CX294908

Overview
NameCX294908
Unique NameCX294908
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9909 contig Ccv1_Contig9909:4..592. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294908 vs. ExPASy Swiss-Prot
Match: METK_STRGG (S-adenosylmethionine synthetase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=metK PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.167e-38
Identity = 90/167 (53.89%), Postives = 105/167 (62.87%), Query Frame = 1
Query:  100 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPE-------DIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKDST 579
            M   LFTSESV EGHPDK+ DQISD +LDA L +DP S+VA ET   T +V V GE+TTKA  D   +VR+    IG+ S   G D   C V V+I  QSPDIAQGV   + KR E         GAGDQG MFGYA DET E MPL   +A +L  RL+EVRK+ T
Sbjct:    1 MSRRLFTSESVTEGHPDKIADQISDTILDALLREDPTSRVAVETLITTGLVHVAGEVTTKAYADIPNLVRNKVLEIGYDSSKKGFDGASCGVSVSIGAQSPDIAQGVDTAYEKRVEGDEDELDKQGAGDQGLMFGYACDETPELMPLPIHVAHRLSRRLSEVRKNGT 167          
BLAST of CX294908 vs. ExPASy Swiss-Prot
Match: METK_RHOFD (S-adenosylmethionine synthetase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=metK PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.167e-38
Identity = 84/155 (54.19%), Postives = 108/155 (69.68%), Query Frame = 1
Query:  109 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKD 573
            FLFTSESV+EGHPDK+ DQISDA+LDA  +QDP+S+VA ET   T +V++ GEITT A VDY ++ RDT + IG+ + + G+D   C VLV  ++QS DIAQGV  H +    + GAGDQG MFGYA +ET E MP     A +L  R  ++RKD
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAIFKQDPKSRVAAETLCNTGLVVLAGEITTNAHVDYIQVARDTLKRIGYDNTEYGIDYKGCAVLVAYDKQSNDIAQGV-DHASDDHLNTGAGDQGLMFGYACNETPELMPAPIYYAHRLVERQAQLRKD 158          
BLAST of CX294908 vs. ExPASy Swiss-Prot
Match: METK_MOOTA (S-adenosylmethionine synthetase OS=Moorella thermoacetica (strain ATCC 39073) GN=metK PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.167e-38
Identity = 81/161 (50.31%), Postives = 106/161 (65.84%), Query Frame = 1
Query:  112 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP-------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKD 573
            LFTSESV EGHPDK+ D+I+DAVLDA   +D +++VACE    T +++V G+ITT   VD  ++ R+T R IG+     G D D C V+ +I++QSPDIA GV+  + K+        E +GAGDQG MFGYAT ET EFMP+   LA  L  RL  VRK+
Sbjct:    5 LFTSESVTEGHPDKIADRIADAVLDAIYAKDNQARVACECLVSTGLILVAGQITTDCYVDIPRVARETVREIGYTRAKFGFDCDTCAVITSIDEQSPDIAMGVNEAWEKKQGEARDEVETLGAGDQGMMFGYATSETPEFMPMPIALAHALTRRLAAVRKE 165          
BLAST of CX294908 vs. ExPASy Swiss-Prot
Match: METK_METPP (S-adenosylmethionine synthetase OS=Methylibium petroleiphilum (strain PM1) GN=metK PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.167e-38
Identity = 85/155 (54.84%), Postives = 106/155 (68.39%), Query Frame = 1
Query:  109 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKD 573
            FLFTSESV+EGHPDK+ DQISDA+LDA   QDP S+VA ET T T +V++ GEITT A VDY ++ RDT + IG+ + + G+D   C VLV  ++QS DIAQGV    +    + GAGDQG MFGYA DET E MP     A +L  R  ++RKD
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAIFAQDPRSRVAAETLTNTGLVVLAGEITTNAHVDYIQVARDTIKRIGYDNTEYGIDYKGCAVLVAYDKQSNDIAQGV-DQASDDHLNTGAGDQGLMFGYACDETPELMPAPIYYAHRLVERQAQLRKD 158          
