRNIFIDDTKGIQHLNETMELVVDGLTDSLEDGPLAAE 576          
BLAST of CX294907 vs. ExPASy Swiss-Prot
Match: EF2_HALS3 (Elongation factor 2 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=fusA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.567e-23
Identity = 62/183 (33.88%), Postives = 106/183 (57.92%), Query Frame = 2
Query:   20 EDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEE 565
            +DLPKL+E L++++K DP +   I E++GEH+++G GELHLE+  + ++ +   G  +   +P+V +RET    S + V   SPN+HN+ Y+    L + + E I  G +   D P+   + + +E G DK+ ++ +        G N+ +D  KG+Q+LNE  + VV G   + ++G LA E
Sbjct:  402 DDLPKLIETLRQVSKEDPTISIEINEDTGEHLISGQGELHLEVQTQRIERN--QGIPVTTGEPIVVYRETPTSDS-QEVEGVSPNRHNKFYITVEQLSDDVLEEIRLGEVS-MDMPEQERREVLQEAGMDKETSQDV----ENIIGRNIFIDDTKGIQHLNETMELVVDGLTDSLEDGPLAAE 576          
BLAST of CX294907 vs. ExPASy Swiss-Prot
Match: EF2_META3 (Elongation factor 2 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=fusA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.291e-22
Identity = 68/186 (36.56%), Postives = 108/186 (58.06%), Query Frame = 2
Query:   20 EDLPKLVEGLKRLAKSDPMVVCTI-EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSE---EFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEE 565
            +DLPKL++ L+++AK D  V   I EE+GEH+++G GELH+E+ + + +     G E+   +P+V +RE V   S   V  KSPNKHNRLY  A PL+E +  A  +G I   D  K   K +     E G +++ AK++          N++++M +G+  L+E ++ ++ GF+ A K G LA E
Sbjct:  404 KDLPKLIDVLRQIAKEDNTVRVEINEETGEHLISGMGELHIEV-ITNTKIGRDAGVEVDVGEPIVVYREAVNGVSPE-VEGKSPNKHNRLYFVAEPLDECVYNAHVEGLIKDEDFKKKTPKEVETKLVEIGMNREEAKRVMTI----YEGNVLLNMTRGIVQLDEARELIIEGFKEAVKNGPLAAE 583          
BLAST of CX294907 vs. ExPASy Swiss-Prot
Match: SN114_YEAST (114 kDa U5 small nuclear ribonucleoprotein component OS=Saccharomyces cerevisiae GN=SNU114 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.995e-20
Identity = 60/199 (30.15%), Postives = 104/199 (52.26%), Query Frame = 2
Query:   23 DLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTV-MSKSPNKHNR-------LYMEARPLEEGLAEAIDDGRIGP----------RDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEE 565
            +LPKL++ L +++K  P V+  +EESGEH++ G GEL+++  L DL+  +    EI  SDP+  F E+   +S  ++ +S S ++          + + A P++  + + +    +G            D+P+  SKIL  E+GWD   ++ +W F       N  +      + L++ K+ ++ GF WA KEG LAEE
Sbjct:  614 ELPKLLDALNKISKYYPGVIIKVEESGEHVILGNGELYMDCLLYDLRASY-AKIEIKISDPLTVFSESCSNESFASIPVSNSISRLGEENLPGLSISVAAEPMDSKMIQDLSRNTLGKGQNCLDIDGIMDNPRKLSKILRTEYGWDSLASRNVWSFYNGNVLINDTLPDEISPELLSKYKEQIIQGFYWAVKEGPLAEE 811          
BLAST of CX294907 vs. ExPASy Swiss-Prot
Match: EF2_NANEQ (Elongation factor 2 OS=Nanoarchaeum equitans GN=fusA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.860e-16
Identity = 59/189 (31.22%), Postives = 103/189 (54.50%), Query Frame = 2
Query:   23 DLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEE-------FGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEE 565
            DLPKL+E LK + K DP +   I+ ESG+ +++G G+LHLEI    +++DF    +II S+P+V +RE+V +     V  KSPNK N+ Y+    + + L   + + ++   + P+ + K ++E+        G+ ++ A++      E    NM  DM +G+ ++ E+ D V+  F      G +A E