BLAST of CX294908 vs. ExPASy Swiss-Prot
Match: METK_AMOPS (S-adenosylmethionine synthetase OS=Amoeba proteus symbiotic bacterium GN=metK PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.167e-38
Identity = 87/159 (54.72%), Postives = 107/159 (67.30%), Query Frame = 1
Query:  112 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKDSTCSW 588
            +FTSESV+EGHPDK+ DQISDA+LDA L +DP ++VACET  KT MV+V GEITT A VD E I R+  + IG+ S D+G D   C VL  I +QS DIAQGV    TK    +GAGDQG MFGYA+ ET   MP     + +L AR  E+RK++   W
Sbjct:    5 VFTSESVSEGHPDKIADQISDAILDAILAKDPLARVACETFVKTGMVLVGGEITTSAWVDVETITREVIKDIGYNSSDMGFDWASCSVLSAIGKQSLDIAQGVDNRETK---ILGAGDQGLMFGYASRETDVCMPAPIAYSHRLMARQAELRKNNKLPW 160          
BLAST of CX294908 vs. ExPASy Swiss-Prot
Match: METK_STRPM (S-adenosylmethionine synthetase OS=Streptococcus pyogenes serotype M28 GN=metK PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.524e-38
Identity = 87/168 (51.79%), Postives = 109/168 (64.88%), Query Frame = 1
Query:  103 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPED------IGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKDSTCSW 588
            E  LFTSESV+EGHPDK+ DQISDA+LDA L +DPE+ VA ETC  T  V VFGEI+TKA +D  ++VRDT   IG+   + G  A+   V  ++ +QS DIAQGV+     R  D      IGAGDQG MFG+A +ET E MPL   L+ +L  RL E+RK    S+
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAEDPEAHVAAETCVYTGSVHVFGEISTKAYIDINRVVRDTIAEIGYTEAEYGFSAESVGVHPSLVEQSGDIAQGVNEALESREGDTDDLSHIGAGDQGLMFGFAINETPELMPLPISLSHQLVRRLAELRKSGEISY 170          
BLAST of CX294908 vs. ExPASy Swiss-Prot
Match: METK_STRP1 (S-adenosylmethionine synthetase OS=Streptococcus pyogenes serotype M1 GN=metK PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.524e-38
Identity = 87/168 (51.79%), Postives = 109/168 (64.88%), Query Frame = 1
Query:  103 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPED------IGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKDSTCSW 588
            E  LFTSESV+EGHPDK+ DQISDA+LDA L +DPE+ VA ETC  T  V VFGEI+T A +D  ++VRDT   IG+   + G  A+   V  ++ +QS DIAQGV+  F  R  D      IGAGDQG MFG+A +ET E MPL   L+ +L  RL E+RK    S+
Sbjct:    3 ERKLFTSESVSEGHPDKIADQISDAILDAILAEDPEAHVAAETCVYTGSVHVFGEISTTAYIDINRVVRDTIAEIGYTEAEYGFSAESVGVHPSLVEQSGDIAQGVNEAFESREGDTDDLSHIGAGDQGLMFGFAINETPELMPLPISLSHQLVRRLAELRKSGEISY 170          
BLAST of CX294908 vs. ExPASy Swiss-Prot
Match: METK_STAS1 (S-adenosylmethionine synthetase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=metK PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.524e-38
Identity = 83/161 (51.55%), Postives = 105/161 (65.22%), Query Frame = 1
Query:  112 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP-------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKD 573
            LFTSESV EGHPDK+ DQ+SDA+LD  L+ DP ++VACET   T M ++ GEI+T   VD  K+VR+T + IG+     G D+    VL  I++QSPDIAQGV      R        E  GAGDQG MFGYAT+ET  +MPL   L+ +L  RL++VRKD
Sbjct:    7 LFTSESVTEGHPDKIADQVSDAILDEILKDDPNARVACETTVTTGMALISGEISTTTYVDIPKVVRETIKEIGYTRAKFGYDSQTMAVLTAIDEQSPDIAQGVDTALEYRDEASEAEIEATGAGDQGLMFGYATNETDTYMPLPIFLSHQLAKRLSDVRKD 167          
BLAST of CX294908 vs. ExPASy Swiss-Prot
Match: METK_RALSO (S-adenosylmethionine synthetase OS=Ralstonia solanacearum GN=metK PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.524e-38
Identity = 85/163 (52.15%), Postives = 108/163 (66.26%), Query Frame = 1
Query:  109 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI---GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKDSTCSW 588
            FLFTSESV+EGHPDK+ DQISDA+LDA L QD  ++VA ET   T +V++ GEITT A VDY  + R+T + IG+ + D G+D   C VLV  ++QSPDIAQGV     +  +D    GAGDQG MFGYA DET E MP     A +L  R +++R+D    W
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAILAQDKYARVAAETLCNTGLVVLAGEITTSANVDYIHVARETIKRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGV----DRASDDYLNQGAGDQGLMFGYACDETPELMPFPIYYAHRLVERQSQLRRDGRLPW 163          
BLAST of CX294908 vs. ExPASy Swiss-Prot
Match: METK_METCA (S-adenosylmethionine synthetase OS=Methylococcus capsulatus GN=metK PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.524e-38
Identity = 85/161 (52.80%), Postives = 106/161 (65.84%), Query Frame = 1
Query:  106 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKDSTCSW 588
            +F+FTSESV+EGHPDK+ DQ+SDAVLDA L QDP+++VA ET  KT MV++ GE+TT A VD E++VR     IG+ + ++G D   C VL  I +QSPDIA GV   F    +  GAGDQG MFGYAT+ET   MP     A +L  R  EVRK     W
Sbjct:    4 SFIFTSESVSEGHPDKIADQVSDAVLDAILAQDPKARVAVETLVKTGMVVLAGEVTTSAWVDTEELVRKVVHEIGYDNPEIGFDWQSCAVLTAIGKQSPDIAMGV-DEFDDHEQ--GAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKHKVLPW 161          
The following BLAST results are available for this feature:
BLAST of CX294908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_STRGG1.167e-3853.89S-adenosylmethionine synthetase OS=Streptomyces gr... [more]
METK_RHOFD1.167e-3854.19S-adenosylmethionine synthetase OS=Rhodoferax ferr... [more]
METK_MOOTA1.167e-3850.31S-adenosylmethionine synthetase OS=Moorella thermo... [more]
METK_METPP1.167e-3854.84S-adenosylmethionine synthetase OS=Methylibium pet... [more]
METK_AMOPS1.167e-3854.72S-adenosylmethionine synthetase OS=Amoeba proteus ... [more]
METK_STRPM1.524e-3851.79S-adenosylmethionine synthetase OS=Streptococcus p... [more]
METK_STRP11.524e-3851.79S-adenosylmethionine synthetase OS=Streptococcus p... [more]
METK_STAS11.524e-3851.55S-adenosylmethionine synthetase OS=Staphylococcus ... [more]
METK_RALSO1.524e-3852.15S-adenosylmethionine synthetase OS=Ralstonia solan... [more]
METK_METCA1.524e-3852.80S-adenosylmethionine synthetase OS=Methylococcus c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05057D04SK PhIFruit1 Citrus clementina cDNA clone C05057D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294908 ID=CX294908; Name=CX294908; organism=Citrus clementina; type=EST; length=589bp
CTCGTGCCGAATTCGGCACGAGGCTTTGCTATTGAGGTCTGGTCTTAAGT
CTGAATCTTAGATCTGCGCCGAAACACTTGCCAGCCACAGCTTGATAAGA
TGGAGACCTTTCTATTCACCTCTGAATCTGTGAACGAGGGTCACCCCGAC
AAGTTGTGCGACCAGATCTCTGATGCGGTGCTTGACGCCTGCCTTGAGCA
GGATCCTGAGAGCAAGGTTGCCTGTGAGACATGCACCAAGACCAACATGG
TCATGGTCTTTGGAGAGATTACCACCAAGGCCAAGGTAGACTATGAGAAG
ATTGTTCGCGACACTTGCCGTTCCATTGGATTTGTTTCTGATGATGTGGG
TCTTGACGCCGATCACTGCAAAGTCCTGGTCAATATTGAGCAACAAAGCC
CGGATATTGCCCAGGGTGTTCATGGCCACTTTACAAAGCGCCCTGAGGAC
ATTGGTGCTGGTGACCAGGGCCATATGTTTGGTTATGCTACTGATGAGAC
CTCTGAATTTATGCCTTTGAGCCATGTCCTTGCCACCAAACTTGGTGCTC
GTCTCACGGAGGTTAGGAAAGATAGTACCTGCTCTTGGC
back to top