Sbjct:  415 DLPKLIEVLKLIQKEDPTLKVEIDQESGQILISGLGDLHLEIVEYRIKNDFK--VDIITSNPIVVYRESV-KGQAGPVEGKSPNKLNKFYITVEKMPDELYWKLRE-KLLKGELPEGKIKKMNEDIIKHLMSLGFTREEAQRCKVIYRE----NMFFDMTRGIIHIGEVIDMVMDAFMQVMDHGPIAWE 595          
BLAST of CX294907 vs. ExPASy Swiss-Prot
Match: ETUD1_HUMAN (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Homo sapiens GN=EFTUD1 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15
Identity = 63/258 (24.42%), Postives = 111/258 (43.02%), Query Frame = 2
Query:   23 DLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLE------------------------------------KSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKI-----------LSEEFGWD--------------KDLAKKIWCFGPETTGPNMVVDMCKGVQ----------------YLNEIKDSVVAGFQWASKEGALAEE 565
            ++P+LV+G+K L ++DP V   I+E+GEH++  AGE+HL+ CL DL++ F     I  S+P++ FRET+ +                                     S   +   +PNK   L + A PL E + + +++     R   +  S +            ++E  W+              +++  +IW FGP   GPN++V+  +  Q                   ++ +S+V+GFQ A+  G + EE
Sbjct:  629 EMPQLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERF-AKIHISVSEPIIPFRETITKPPKVDMVNEEIGKQQKVAVIHQMKEDQSKIPEGIQVDSDGLITITTPNKLATLSVRAMPLPEEVTQILEENSDLIRSMEQLTSSLNEGENTHMIHQKTQEKIWEFKGKLEQHLTGRRWRNIVDQIWSFGPRKCGPNILVNKSEDFQNSVWTGPADKASKEASRYRDLGNSIVSGFQLATLSGPMCEE 885          
BLAST of CX294907 vs. ExPASy Swiss-Prot
Match: ETUD1_MOUSE (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Mus musculus GN=Eftud1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.905e-15
Identity = 67/258 (25.97%), Postives = 107/258 (41.47%), Query Frame = 2
Query:   23 DLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLE------------------------------------KSCRTVMSKSPNKHNRLYMEARPLEEG-----------------LAEAIDDGRIGPRDDPKARSKILSEEFGWDKDL--------AKKIWCFGPETTGPNMVVDMCKGVQ----------------YLNEIKDSVVAGFQWASKEGALAEE 565
            ++P+LV+G+K L ++DP V   I+E+GEH++  AGE+HL+ CL DL++ F     I  S+P++ FRET+ +                                     S   +   +PNK   L + A PL E                  L  ++++GR       K + KI   +   +K L          +IW FGP   GPN++V   +  Q                   +  +S+V+GFQ A+  G + EE
Sbjct:  629 EMPQLVKGMKLLNQADPCVQVLIQETGEHVLVTAGEVHLQRCLDDLRERF-AKIHISVSEPIIPFRETITKPPKVDMVNEEIGRQQKVAVIHQTKEEQSKIPEGIHVDSDGLITIPTPNKLATLSVRAIPLPEEVTRILEENSDLIRSMELLTSSLNEGRNTQAIHQKTQEKIWEFKGKLEKHLTGRKWRNTVDQIWSFGPRKCGPNILVSRSEDFQNSVWSGPAGRESKEASRFRDFGNSIVSGFQLATLSGPMCEE 885          
BLAST of CX294907 vs. ExPASy Swiss-Prot
Match: RIA1_SCHPO (Ribosome assembly protein 1 OS=Schizosaccharomyces pombe GN=ria1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.207e-14
Identity = 69/244 (28.28%), Postives = 105/244 (43.03%), Query Frame = 2
Query:   11 IRHEDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETV-------------------------------------------LEKSCRTVMSKSPN--KHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEE---FGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYL-----------NEIKDSVVAGFQWASKEGALAEE 565
            +R  ++ KLV GL  L ++DP V   +EE+GEH++  AGE+HLE CLKDL++ F    EI  S P+V +RET                                            L K  +T+ + S N  K NR  + +  L + + E +      P    +  SK+L EE    G  K+    I  FGP+  GPN++ D  K ++             +++ + VV  FQ  + +G L  E
Sbjct:  571 VRPFEMNKLVTGLDMLNQADPCVQIAVEENGEHVIMCAGEIHLERCLKDLRERF-AKIEIQASQPLVPYRETTIATPDLLAKNKELSIGFVTATLPVGGVTIGITVTPLSGSVVDFLLKHSKTIENVSSNFSKKNRNVVVSESLTKSMEEVLT-----PEKFYERLSKLLEEENSDLGELKNHLDSIIAFGPKRVGPNILFDKTKKMRDFRRQSDETKLIPSDLSEYVVTAFQLITHQGPLCAE 808          
BLAST of CX294907 vs. ExPASy Swiss-Prot
Match: RIA1_YEAST (Ribosome assembly protein 1 OS=Saccharomyces cerevisiae GN=RIA1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.186e-13
Identity = 63/225 (28.00%), Postives = 97/225 (43.11%), Query Frame = 2
Query:   23 DLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKS----------------------------------CRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLA---KKIWCFGPETTGPNMVV-------DMCKGVQYLNEIKDSVVAGFQWASKEGALAEE 565
            ++ KLV GLK L ++DP V   +E +GEHI+  AGELHLE CLKDL + F  G EI  S+P + +RET L  S                                      +S+  N    +   +    + + E+     +  +    A  +++++E    + L+    K+  FGP   G N+++        + +G     E  DS+  GFQ A  EG LA E
Sbjct:  690 EMSKLVRGLKLLDQADPCVHTYVENTGEHILCTAGELHLERCLKDLTERF-AGIEITHSEPAIPYRETFLSASDMNPPQNSQLGRGVHELLLSQYKITFRTFPLSGKVTDFLSQHQNSIKNILKTSTSSMDPVIESTGSSFLDKKSLLVAFEEVINQEEKSRELLSGFKVKLAGFGPSRVGCNILLSQDNLLGSLFEGTPAAFEYSDSIKNGFQLAVSEGPLANE 913          
The following BLAST results are available for this feature:
BLAST of CX294907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
EF2_METM66.190e-2536.56Elongation factor 2 OS=Methanococcus maripaludis (... [more]
EF2_HALSA7.567e-2333.88Elongation factor 2 OS=Halobacterium salinarium GN... [more]
EF2_HALS37.567e-2333.88Elongation factor 2 OS=Halobacterium salinarum (st... [more]
EF2_META31.291e-2236.56Elongation factor 2 OS=Methanococcus aeolicus (str... [more]
SN114_YEAST5.995e-2030.15114 kDa U5 small nuclear ribonucleoprotein compone... [more]
EF2_NANEQ6.860e-1631.22Elongation factor 2 OS=Nanoarchaeum equitans GN=fu... [more]
ETUD1_HUMAN7.584e-1524.42Elongation factor Tu GTP-binding domain-containing... [more]
ETUD1_MOUSE9.905e-1525.97Elongation factor Tu GTP-binding domain-containing... [more]
RIA1_SCHPO2.207e-1428.28Ribosome assembly protein 1 OS=Schizosaccharomyces... [more]
RIA1_YEAST3.186e-1328.00Ribosome assembly protein 1 OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionC05057D02SK PhIFruit1 Citrus clementina cDNA clone C05057D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294907 ID=CX294907; Name=CX294907; organism=Citrus clementina; type=EST; length=621bp
CTCGTGCCGAATTCGGCACGAGGATCTCCCTAAGCTTGTTGAAGGTCTTA
AGCGTTTGGCCAAGTCAGATCCTATGGTTGTCTGTACAATTGAGGAGTCT
GGCGAGCACATTGTTGCTGGTGCGGGAGAACTTCACCTTGAGATCTGTTT
GAAGGATCTGCAGGACGATTTCATGGGAGGTGCTGAAATTATTAAATCTG
ATCCTGTTGTGTCCTTCCGTGAAACTGTCCTTGAGAAGTCTTGCCGCACT
GTGATGAGTAAGTCTCCCAACAAGCATAATCGTCTCTACATGGAAGCCCG
ACCTCTGGAAGAAGGTCTTGCTGAGGCCATAGATGATGGCCGCATTGGTC
CAAGGGATGATCCCAAGGCTCGATCTAAGATCTTGTCTGAGGAGTTCGGC
TGGGACAAGGATCTTGCGAAGAAGATTTGGTGTTTTGGTCCTGAGACCAC
TGGCCCTAACATGGTCGTTGATATGTGTAAGGGAGTTCAATACTTGAATG
AAATTAAGGATTCTGTTGTTGCTGGTTTCCAGTGGGCATCGAAAGAAGGT
GCGCTGGCTGAAGAGACATGAGAGGTATCTGCTTTGAGTATGTGATGTTG
TTCTTACGCTGATGCCATTCA
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